HEADER MEMBRANE PROTEIN 19-SEP-23 8QLF TITLE CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP ERNAR IN THE TITLE 2 MONOMERIC FORM AT PH 8.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERYTHROBACTER; SOURCE 3 ORGANISM_TAXID: 1041; SOURCE 4 GENE: SAMN04515621_2824; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RETINAL, ION TRANSPORT, RHODOPSIN, PHOTOCYCLE, SODIUM TRANSPORT, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,E.PODOLIAK,G.H.U.LAMM,R.ASTASHKIN,G.BOURENKOV REVDAT 1 24-APR-24 8QLF 0 JRNL AUTH E.PODOLIAK,G.H.U.LAMM,E.MARIN,A.V.SCHELLBACH,D.A.FEDOTOV, JRNL AUTH 2 A.STETSENKO,M.ASIDO,N.MALIAR,G.BOURENKOV,T.BALANDIN, JRNL AUTH 3 C.BAEKEN,R.ASTASHKIN,T.R.SCHNEIDER,A.BATEMAN,J.WACHTVEITL, JRNL AUTH 4 I.SCHAPIRO,V.BUSSKAMP,A.GUSKOV,V.GORDELIY,A.ALEKSEEV, JRNL AUTH 5 K.KOVALEV JRNL TITL A SUBGROUP OF LIGHT-DRIVEN SODIUM PUMPS WITH AN ADDITIONAL JRNL TITL 2 SCHIFF BASE COUNTERION. JRNL REF NAT COMMUN V. 15 3119 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38600129 JRNL DOI 10.1038/S41467-024-47469-0 REMARK 2 REMARK 2 RESOLUTION. 1.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 75.5 REMARK 3 NUMBER OF REFLECTIONS : 25066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1304 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3840 REMARK 3 BIN FREE R VALUE SET COUNT : 4 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2168 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 214 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.144 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.793 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2473 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2542 ; 0.000 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3301 ; 1.046 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5823 ; 1.113 ; 1.549 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;30.680 ;20.420 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;13.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.013 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2643 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1107 ; 2.828 ; 2.716 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1106 ; 2.812 ; 2.712 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1389 ; 3.804 ; 4.061 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1390 ; 3.808 ; 4.066 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1366 ; 3.676 ; 3.395 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1367 ; 3.681 ; 3.396 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1913 ; 5.449 ; 4.805 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2828 ; 6.722 ;33.181 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2829 ; 6.728 ;33.192 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QLF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26414 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.707 REMARK 200 RESOLUTION RANGE LOW (A) : 46.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 37.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7690 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 10% PEG550MME, REMARK 280 SOAKED IN 0.1M TRIS-HCL PH 8.8, 10% PEG550MME PRIOR TO CRYSTAL REMARK 280 HARVESTING., LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.61400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 243.22800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 182.42100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 304.03500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.80700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.61400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 243.22800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 304.03500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 182.42100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.80700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C6 LFA A 414 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 273 REMARK 465 GLY A 274 REMARK 465 GLU A 275 REMARK 465 PHE A 276 REMARK 465 ASP A 277 REMARK 465 GLU A 278 REMARK 465 ARG A 279 REMARK 465 ALA A 280 REMARK 465 PRO A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CE NZ REMARK 470 ARG A 259 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 590 2.15 REMARK 500 ND2 ASN A 6 O PHE A 93 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LFA A 401 REMARK 610 OLA A 402 REMARK 610 LFA A 403 REMARK 610 LFA A 404 REMARK 610 LFA A 405 REMARK 610 LFA A 407 REMARK 610 LFA A 408 REMARK 610 OLA A 409 REMARK 610 LFA A 411 REMARK 610 LFA A 412 REMARK 610 LFA A 413 REMARK 610 LFA A 414 REMARK 610 LFA A 415 REMARK 610 LFA A 416 REMARK 610 LFA A 417 REMARK 610 LFA A 418 DBREF1 8QLF A 1 283 UNP A0A1H1XA63_9SPHN DBREF2 8QLF A A0A1H1XA63 1 283 SEQRES 1 A 283 MET PRO SER ILE GLU ASN PHE LEU ALA TYR ASP PHE TRP SEQRES 2 A 283 GLN TYR ASP VAL ILE ARG HIS LEU PHE ALA PHE SER THR SEQRES 3 A 283 ALA VAL PHE LEU ALA GLY LEU VAL TYR PHE ALA MET THR SEQRES 4 A 283 ALA ARG THR THR ALA PRO ASN TYR ARG LEU SER ALA ASN SEQRES 5 A 283 ILE SER ALA VAL VAL MET VAL SER ALA ALA LEU GLU LEU SEQRES 6 A 283 GLY GLN LEU TRP LEU LEU TRP ASN GLU SER PHE GLN TRP SEQRES 7 A 283 ALA GLU LEU GLN GLY SER PHE VAL PRO VAL ALA GLY GLU SEQRES 8 A 283 ARG PHE SER ASN GLY TYR ARG TYR MET ASN TRP LEU ILE SEQRES 9 A 283 ASP VAL PRO MET LEU ALA THR GLN LEU VAL VAL VAL CYS SEQRES 10 A 283 GLY PHE VAL GLY THR GLU LEU ARG ASN ARG TRP ALA LYS SEQRES 11 A 283 LEU THR ILE ALA GLY VAL LEU MET ILE LEU THR GLY TYR SEQRES 12 A 283 VAL GLY GLN TYR PHE GLU PRO ALA VAL ALA GLY VAL PRO SEQRES 13 A 283 GLY TYR GLU GLY ALA GLU GLN PHE TRP ILE TRP GLY ILE SEQRES 14 A 283 ILE SER THR ALA PHE PHE VAL TRP MET LEU LEU ILE LEU SEQRES 15 A 283 ALA ASN ALA VAL ARG ASN PRO GLN GLY ALA PRO SER ASP SEQRES 16 A 283 GLU VAL ARG SER ARG LEU LYS PHE CYS PHE TRP PHE LEU SEQRES 17 A 283 LEU ALA THR TRP SER ILE TYR PRO PHE ALA TYR ALA MET SEQRES 18 A 283 PRO LEU PHE ALA PRO THR ALA ASP GLY VAL VAL VAL ARG SEQRES 19 A 283 GLN VAL ILE TYR THR VAL ALA ASP VAL SER SER LYR LEU SEQRES 20 A 283 VAL PHE GLY VAL ILE LEU SER GLN VAL ALA LEU ARG ARG SEQRES 21 A 283 SER ALA GLU GLU GLY PHE GLU PRO ALA ARG VAL ALA SER SEQRES 22 A 283 GLY GLU PHE ASP GLU ARG ALA PRO ALA ARG MODRES 8QLF LYR A 246 LYS MODIFIED RESIDUE HET LYR A 246 29 HET LFA A 401 14 HET OLA A 402 12 HET LFA A 403 12 HET LFA A 404 9 HET LFA A 405 12 HET LFA A 406 20 HET LFA A 407 11 HET LFA A 408 11 HET OLA A 409 19 HET LFA A 410 20 HET LFA A 411 11 HET LFA A 412 3 HET LFA A 413 14 HET LFA A 414 11 HET LFA A 415 9 HET LFA A 416 8 HET LFA A 417 9 HET LFA A 418 9 HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM LFA EICOSANE HETNAM OLA OLEIC ACID HETSYN LFA LIPID FRAGMENT FORMUL 1 LYR C26 H42 N2 O2 FORMUL 2 LFA 16(C20 H42) FORMUL 3 OLA 2(C18 H34 O2) FORMUL 20 HOH *112(H2 O) HELIX 1 AA1 SER A 3 LEU A 8 5 6 HELIX 2 AA2 ASP A 11 THR A 43 1 33 HELIX 3 AA3 ALA A 44 SER A 75 1 32 HELIX 4 AA4 SER A 94 TYR A 97 5 4 HELIX 5 AA5 ARG A 98 CYS A 117 1 20 HELIX 6 AA6 VAL A 120 TYR A 147 1 28 HELIX 7 AA7 PHE A 148 ALA A 153 1 6 HELIX 8 AA8 GLY A 160 ASN A 188 1 29 HELIX 9 AA9 SER A 194 SER A 213 1 20 HELIX 10 AB1 SER A 213 ALA A 220 1 8 HELIX 11 AB2 MET A 221 ALA A 225 5 5 HELIX 12 AB3 THR A 227 GLU A 264 1 38 HELIX 13 AB4 PHE A 266 VAL A 271 1 6 SHEET 1 AA1 2 PHE A 76 ALA A 79 0 SHEET 2 AA1 2 SER A 84 PRO A 87 -1 O SER A 84 N ALA A 79 LINK C SER A 245 N LYR A 246 1555 1555 1.34 LINK C LYR A 246 N LEU A 247 1555 1555 1.34 CRYST1 53.382 53.382 364.842 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018733 0.010815 0.000000 0.00000 SCALE2 0.000000 0.021631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002741 0.00000