HEADER FLAVOPROTEIN 25-SEP-23 8QMX TITLE OPR3 WILDTYPE IN COMPLEX WITH NADPH4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 12-OXOPHYTODIENOATE REDUCTASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 12-OXOPHYTODIENOATE-10,11-REDUCTASE 3,OPDA-REDUCTASE 3, COMPND 5 LEOPR3; COMPND 6 EC: 1.3.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 GENE: OPR3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OLD YELLOW ENZYME, ENE-REDUCTASE, FLAVOENZYME, NADPH, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BIJELIC,P.MACHEROUX,B.KERSCHBAUMER REVDAT 3 10-APR-24 8QMX 1 JRNL REVDAT 2 07-FEB-24 8QMX 1 JRNL REVDAT 1 17-JAN-24 8QMX 0 JRNL AUTH B.KERSCHBAUMER,M.G.TOTARO,M.FRIESS,R.BREINBAUER,A.BIJELIC, JRNL AUTH 2 P.MACHEROUX JRNL TITL LOOP 6 AND THE BETA-HAIRPIN FLAP ARE STRUCTURAL HOTSPOTS JRNL TITL 2 THAT DETERMINE COFACTOR SPECIFICITY IN THE FMN-DEPENDENT JRNL TITL 3 FAMILY OF ENE-REDUCTASES. JRNL REF FEBS J. V. 291 1560 2024 JRNL REFN ISSN 1742-464X JRNL PMID 38263933 JRNL DOI 10.1111/FEBS.17055 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_4761: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 155161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7758 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3400 - 4.3500 1.00 5083 267 0.1508 0.1705 REMARK 3 2 4.3500 - 3.4500 0.97 4839 255 0.1440 0.1581 REMARK 3 3 3.4500 - 3.0200 0.99 4952 261 0.1728 0.1772 REMARK 3 4 3.0200 - 2.7400 0.99 4949 260 0.1833 0.2246 REMARK 3 5 2.7400 - 2.5400 0.99 4935 260 0.1832 0.2096 REMARK 3 6 2.5400 - 2.3900 1.00 4978 262 0.1844 0.2030 REMARK 3 7 2.3900 - 2.2700 1.00 4946 260 0.1833 0.2084 REMARK 3 8 2.2700 - 2.1800 1.00 4984 262 0.1836 0.2186 REMARK 3 9 2.1800 - 2.0900 0.97 4831 255 0.1811 0.2074 REMARK 3 10 2.0900 - 2.0200 0.98 4894 257 0.1856 0.2198 REMARK 3 11 2.0200 - 1.9600 0.99 4916 259 0.1882 0.2071 REMARK 3 12 1.9600 - 1.9000 0.99 4913 259 0.1851 0.1939 REMARK 3 13 1.9000 - 1.8500 0.99 4909 258 0.1851 0.2111 REMARK 3 14 1.8500 - 1.8000 0.99 4876 257 0.1893 0.2105 REMARK 3 15 1.8000 - 1.7600 0.99 4954 261 0.1906 0.2336 REMARK 3 16 1.7600 - 1.7300 0.99 4912 258 0.1963 0.2168 REMARK 3 17 1.7300 - 1.6900 0.99 4916 259 0.1954 0.2233 REMARK 3 18 1.6900 - 1.6600 0.99 4918 259 0.2046 0.2223 REMARK 3 19 1.6600 - 1.6300 0.99 4962 262 0.2118 0.2462 REMARK 3 20 1.6300 - 1.6000 0.99 4867 256 0.2141 0.2261 REMARK 3 21 1.6000 - 1.5800 0.99 4971 262 0.2302 0.2516 REMARK 3 22 1.5800 - 1.5500 0.98 4829 254 0.2511 0.2678 REMARK 3 23 1.5500 - 1.5300 0.97 4826 254 0.2560 0.2646 REMARK 3 24 1.5300 - 1.5100 0.99 4890 258 0.2709 0.2796 REMARK 3 25 1.5100 - 1.4900 0.99 4893 258 0.2801 0.2930 REMARK 3 26 1.4900 - 1.4700 0.99 4909 257 0.2933 0.3321 REMARK 3 27 1.4700 - 1.4500 0.99 4860 256 0.3057 0.3168 REMARK 3 28 1.4500 - 1.4300 0.99 4937 259 0.3243 0.3357 REMARK 3 29 1.4300 - 1.4200 0.99 4880 257 0.3369 0.3370 REMARK 3 30 1.4200 - 1.4000 0.99 4874 256 0.3516 0.3525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 6047 REMARK 3 ANGLE : 1.376 8253 REMARK 3 CHIRALITY : 0.090 904 REMARK 3 PLANARITY : 0.011 1042 REMARK 3 DIHEDRAL : 16.009 2162 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03319 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 47.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES/TRIS, 50 MM AMMONIUM REMARK 280 SULFATE, 12% PEG8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.92500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 8 REMARK 465 ASN A 9 REMARK 465 ALA A 286 REMARK 465 TYR A 287 REMARK 465 GLY A 288 REMARK 465 GLN A 289 REMARK 465 THR A 290 REMARK 465 GLU A 291 REMARK 465 ALA A 292 REMARK 465 GLY A 293 REMARK 465 ARG A 294 REMARK 465 LEU A 295 REMARK 465 GLN A 385 REMARK 465 GLY A 386 REMARK 465 ASN A 387 REMARK 465 GLY A 388 REMARK 465 SER A 389 REMARK 465 ASN A 390 REMARK 465 GLY A 391 REMARK 465 PRO A 392 REMARK 465 LEU A 393 REMARK 465 SER A 394 REMARK 465 ARG A 395 REMARK 465 LEU A 396 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 ASP B 7 REMARK 465 GLY B 8 REMARK 465 ASN B 9 REMARK 465 GLY B 296 REMARK 465 SER B 297 REMARK 465 GLU B 298 REMARK 465 GLN B 385 REMARK 465 GLY B 386 REMARK 465 ASN B 387 REMARK 465 GLY B 388 REMARK 465 SER B 389 REMARK 465 ASN B 390 REMARK 465 GLY B 391 REMARK 465 PRO B 392 REMARK 465 LEU B 393 REMARK 465 SER B 394 REMARK 465 ARG B 395 REMARK 465 LEU B 396 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 90 CE NZ REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 HIS A 269 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 297 OG REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 HIS B 269 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 291 CG CD OE1 OE2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 295 CG CD1 CD2 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 GLU B 300 CG CD OE1 OE2 REMARK 470 GLU B 301 CG CD OE1 OE2 REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 306 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 325 CG CD OE1 OE2 REMARK 470 LYS B 367 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 670 O HOH B 719 2.13 REMARK 500 O HOH A 510 O HOH A 851 2.14 REMARK 500 O HOH B 584 O HOH B 707 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 657 O HOH B 670 2655 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 239 72.21 -150.32 REMARK 500 ALA A 247 79.82 -116.02 REMARK 500 ASP A 350 43.90 -93.66 REMARK 500 VAL A 375 -55.13 -120.25 REMARK 500 TYR A 378 -62.50 -126.85 REMARK 500 ILE B 80 30.84 -140.94 REMARK 500 ALA B 121 11.87 59.27 REMARK 500 ASN B 251 78.74 -152.92 REMARK 500 ALA B 286 -49.16 -131.49 REMARK 500 ASP B 350 42.14 -94.46 REMARK 500 VAL B 375 -53.04 -126.60 REMARK 500 TYR B 378 -62.94 -128.32 REMARK 500 PHE B 383 -166.43 -76.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 87 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 908 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 909 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH A 910 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH A 911 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 912 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B 750 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 751 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 6.70 ANGSTROMS DBREF 8QMX A 1 396 UNP Q9FEW9 OPR3_SOLLC 1 396 DBREF 8QMX B 1 396 UNP Q9FEW9 OPR3_SOLLC 1 396 SEQADV 8QMX HIS A -5 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS A -4 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS A -3 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS A -2 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS A -1 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS A 0 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS B -5 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS B -4 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS B -3 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS B -2 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS B -1 UNP Q9FEW9 EXPRESSION TAG SEQADV 8QMX HIS B 0 UNP Q9FEW9 EXPRESSION TAG SEQRES 1 A 402 HIS HIS HIS HIS HIS HIS MET ALA SER SER ALA GLN ASP SEQRES 2 A 402 GLY ASN ASN PRO LEU PHE SER PRO TYR LYS MET GLY LYS SEQRES 3 A 402 PHE ASN LEU SER HIS ARG VAL VAL LEU ALA PRO MET THR SEQRES 4 A 402 ARG CYS ARG ALA LEU ASN ASN ILE PRO GLN ALA ALA LEU SEQRES 5 A 402 GLY GLU TYR TYR GLU GLN ARG ALA THR ALA GLY GLY PHE SEQRES 6 A 402 LEU ILE THR GLU GLY THR MET ILE SER PRO THR SER ALA SEQRES 7 A 402 GLY PHE PRO HIS VAL PRO GLY ILE PHE THR LYS GLU GLN SEQRES 8 A 402 VAL ARG GLU TRP LYS LYS ILE VAL ASP VAL VAL HIS ALA SEQRES 9 A 402 LYS GLY ALA VAL ILE PHE CYS GLN LEU TRP HIS VAL GLY SEQRES 10 A 402 ARG ALA SER HIS GLU VAL TYR GLN PRO ALA GLY ALA ALA SEQRES 11 A 402 PRO ILE SER SER THR GLU LYS PRO ILE SER ASN ARG TRP SEQRES 12 A 402 ARG ILE LEU MET PRO ASP GLY THR HIS GLY ILE TYR PRO SEQRES 13 A 402 LYS PRO ARG ALA ILE GLY THR TYR GLU ILE SER GLN VAL SEQRES 14 A 402 VAL GLU ASP TYR ARG ARG SER ALA LEU ASN ALA ILE GLU SEQRES 15 A 402 ALA GLY PHE ASP GLY ILE GLU ILE HIS GLY ALA HIS GLY SEQRES 16 A 402 TYR LEU ILE ASP GLN PHE LEU LYS ASP GLY ILE ASN ASP SEQRES 17 A 402 ARG THR ASP GLU TYR GLY GLY SER LEU ALA ASN ARG CYS SEQRES 18 A 402 LYS PHE ILE THR GLN VAL VAL GLN ALA VAL VAL SER ALA SEQRES 19 A 402 ILE GLY ALA ASP ARG VAL GLY VAL ARG VAL SER PRO ALA SEQRES 20 A 402 ILE ASP HIS LEU ASP ALA MET ASP SER ASN PRO LEU SER SEQRES 21 A 402 LEU GLY LEU ALA VAL VAL GLU ARG LEU ASN LYS ILE GLN SEQRES 22 A 402 LEU HIS SER GLY SER LYS LEU ALA TYR LEU HIS VAL THR SEQRES 23 A 402 GLN PRO ARG TYR VAL ALA TYR GLY GLN THR GLU ALA GLY SEQRES 24 A 402 ARG LEU GLY SER GLU GLU GLU GLU ALA ARG LEU MET ARG SEQRES 25 A 402 THR LEU ARG ASN ALA TYR GLN GLY THR PHE ILE CYS SER SEQRES 26 A 402 GLY GLY TYR THR ARG GLU LEU GLY ILE GLU ALA VAL ALA SEQRES 27 A 402 GLN GLY ASP ALA ASP LEU VAL SER TYR GLY ARG LEU PHE SEQRES 28 A 402 ILE SER ASN PRO ASP LEU VAL MET ARG ILE LYS LEU ASN SEQRES 29 A 402 ALA PRO LEU ASN LYS TYR ASN ARG LYS THR PHE TYR THR SEQRES 30 A 402 GLN ASP PRO VAL VAL GLY TYR THR ASP TYR PRO PHE LEU SEQRES 31 A 402 GLN GLY ASN GLY SER ASN GLY PRO LEU SER ARG LEU SEQRES 1 B 402 HIS HIS HIS HIS HIS HIS MET ALA SER SER ALA GLN ASP SEQRES 2 B 402 GLY ASN ASN PRO LEU PHE SER PRO TYR LYS MET GLY LYS SEQRES 3 B 402 PHE ASN LEU SER HIS ARG VAL VAL LEU ALA PRO MET THR SEQRES 4 B 402 ARG CYS ARG ALA LEU ASN ASN ILE PRO GLN ALA ALA LEU SEQRES 5 B 402 GLY GLU TYR TYR GLU GLN ARG ALA THR ALA GLY GLY PHE SEQRES 6 B 402 LEU ILE THR GLU GLY THR MET ILE SER PRO THR SER ALA SEQRES 7 B 402 GLY PHE PRO HIS VAL PRO GLY ILE PHE THR LYS GLU GLN SEQRES 8 B 402 VAL ARG GLU TRP LYS LYS ILE VAL ASP VAL VAL HIS ALA SEQRES 9 B 402 LYS GLY ALA VAL ILE PHE CYS GLN LEU TRP HIS VAL GLY SEQRES 10 B 402 ARG ALA SER HIS GLU VAL TYR GLN PRO ALA GLY ALA ALA SEQRES 11 B 402 PRO ILE SER SER THR GLU LYS PRO ILE SER ASN ARG TRP SEQRES 12 B 402 ARG ILE LEU MET PRO ASP GLY THR HIS GLY ILE TYR PRO SEQRES 13 B 402 LYS PRO ARG ALA ILE GLY THR TYR GLU ILE SER GLN VAL SEQRES 14 B 402 VAL GLU ASP TYR ARG ARG SER ALA LEU ASN ALA ILE GLU SEQRES 15 B 402 ALA GLY PHE ASP GLY ILE GLU ILE HIS GLY ALA HIS GLY SEQRES 16 B 402 TYR LEU ILE ASP GLN PHE LEU LYS ASP GLY ILE ASN ASP SEQRES 17 B 402 ARG THR ASP GLU TYR GLY GLY SER LEU ALA ASN ARG CYS SEQRES 18 B 402 LYS PHE ILE THR GLN VAL VAL GLN ALA VAL VAL SER ALA SEQRES 19 B 402 ILE GLY ALA ASP ARG VAL GLY VAL ARG VAL SER PRO ALA SEQRES 20 B 402 ILE ASP HIS LEU ASP ALA MET ASP SER ASN PRO LEU SER SEQRES 21 B 402 LEU GLY LEU ALA VAL VAL GLU ARG LEU ASN LYS ILE GLN SEQRES 22 B 402 LEU HIS SER GLY SER LYS LEU ALA TYR LEU HIS VAL THR SEQRES 23 B 402 GLN PRO ARG TYR VAL ALA TYR GLY GLN THR GLU ALA GLY SEQRES 24 B 402 ARG LEU GLY SER GLU GLU GLU GLU ALA ARG LEU MET ARG SEQRES 25 B 402 THR LEU ARG ASN ALA TYR GLN GLY THR PHE ILE CYS SER SEQRES 26 B 402 GLY GLY TYR THR ARG GLU LEU GLY ILE GLU ALA VAL ALA SEQRES 27 B 402 GLN GLY ASP ALA ASP LEU VAL SER TYR GLY ARG LEU PHE SEQRES 28 B 402 ILE SER ASN PRO ASP LEU VAL MET ARG ILE LYS LEU ASN SEQRES 29 B 402 ALA PRO LEU ASN LYS TYR ASN ARG LYS THR PHE TYR THR SEQRES 30 B 402 GLN ASP PRO VAL VAL GLY TYR THR ASP TYR PRO PHE LEU SEQRES 31 B 402 GLN GLY ASN GLY SER ASN GLY PRO LEU SER ARG LEU HET FMN A 401 31 HET 5J8 A 402 48 HET TRS A 403 8 HET 5J8 A 404 48 HET FMN B 401 31 HET 5J8 B 402 48 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM 5J8 [[(2R,3S,4R,5R)-5-(5-AMINOCARBONYL-3,4-DIHYDRO-2H- HETNAM 2 5J8 PYRIDIN-1-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY- HETNAM 3 5J8 OXIDANYL-PHOSPHORYL] [(2R,3R,4R,5R)-5-(6-AMINOPURIN-9- HETNAM 4 5J8 YL)-3-OXIDANYL-4-PHOSPHONOOXY-OXOLAN-2-YL]METHYL HETNAM 5 5J8 HYDROGEN PHOSPHATE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN TRS TRIS BUFFER FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 5J8 3(C21 H32 N7 O17 P3) FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 9 HOH *664(H2 O) HELIX 1 AA1 ASN A 10 SER A 14 5 5 HELIX 2 AA2 ALA A 37 ILE A 41 5 5 HELIX 3 AA3 GLN A 43 ALA A 54 1 12 HELIX 4 AA4 THR A 82 LYS A 99 1 18 HELIX 5 AA5 HIS A 115 ALA A 123 5 9 HELIX 6 AA6 GLY A 156 ALA A 177 1 22 HELIX 7 AA7 TYR A 190 LYS A 197 1 8 HELIX 8 AA8 SER A 210 CYS A 215 1 6 HELIX 9 AA9 CYS A 215 GLY A 230 1 16 HELIX 10 AB1 ASN A 251 GLY A 271 1 21 HELIX 11 AB2 SER A 297 TYR A 312 1 16 HELIX 12 AB3 THR A 323 GLN A 333 1 11 HELIX 13 AB4 GLY A 342 ASN A 348 1 7 HELIX 14 AB5 ASP A 350 ASN A 358 1 9 HELIX 15 AB6 ASN A 365 PHE A 369 5 5 HELIX 16 AB7 ASN B 10 SER B 14 5 5 HELIX 17 AB8 ALA B 37 ILE B 41 5 5 HELIX 18 AB9 GLN B 43 ALA B 54 1 12 HELIX 19 AC1 THR B 82 ALA B 98 1 17 HELIX 20 AC2 HIS B 115 ALA B 123 5 9 HELIX 21 AC3 GLY B 156 ALA B 177 1 22 HELIX 22 AC4 TYR B 190 LYS B 197 1 8 HELIX 23 AC5 SER B 210 CYS B 215 1 6 HELIX 24 AC6 CYS B 215 GLY B 230 1 16 HELIX 25 AC7 ASP B 243 ALA B 247 5 5 HELIX 26 AC8 ASN B 251 GLY B 271 1 21 HELIX 27 AC9 GLU B 291 LEU B 295 5 5 HELIX 28 AD1 GLU B 300 TYR B 312 1 13 HELIX 29 AD2 THR B 323 GLN B 333 1 11 HELIX 30 AD3 GLY B 342 ASN B 348 1 7 HELIX 31 AD4 ASP B 350 ASN B 358 1 9 HELIX 32 AD5 ASN B 365 PHE B 369 5 5 SHEET 1 AA1 2 TYR A 16 MET A 18 0 SHEET 2 AA1 2 PHE A 21 LEU A 23 -1 O LEU A 23 N TYR A 16 SHEET 1 AA2 9 VAL A 27 LEU A 29 0 SHEET 2 AA2 9 PHE A 59 MET A 66 1 O PHE A 59 N LEU A 29 SHEET 3 AA2 9 VAL A 102 TRP A 108 1 O TRP A 108 N THR A 65 SHEET 4 AA2 9 GLY A 181 GLY A 186 1 O GLU A 183 N LEU A 107 SHEET 5 AA2 9 VAL A 234 VAL A 238 1 O GLY A 235 N ILE A 182 SHEET 6 AA2 9 TYR A 276 THR A 280 1 O HIS A 278 N VAL A 236 SHEET 7 AA2 9 PHE A 316 SER A 319 1 O ILE A 317 N LEU A 277 SHEET 8 AA2 9 LEU A 338 TYR A 341 1 O SER A 340 N CYS A 318 SHEET 9 AA2 9 VAL A 27 LEU A 29 1 N VAL A 28 O VAL A 339 SHEET 1 AA3 2 ILE A 126 SER A 127 0 SHEET 2 AA3 2 ARG A 153 ALA A 154 1 O ARG A 153 N SER A 127 SHEET 1 AA4 2 ARG A 138 LEU A 140 0 SHEET 2 AA4 2 HIS A 146 ILE A 148 -1 O GLY A 147 N ILE A 139 SHEET 1 AA5 2 TYR B 16 MET B 18 0 SHEET 2 AA5 2 PHE B 21 LEU B 23 -1 O PHE B 21 N MET B 18 SHEET 1 AA610 THR B 65 MET B 66 0 SHEET 2 AA610 VAL B 102 TRP B 108 1 O TRP B 108 N THR B 65 SHEET 3 AA610 GLY B 181 GLY B 186 1 O GLU B 183 N LEU B 107 SHEET 4 AA610 VAL B 234 VAL B 238 1 O GLY B 235 N ILE B 182 SHEET 5 AA610 TYR B 276 THR B 280 1 O HIS B 278 N VAL B 236 SHEET 6 AA610 PHE B 316 SER B 319 1 O ILE B 317 N LEU B 277 SHEET 7 AA610 LEU B 338 TYR B 341 1 O SER B 340 N CYS B 318 SHEET 8 AA610 VAL B 27 LEU B 29 1 N VAL B 28 O TYR B 341 SHEET 9 AA610 PHE B 59 ILE B 61 1 O PHE B 59 N LEU B 29 SHEET 10 AA610 VAL B 102 TRP B 108 1 O VAL B 102 N LEU B 60 SHEET 1 AA7 2 ILE B 126 SER B 127 0 SHEET 2 AA7 2 ARG B 153 ALA B 154 1 O ARG B 153 N SER B 127 SHEET 1 AA8 2 ILE B 139 LEU B 140 0 SHEET 2 AA8 2 HIS B 146 GLY B 147 -1 O GLY B 147 N ILE B 139 CRYST1 57.640 89.850 81.130 90.00 104.92 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017349 0.000000 0.004622 0.00000 SCALE2 0.000000 0.011130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012756 0.00000