HEADER PEPTIDE BINDING PROTEIN 20-SEP-23 8QLK TITLE CRYSTAL STRUCTURE OF THE PNEUMOCOCCAL SUBSTRATE-BINDING PROTEIN ALIB TITLE 2 IN COMPLEX WITH PEPTIDE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOPEPTIDE-BINDING PROTEIN ALIB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALA-ILE-GLN-SER-GLU-LYS-ALA-ARG-LYS-HIS-ASN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 1313; SOURCE 4 GENE: ALIB, SPR1382; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS PERMEASE, PNEUMOCOCCUS, ALIB, PEPTIDE; SUBSTRATE-BINDING PROTEIN, KEYWDS 2 PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ALCORLO,M.R.ABDULLAH,S.HAMMERSCHMIDT,J.HERMOSO REVDAT 2 03-JUL-24 8QLK 1 JRNL REVDAT 1 22-MAY-24 8QLK 0 JRNL AUTH M.ALCORLO,M.R.ABDULLAH,L.STEIL,F.SOTOMAYOR,L.LOPEZ-DE ORO, JRNL AUTH 2 S.DE CASTRO,S.VELAZQUEZ,T.P.KOHLER,E.JIMENEZ,A.MEDINA, JRNL AUTH 3 I.USON,L.E.KELLER,J.L.BRADSHAW,L.S.MCDANIEL,M.J.CAMARASA, JRNL AUTH 4 U.VOLKER,S.HAMMERSCHMIDT,J.A.HERMOSO JRNL TITL MOLECULAR AND STRUCTURAL BASIS OF OLIGOPEPTIDE RECOGNITION JRNL TITL 2 BY THE AMI TRANSPORTER SYSTEM IN PNEUMOCOCCI. JRNL REF PLOS PATHOG. V. 20 11883 2024 JRNL REFN ESSN 1553-7374 JRNL PMID 38838057 JRNL DOI 10.1371/JOURNAL.PPAT.1011883 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 27565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2440 - 4.9322 0.99 2676 129 0.1546 0.1766 REMARK 3 2 4.9322 - 3.9154 0.99 2661 143 0.1346 0.1819 REMARK 3 3 3.9154 - 3.4206 0.99 2632 136 0.1488 0.1837 REMARK 3 4 3.4206 - 3.1079 0.99 2612 135 0.1640 0.2121 REMARK 3 5 3.1079 - 2.8852 0.99 2661 121 0.1797 0.2532 REMARK 3 6 2.8852 - 2.7151 0.98 2587 158 0.1768 0.2720 REMARK 3 7 2.7151 - 2.5791 0.97 2562 150 0.1951 0.2775 REMARK 3 8 2.5791 - 2.4669 0.98 2575 146 0.2085 0.2743 REMARK 3 9 2.4669 - 2.3719 0.98 2617 112 0.2087 0.3014 REMARK 3 10 2.3719 - 2.2900 0.98 2608 144 0.2074 0.2857 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5148 REMARK 3 ANGLE : 0.620 6978 REMARK 3 CHIRALITY : 0.043 753 REMARK 3 PLANARITY : 0.004 908 REMARK 3 DIHEDRAL : 3.754 4262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 32:125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.958 -28.587 4.450 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.1402 REMARK 3 T33: 0.1702 T12: -0.0346 REMARK 3 T13: -0.0050 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.3447 L22: 0.5043 REMARK 3 L33: 0.3000 L12: -0.0972 REMARK 3 L13: 0.1308 L23: 0.2645 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0678 S13: -0.0390 REMARK 3 S21: -0.0463 S22: 0.0267 S23: -0.0601 REMARK 3 S31: 0.0953 S32: 0.0135 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 126:242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.842 -25.957 8.091 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.1325 REMARK 3 T33: 0.1239 T12: -0.0210 REMARK 3 T13: -0.0069 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.3953 L22: 0.2850 REMARK 3 L33: 0.3787 L12: -0.1176 REMARK 3 L13: 0.1229 L23: 0.2314 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.0156 S13: -0.0006 REMARK 3 S21: 0.0202 S22: 0.0398 S23: -0.0654 REMARK 3 S31: 0.0464 S32: 0.0964 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 243:317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.455 -6.069 -5.306 REMARK 3 T TENSOR REMARK 3 T11: 0.1991 T22: 0.1628 REMARK 3 T33: 0.1826 T12: -0.0078 REMARK 3 T13: -0.0142 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.4158 L22: 0.3515 REMARK 3 L33: 0.4210 L12: 0.1936 REMARK 3 L13: -0.0677 L23: 0.4650 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: 0.0906 S13: 0.0526 REMARK 3 S21: -0.1019 S22: -0.0032 S23: -0.0141 REMARK 3 S31: -0.1163 S32: -0.0162 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 318:424 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.236 -1.036 16.962 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.1729 REMARK 3 T33: 0.1556 T12: 0.0097 REMARK 3 T13: 0.0123 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.2300 L22: 0.5213 REMARK 3 L33: 0.4982 L12: 0.0089 REMARK 3 L13: 0.1854 L23: -0.0675 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0846 S13: 0.0039 REMARK 3 S21: 0.0346 S22: -0.0523 S23: 0.1014 REMARK 3 S31: -0.0405 S32: -0.2218 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 425:522 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.811 1.079 9.550 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.1442 REMARK 3 T33: 0.1724 T12: -0.0007 REMARK 3 T13: -0.0130 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.2517 L22: 0.3603 REMARK 3 L33: 0.3142 L12: -0.1002 REMARK 3 L13: -0.1830 L23: 0.4088 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0460 S13: 0.0737 REMARK 3 S21: -0.0561 S22: 0.0375 S23: -0.0670 REMARK 3 S31: -0.0514 S32: -0.0640 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 523:553 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.335 -9.148 28.033 REMARK 3 T TENSOR REMARK 3 T11: 0.3262 T22: 0.2448 REMARK 3 T33: 0.1980 T12: -0.0018 REMARK 3 T13: -0.0213 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.1732 L22: 0.0733 REMARK 3 L33: 0.0873 L12: -0.0912 REMARK 3 L13: 0.1154 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.4329 S13: -0.0175 REMARK 3 S21: 0.2078 S22: -0.1073 S23: -0.1821 REMARK 3 S31: 0.0074 S32: 0.0223 S33: -0.0006 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 554:649 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.183 -24.063 5.247 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1986 REMARK 3 T33: 0.1678 T12: -0.0420 REMARK 3 T13: 0.0153 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.4956 L22: 0.2422 REMARK 3 L33: 0.4848 L12: -0.0023 REMARK 3 L13: 0.2260 L23: 0.1302 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0287 S13: -0.0913 REMARK 3 S21: 0.0366 S22: -0.0294 S23: 0.0598 REMARK 3 S31: 0.0416 S32: -0.1121 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.973 -9.752 5.685 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.2429 REMARK 3 T33: 0.2890 T12: -0.0433 REMARK 3 T13: 0.0829 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 0.0073 L22: 0.0057 REMARK 3 L33: 0.0071 L12: -0.0042 REMARK 3 L13: 0.0035 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: 0.0481 S13: 0.2034 REMARK 3 S21: -0.0666 S22: -0.1362 S23: 0.1836 REMARK 3 S31: -0.1192 S32: -0.1447 S33: 0.0001 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 6:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.393 -8.426 -2.591 REMARK 3 T TENSOR REMARK 3 T11: 0.5515 T22: 0.4970 REMARK 3 T33: 0.3820 T12: 0.1313 REMARK 3 T13: 0.0088 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0015 L22: 0.0048 REMARK 3 L33: 0.0002 L12: -0.0018 REMARK 3 L13: 0.0125 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: -0.0590 S13: -0.2454 REMARK 3 S21: 0.0558 S22: -0.1605 S23: 0.2494 REMARK 3 S31: -0.1742 S32: 0.0310 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133468. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27597 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 48.244 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 8% 2-PROPANOL AND REMARK 280 21% PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.75050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 559 CD - CE - NZ ANGL. DEV. = -15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 37 -158.85 -151.62 REMARK 500 SER A 79 -145.75 -147.16 REMARK 500 LYS A 225 18.82 57.04 REMARK 500 SER A 226 -56.29 -121.36 REMARK 500 ASP A 309 49.22 -142.17 REMARK 500 SER A 518 19.89 -141.60 REMARK 500 TYR A 612 -12.13 70.91 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QLK A 27 652 UNP P0A4G1 ALIB_STRR6 27 652 DBREF 8QLK B 1 11 PDB 8QLK 8QLK 1 11 SEQRES 1 A 626 ASN SER SER THR ALA SER LYS THR TYR ASN TYR VAL TYR SEQRES 2 A 626 SER SER ASP PRO SER SER LEU ASN TYR LEU ALA GLU ASN SEQRES 3 A 626 ARG ALA ALA THR SER ASP ILE VAL ALA ASN LEU VAL ASP SEQRES 4 A 626 GLY LEU LEU GLU ASN ASP GLN TYR GLY ASN ILE ILE PRO SEQRES 5 A 626 SER LEU ALA GLU ASP TRP THR VAL SER GLN ASP GLY LEU SEQRES 6 A 626 THR TYR THR TYR LYS LEU ARG LYS ASP ALA LYS TRP PHE SEQRES 7 A 626 THR SER GLU GLY GLU GLU TYR ALA PRO VAL THR ALA GLN SEQRES 8 A 626 ASP PHE VAL THR GLY LEU GLN TYR ALA ALA ASP LYS LYS SEQRES 9 A 626 SER GLU ALA LEU TYR LEU VAL GLN ASP SER VAL ALA GLY SEQRES 10 A 626 LEU ASP ASP TYR ILE THR GLY LYS THR SER ASP PHE SER SEQRES 11 A 626 THR VAL GLY VAL LYS ALA LEU ASP ASP GLN THR VAL GLN SEQRES 12 A 626 TYR THR LEU VAL LYS PRO GLU LEU TYR TRP ASN SER LYS SEQRES 13 A 626 THR LEU ALA THR ILE LEU PHE PRO VAL ASN ALA ASP PHE SEQRES 14 A 626 LEU LYS SER LYS GLY ASP ASP PHE GLY LYS ALA ASP PRO SEQRES 15 A 626 SER SER ILE LEU TYR ASN GLY PRO PHE LEU MET LYS ALA SEQRES 16 A 626 LEU VAL SER LYS SER ALA ILE GLU TYR LYS LYS ASN PRO SEQRES 17 A 626 ASN TYR TRP ASP ALA LYS ASN VAL PHE VAL ASP ASP VAL SEQRES 18 A 626 LYS LEU THR TYR TYR ASP GLY SER ASP GLN GLU SER LEU SEQRES 19 A 626 GLU ARG ASN PHE THR ALA GLY ALA TYR THR THR ALA ARG SEQRES 20 A 626 LEU PHE PRO ASN SER SER SER TYR GLU GLY ILE LYS GLU SEQRES 21 A 626 LYS TYR LYS ASN ASN ILE ILE TYR SER MET GLN ASN SER SEQRES 22 A 626 THR SER TYR PHE PHE ASN PHE ASN LEU ASP ARG LYS SER SEQRES 23 A 626 TYR ASN TYR THR SER LYS THR SER ASP ILE GLU LYS LYS SEQRES 24 A 626 SER THR GLN GLU ALA VAL LEU ASN LYS ASN PHE ARG GLN SEQRES 25 A 626 ALA ILE ASN PHE ALA PHE ASP ARG THR SER TYR GLY ALA SEQRES 26 A 626 GLN SER GLU GLY LYS GLU GLY ALA THR LYS ILE LEU ARG SEQRES 27 A 626 ASN LEU VAL VAL PRO PRO ASN PHE VAL SER ILE LYS GLY SEQRES 28 A 626 LYS ASP PHE GLY GLU VAL VAL ALA SER LYS MET VAL ASN SEQRES 29 A 626 TYR GLY LYS GLU TRP GLN GLY ILE ASN PHE ALA ASP GLY SEQRES 30 A 626 GLN ASP PRO TYR TYR ASN PRO GLU LYS ALA LYS ALA LYS SEQRES 31 A 626 PHE ALA GLU ALA LYS LYS GLU LEU GLU ALA LYS GLY VAL SEQRES 32 A 626 GLN PHE PRO ILE HIS LEU ASP LYS THR VAL GLU VAL THR SEQRES 33 A 626 ASP LYS VAL GLY ILE GLN GLY VAL SER SER ILE LYS GLN SEQRES 34 A 626 SER ILE GLU SER VAL LEU GLY SER ASP ASN VAL VAL ILE SEQRES 35 A 626 ASP ILE GLN GLN LEU THR SER ASP GLU PHE ASP SER SER SEQRES 36 A 626 GLY TYR PHE ALA GLN THR ALA ALA GLN LYS ASP TYR ASP SEQRES 37 A 626 LEU TYR HIS GLY GLY TRP GLY PRO ASP TYR GLN ASP PRO SEQRES 38 A 626 SER THR TYR LEU ASP ILE PHE ASN THR ASN SER GLY GLY SEQRES 39 A 626 PHE LEU GLN ASN LEU GLY LEU GLU PRO GLY GLU ALA ASN SEQRES 40 A 626 ASP LYS ALA LYS ALA VAL GLY LEU ASP VAL TYR THR GLN SEQRES 41 A 626 MET LEU GLU GLU ALA ASN LYS GLU GLN ASP PRO ALA LYS SEQRES 42 A 626 ARG TYR GLU LYS TYR ALA ASP ILE GLN ALA TRP LEU ILE SEQRES 43 A 626 ASP SER SER LEU VAL LEU PRO SER VAL SER ARG GLY GLY SEQRES 44 A 626 THR PRO SER LEU ARG ARG THR VAL PRO PHE ALA ALA ALA SEQRES 45 A 626 TYR GLY LEU THR GLY THR LYS GLY VAL GLU SER TYR LYS SEQRES 46 A 626 TYR LEU LYS VAL GLN ASP LYS ILE VAL THR THR ASP GLU SEQRES 47 A 626 TYR ALA LYS ALA ARG GLU LYS TRP LEU LYS GLU LYS GLU SEQRES 48 A 626 GLU SER ASN LYS LYS ALA GLN GLU GLU LEU ALA LYS HIS SEQRES 49 A 626 VAL LYS SEQRES 1 B 11 ALA ILE GLN SER GLU LYS ALA ARG LYS HIS ASN FORMUL 3 HOH *235(H2 O) HELIX 1 AA1 ARG A 53 ALA A 61 1 9 HELIX 2 AA2 ALA A 116 LYS A 129 1 14 HELIX 3 AA3 ALA A 133 VAL A 137 5 5 HELIX 4 AA4 GLY A 143 THR A 149 1 7 HELIX 5 AA5 ASP A 154 VAL A 158 5 5 HELIX 6 AA6 TYR A 178 THR A 183 1 6 HELIX 7 AA7 LEU A 184 PHE A 189 5 6 HELIX 8 AA8 ASN A 192 GLY A 200 1 9 HELIX 9 AA9 ASP A 201 PHE A 203 5 3 HELIX 10 AB1 ASP A 207 ILE A 211 5 5 HELIX 11 AB2 ASP A 238 VAL A 242 5 5 HELIX 12 AB3 GLU A 258 ALA A 266 1 9 HELIX 13 AB4 SER A 280 TYR A 288 1 9 HELIX 14 AB5 SER A 320 VAL A 331 1 12 HELIX 15 AB6 ASN A 333 PHE A 344 1 12 HELIX 16 AB7 ASP A 345 GLY A 355 1 11 HELIX 17 AB8 PHE A 380 MET A 388 1 9 HELIX 18 AB9 VAL A 389 TYR A 391 5 3 HELIX 19 AC1 ASN A 409 ALA A 426 1 18 HELIX 20 AC2 ASP A 443 GLY A 462 1 20 HELIX 21 AC3 THR A 474 GLY A 482 1 9 HELIX 22 AC4 THR A 487 LYS A 491 5 5 HELIX 23 AC5 PRO A 507 ASP A 512 1 6 HELIX 24 AC6 ILE A 513 ASN A 515 5 3 HELIX 25 AC7 PHE A 521 GLY A 526 5 6 HELIX 26 AC8 ASN A 533 VAL A 539 1 7 HELIX 27 AC9 GLY A 540 LYS A 553 1 14 HELIX 28 AD1 ASP A 556 SER A 575 1 20 HELIX 29 AD2 THR A 621 LEU A 647 1 27 HELIX 30 AD3 ALA A 648 VAL A 651 5 4 HELIX 31 AD4 LYS B 6 HIS B 10 5 5 SHEET 1 AA1 4 THR A 34 TYR A 39 0 SHEET 2 AA1 4 ASP A 246 TYR A 251 1 O THR A 250 N TYR A 37 SHEET 3 AA1 4 ALA A 227 LYS A 232 -1 N ILE A 228 O LEU A 249 SHEET 4 AA1 4 PHE A 217 VAL A 223 -1 N LEU A 218 O LYS A 231 SHEET 1 AA2 2 LEU A 68 ASN A 70 0 SHEET 2 AA2 2 ILE A 76 PRO A 78 -1 O ILE A 77 N GLU A 69 SHEET 1 AA3 4 ALA A 81 VAL A 86 0 SHEET 2 AA3 4 THR A 92 LEU A 97 -1 O LYS A 96 N ASP A 83 SHEET 3 AA3 4 THR A 167 THR A 171 -1 O VAL A 168 N TYR A 95 SHEET 4 AA3 4 VAL A 160 ASP A 164 -1 N LYS A 161 O GLN A 169 SHEET 1 AA4 2 LYS A 102 PHE A 104 0 SHEET 2 AA4 2 GLU A 110 PRO A 113 -1 O ALA A 112 N TRP A 103 SHEET 1 AA5 3 THR A 271 ARG A 273 0 SHEET 2 AA5 3 PRO A 587 ARG A 590 -1 O LEU A 589 N ALA A 272 SHEET 3 AA5 3 ILE A 293 TYR A 294 -1 N ILE A 293 O SER A 588 SHEET 1 AA6 4 VAL A 577 SER A 582 0 SHEET 2 AA6 4 SER A 301 PHE A 306 -1 N TYR A 302 O VAL A 581 SHEET 3 AA6 4 LEU A 495 TRP A 500 -1 O GLY A 498 N PHE A 303 SHEET 4 AA6 4 ILE B 2 SER B 4 -1 O GLN B 3 N GLY A 499 SHEET 1 AA7 2 SER A 374 ILE A 375 0 SHEET 2 AA7 2 LYS A 378 ASP A 379 -1 O LYS A 378 N ILE A 375 SHEET 1 AA8 2 ILE A 433 GLU A 440 0 SHEET 2 AA8 2 VAL A 466 LEU A 473 1 O GLN A 471 N LYS A 437 CISPEP 1 PHE A 431 PRO A 432 0 5.13 CRYST1 52.976 111.501 56.280 90.00 108.04 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018876 0.000000 0.006148 0.00000 SCALE2 0.000000 0.008969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018687 0.00000