data_8QO2 # _entry.id 8QO2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QO2 pdb_00008qo2 10.2210/pdb8qo2/pdb WWPDB D_1292133595 ? ? EMDB EMD-18520 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-03-06 ? 2 'EM metadata' 1 0 2024-03-06 ? 3 FSC 1 0 2024-03-06 ? 4 'Half map' 1 0 2024-03-06 1 5 'Half map' 1 0 2024-03-06 2 6 Image 1 0 2024-03-06 ? 7 'Primary map' 1 0 2024-03-06 ? 8 'Structure model' 1 1 2024-03-13 ? 9 FSC 1 0 2024-03-06 ? 10 'Half map' 1 0 2024-03-06 1 11 'Half map' 1 0 2024-03-06 2 12 Image 1 0 2024-03-06 ? 13 'Primary map' 1 0 2024-03-06 ? 14 'Structure model' 1 2 2024-04-24 ? 15 FSC 1 0 2024-03-06 ? 16 'Half map' 1 0 2024-03-06 1 17 'Half map' 1 0 2024-03-06 2 18 Image 1 0 2024-03-06 ? 19 'Primary map' 1 0 2024-03-06 ? 20 'Structure model' 1 3 2025-07-09 ? 21 'EM metadata' 1 1 2025-07-09 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? 8 9 FSC repository 'Initial release' ? ? 9 10 'Half map' repository 'Initial release' ? ? 10 11 'Half map' repository 'Initial release' ? ? 11 12 Image repository 'Initial release' ? ? 12 13 'Primary map' repository 'Initial release' ? ? 13 15 FSC repository 'Initial release' ? ? 14 16 'Half map' repository 'Initial release' ? ? 15 17 'Half map' repository 'Initial release' ? ? 16 18 Image repository 'Initial release' ? ? 17 19 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 8 'Structure model' 'Database references' 2 14 'Structure model' 'Database references' 3 20 'Structure model' 'Data collection' 4 20 'Structure model' 'Structure summary' 5 21 'EM metadata' 'Data processing' 6 21 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' citation 2 8 'Structure model' citation_author 3 14 'Structure model' citation 4 20 'Structure model' em_admin 5 20 'Structure model' em_software 6 20 'Structure model' pdbx_entry_details 7 21 'EM metadata' em_admin 8 21 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_citation.pdbx_database_id_PubMed' 2 8 'Structure model' '_citation.title' 3 14 'Structure model' '_citation.journal_volume' 4 14 'Structure model' '_citation.page_first' 5 14 'Structure model' '_citation.page_last' 6 20 'Structure model' '_em_admin.last_update' 7 20 'Structure model' '_em_software.name' 8 21 'EM metadata' '_em_admin.last_update' 9 21 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8QO2 _pdbx_database_status.recvd_initial_deposition_date 2023-09-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' _pdbx_database_related.db_id EMD-18520 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email janusz@iimcb.gov.pl _pdbx_contact_author.name_first Janusz _pdbx_contact_author.name_last Bujnicki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6633-165X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Moura, T.R.' 1 0000-0001-5492-8419 'Purta, E.' 2 0000-0003-0960-548X 'Bernat, A.' 3 0000-0002-5555-9464 'Baulin, E.' 4 0000-0003-4694-9783 'Mukherjee, S.' 5 0000-0002-4361-0103 'Bujnicki, J.M.' 6 0000-0002-6633-165X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 3419 _citation.page_last 3432 _citation.title ;Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae144 _citation.pdbx_database_id_PubMed 38426934 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de Moura, T.R.' 1 ? primary 'Purta, E.' 2 ? primary 'Bernat, A.' 3 ? primary 'Martin-Cuevas, E.M.' 4 ? primary 'Kurkowska, M.' 5 ? primary 'Baulin, E.F.' 6 ? primary 'Mukherjee, S.' 7 ? primary 'Nowak, J.' 8 ? primary 'Biela, A.P.' 9 ? primary 'Rawski, M.' 10 ? primary 'Glatt, S.' 11 ? primary 'Moreno-Herrero, F.' 12 ? primary 'Bujnicki, J.M.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description OC43-CoV-SL5 _entity.formula_weight 71566.438 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;UUCUGCUGUUAACAGCUUUCAGCCAGGGACGUGUUGUAUCCUAGGCAGUGGCCCUCCCAUAGGUCACAAUGUCGAAGAUC AACAAAUACGGUCUCGAACUACACUGGGCUCCAGAAUUUCCAUGGAUGUUUGAGGACGCAGAGGAGAAGUUGGACAACCC UAGUAGUUCAGAGGUGGAUAUGAUUUGCUCCACCACUGCGCAAAAGCUGGAAACAGACGGAA ; _entity_poly.pdbx_seq_one_letter_code_can ;UUCUGCUGUUAACAGCUUUCAGCCAGGGACGUGUUGUAUCCUAGGCAGUGGCCCUCCCAUAGGUCACAAUGUCGAAGAUC AACAAAUACGGUCUCGAACUACACUGGGCUCCAGAAUUUCCAUGGAUGUUUGAGGACGCAGAGGAGAAGUUGGACAACCC UAGUAGUUCAGAGGUGGAUAUGAUUUGCUCCACCACUGCGCAAAAGCUGGAAACAGACGGAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 C n 1 4 U n 1 5 G n 1 6 C n 1 7 U n 1 8 G n 1 9 U n 1 10 U n 1 11 A n 1 12 A n 1 13 C n 1 14 A n 1 15 G n 1 16 C n 1 17 U n 1 18 U n 1 19 U n 1 20 C n 1 21 A n 1 22 G n 1 23 C n 1 24 C n 1 25 A n 1 26 G n 1 27 G n 1 28 G n 1 29 A n 1 30 C n 1 31 G n 1 32 U n 1 33 G n 1 34 U n 1 35 U n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 C n 1 41 C n 1 42 U n 1 43 A n 1 44 G n 1 45 G n 1 46 C n 1 47 A n 1 48 G n 1 49 U n 1 50 G n 1 51 G n 1 52 C n 1 53 C n 1 54 C n 1 55 U n 1 56 C n 1 57 C n 1 58 C n 1 59 A n 1 60 U n 1 61 A n 1 62 G n 1 63 G n 1 64 U n 1 65 C n 1 66 A n 1 67 C n 1 68 A n 1 69 A n 1 70 U n 1 71 G n 1 72 U n 1 73 C n 1 74 G n 1 75 A n 1 76 A n 1 77 G n 1 78 A n 1 79 U n 1 80 C n 1 81 A n 1 82 A n 1 83 C n 1 84 A n 1 85 A n 1 86 A n 1 87 U n 1 88 A n 1 89 C n 1 90 G n 1 91 G n 1 92 U n 1 93 C n 1 94 U n 1 95 C n 1 96 G n 1 97 A n 1 98 A n 1 99 C n 1 100 U n 1 101 A n 1 102 C n 1 103 A n 1 104 C n 1 105 U n 1 106 G n 1 107 G n 1 108 G n 1 109 C n 1 110 U n 1 111 C n 1 112 C n 1 113 A n 1 114 G n 1 115 A n 1 116 A n 1 117 U n 1 118 U n 1 119 U n 1 120 C n 1 121 C n 1 122 A n 1 123 U n 1 124 G n 1 125 G n 1 126 A n 1 127 U n 1 128 G n 1 129 U n 1 130 U n 1 131 U n 1 132 G n 1 133 A n 1 134 G n 1 135 G n 1 136 A n 1 137 C n 1 138 G n 1 139 C n 1 140 A n 1 141 G n 1 142 A n 1 143 G n 1 144 G n 1 145 A n 1 146 G n 1 147 A n 1 148 A n 1 149 G n 1 150 U n 1 151 U n 1 152 G n 1 153 G n 1 154 A n 1 155 C n 1 156 A n 1 157 A n 1 158 C n 1 159 C n 1 160 C n 1 161 U n 1 162 A n 1 163 G n 1 164 U n 1 165 A n 1 166 G n 1 167 U n 1 168 U n 1 169 C n 1 170 A n 1 171 G n 1 172 A n 1 173 G n 1 174 G n 1 175 U n 1 176 G n 1 177 G n 1 178 A n 1 179 U n 1 180 A n 1 181 U n 1 182 G n 1 183 A n 1 184 U n 1 185 U n 1 186 U n 1 187 G n 1 188 C n 1 189 U n 1 190 C n 1 191 C n 1 192 A n 1 193 C n 1 194 C n 1 195 A n 1 196 C n 1 197 U n 1 198 G n 1 199 C n 1 200 G n 1 201 C n 1 202 A n 1 203 A n 1 204 A n 1 205 A n 1 206 G n 1 207 C n 1 208 U n 1 209 G n 1 210 G n 1 211 A n 1 212 A n 1 213 A n 1 214 C n 1 215 A n 1 216 G n 1 217 A n 1 218 C n 1 219 G n 1 220 G n 1 221 A n 1 222 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 222 _pdbx_entity_src_syn.organism_scientific 'Human coronavirus OC43' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 31631 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 143 143 U U A . n A 1 2 U 2 144 144 U U A . n A 1 3 C 3 145 145 C C A . n A 1 4 U 4 146 146 U U A . n A 1 5 G 5 147 147 G G A . n A 1 6 C 6 148 148 C C A . n A 1 7 U 7 149 149 U U A . n A 1 8 G 8 150 150 G G A . n A 1 9 U 9 151 151 U U A . n A 1 10 U 10 152 152 U U A . n A 1 11 A 11 153 153 A A A . n A 1 12 A 12 154 154 A A A . n A 1 13 C 13 155 155 C C A . n A 1 14 A 14 156 156 A A A . n A 1 15 G 15 157 157 G G A . n A 1 16 C 16 158 158 C C A . n A 1 17 U 17 159 159 U U A . n A 1 18 U 18 160 160 U U A . n A 1 19 U 19 161 161 U U A . n A 1 20 C 20 162 162 C C A . n A 1 21 A 21 163 163 A A A . n A 1 22 G 22 164 164 G G A . n A 1 23 C 23 165 165 C C A . n A 1 24 C 24 166 166 C C A . n A 1 25 A 25 167 167 A A A . n A 1 26 G 26 168 168 G G A . n A 1 27 G 27 169 169 G G A . n A 1 28 G 28 170 170 G G A . n A 1 29 A 29 171 171 A A A . n A 1 30 C 30 172 172 C C A . n A 1 31 G 31 173 173 G G A . n A 1 32 U 32 174 174 U U A . n A 1 33 G 33 175 175 G G A . n A 1 34 U 34 176 176 U U A . n A 1 35 U 35 177 177 U U A . n A 1 36 G 36 178 178 G G A . n A 1 37 U 37 179 179 U U A . n A 1 38 A 38 180 180 A A A . n A 1 39 U 39 181 181 U U A . n A 1 40 C 40 182 182 C C A . n A 1 41 C 41 183 183 C C A . n A 1 42 U 42 184 184 U U A . n A 1 43 A 43 185 185 A A A . n A 1 44 G 44 186 186 G G A . n A 1 45 G 45 187 187 G G A . n A 1 46 C 46 188 188 C C A . n A 1 47 A 47 189 189 A A A . n A 1 48 G 48 190 190 G G A . n A 1 49 U 49 191 191 U U A . n A 1 50 G 50 192 192 G G A . n A 1 51 G 51 193 193 G G A . n A 1 52 C 52 194 194 C C A . n A 1 53 C 53 195 195 C C A . n A 1 54 C 54 196 196 C C A . n A 1 55 U 55 197 197 U U A . n A 1 56 C 56 198 198 C C A . n A 1 57 C 57 199 199 C C A . n A 1 58 C 58 200 200 C C A . n A 1 59 A 59 201 201 A A A . n A 1 60 U 60 202 202 U U A . n A 1 61 A 61 203 203 A A A . n A 1 62 G 62 204 204 G G A . n A 1 63 G 63 205 205 G G A . n A 1 64 U 64 206 206 U U A . n A 1 65 C 65 207 207 C C A . n A 1 66 A 66 208 208 A A A . n A 1 67 C 67 209 209 C C A . n A 1 68 A 68 210 210 A A A . n A 1 69 A 69 211 211 A A A . n A 1 70 U 70 212 212 U U A . n A 1 71 G 71 213 213 G G A . n A 1 72 U 72 214 214 U U A . n A 1 73 C 73 215 215 C C A . n A 1 74 G 74 216 216 G G A . n A 1 75 A 75 217 217 A A A . n A 1 76 A 76 218 218 A A A . n A 1 77 G 77 219 219 G G A . n A 1 78 A 78 220 220 A A A . n A 1 79 U 79 221 221 U U A . n A 1 80 C 80 222 222 C C A . n A 1 81 A 81 223 223 A A A . n A 1 82 A 82 224 224 A A A . n A 1 83 C 83 225 225 C C A . n A 1 84 A 84 226 226 A A A . n A 1 85 A 85 227 227 A A A . n A 1 86 A 86 228 228 A A A . n A 1 87 U 87 229 229 U U A . n A 1 88 A 88 230 230 A A A . n A 1 89 C 89 231 231 C C A . n A 1 90 G 90 232 232 G G A . n A 1 91 G 91 233 233 G G A . n A 1 92 U 92 234 234 U U A . n A 1 93 C 93 235 235 C C A . n A 1 94 U 94 236 236 U U A . n A 1 95 C 95 237 237 C C A . n A 1 96 G 96 238 238 G G A . n A 1 97 A 97 239 239 A A A . n A 1 98 A 98 240 240 A A A . n A 1 99 C 99 241 241 C C A . n A 1 100 U 100 242 242 U U A . n A 1 101 A 101 243 243 A A A . n A 1 102 C 102 244 244 C C A . n A 1 103 A 103 245 245 A A A . n A 1 104 C 104 246 246 C C A . n A 1 105 U 105 247 247 U U A . n A 1 106 G 106 248 248 G G A . n A 1 107 G 107 249 249 G G A . n A 1 108 G 108 250 250 G G A . n A 1 109 C 109 251 251 C C A . n A 1 110 U 110 252 252 U U A . n A 1 111 C 111 253 253 C C A . n A 1 112 C 112 254 254 C C A . n A 1 113 A 113 255 255 A A A . n A 1 114 G 114 256 256 G G A . n A 1 115 A 115 257 257 A A A . n A 1 116 A 116 258 258 A A A . n A 1 117 U 117 259 259 U U A . n A 1 118 U 118 260 260 U U A . n A 1 119 U 119 261 261 U U A . n A 1 120 C 120 262 262 C C A . n A 1 121 C 121 263 263 C C A . n A 1 122 A 122 264 264 A A A . n A 1 123 U 123 265 265 U U A . n A 1 124 G 124 266 266 G G A . n A 1 125 G 125 267 267 G G A . n A 1 126 A 126 268 268 A A A . n A 1 127 U 127 269 269 U U A . n A 1 128 G 128 270 270 G G A . n A 1 129 U 129 271 271 U U A . n A 1 130 U 130 272 272 U U A . n A 1 131 U 131 273 273 U U A . n A 1 132 G 132 274 274 G G A . n A 1 133 A 133 275 275 A A A . n A 1 134 G 134 276 276 G G A . n A 1 135 G 135 277 277 G G A . n A 1 136 A 136 278 278 A A A . n A 1 137 C 137 279 279 C C A . n A 1 138 G 138 280 280 G G A . n A 1 139 C 139 281 281 C C A . n A 1 140 A 140 282 282 A A A . n A 1 141 G 141 283 283 G G A . n A 1 142 A 142 284 284 A A A . n A 1 143 G 143 285 285 G G A . n A 1 144 G 144 286 286 G G A . n A 1 145 A 145 287 287 A A A . n A 1 146 G 146 288 288 G G A . n A 1 147 A 147 289 289 A A A . n A 1 148 A 148 290 290 A A A . n A 1 149 G 149 291 291 G G A . n A 1 150 U 150 292 292 U U A . n A 1 151 U 151 293 293 U U A . n A 1 152 G 152 294 294 G G A . n A 1 153 G 153 295 295 G G A . n A 1 154 A 154 296 296 A A A . n A 1 155 C 155 297 297 C C A . n A 1 156 A 156 298 298 A A A . n A 1 157 A 157 299 299 A A A . n A 1 158 C 158 300 300 C C A . n A 1 159 C 159 301 301 C C A . n A 1 160 C 160 302 302 C C A . n A 1 161 U 161 303 303 U U A . n A 1 162 A 162 304 304 A A A . n A 1 163 G 163 305 305 G G A . n A 1 164 U 164 306 306 U U A . n A 1 165 A 165 307 307 A A A . n A 1 166 G 166 308 308 G G A . n A 1 167 U 167 309 309 U U A . n A 1 168 U 168 310 310 U U A . n A 1 169 C 169 311 311 C C A . n A 1 170 A 170 312 312 A A A . n A 1 171 G 171 313 313 G G A . n A 1 172 A 172 314 314 A A A . n A 1 173 G 173 315 315 G G A . n A 1 174 G 174 316 316 G G A . n A 1 175 U 175 317 317 U U A . n A 1 176 G 176 318 318 G G A . n A 1 177 G 177 319 319 G G A . n A 1 178 A 178 320 320 A A A . n A 1 179 U 179 321 321 U U A . n A 1 180 A 180 322 322 A A A . n A 1 181 U 181 323 323 U U A . n A 1 182 G 182 324 324 G G A . n A 1 183 A 183 325 325 A A A . n A 1 184 U 184 326 326 U U A . n A 1 185 U 185 327 327 U U A . n A 1 186 U 186 328 328 U U A . n A 1 187 G 187 329 329 G G A . n A 1 188 C 188 330 330 C C A . n A 1 189 U 189 331 331 U U A . n A 1 190 C 190 332 332 C C A . n A 1 191 C 191 333 333 C C A . n A 1 192 A 192 334 334 A A A . n A 1 193 C 193 335 335 C C A . n A 1 194 C 194 336 336 C C A . n A 1 195 A 195 337 337 A A A . n A 1 196 C 196 338 338 C C A . n A 1 197 U 197 339 339 U U A . n A 1 198 G 198 340 340 G G A . n A 1 199 C 199 341 341 C C A . n A 1 200 G 200 342 342 G G A . n A 1 201 C 201 343 343 C C A . n A 1 202 A 202 344 344 A A A . n A 1 203 A 203 345 345 A A A . n A 1 204 A 204 346 346 A A A . n A 1 205 A 205 347 347 A A A . n A 1 206 G 206 348 348 G G A . n A 1 207 C 207 349 349 C C A . n A 1 208 U 208 350 350 U U A . n A 1 209 G 209 351 351 G G A . n A 1 210 G 210 352 352 G G A . n A 1 211 A 211 353 353 A A A . n A 1 212 A 212 354 354 A A A . n A 1 213 A 213 355 355 A A A . n A 1 214 C 214 356 356 C C A . n A 1 215 A 215 357 357 A A A . n A 1 216 G 216 358 358 G G A . n A 1 217 A 217 359 359 A A A . n A 1 218 C 218 360 360 C C A . n A 1 219 G 219 361 361 G G A . n A 1 220 G 220 362 362 G G A . n A 1 221 A 221 363 363 A A A . n A 1 222 A 222 364 364 A A A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8QO2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8QO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QO2 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8QO2 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 5302 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.527 ? 8263 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 17.996 ? 2661 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.022 ? 1110 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 222 ? f_plane_restr ? ? # _struct.entry_id 8QO2 _struct.title 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QO2 _struct_keywords.text 'RNA structure, 5-proximal region, Coronavirus, Cryo-EM, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code OK073091.1 _struct_ref.pdbx_db_accession OK073091.1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;UUCUGCUGUUAACAGCUUUCAGCCAGGGACGUGUUGUAUCCUAGGCAGUGGCCCUCCCAUAGGUCACAAUGUCGAAGAUC AACAAAUACGGUCUCGAACUACACUGGGCUCCAGAAUUUCCAUGGAUGUUUGAGGACGCAGAGGAGAAGUUGGACAACCC UAGUAGUUCAGAGGUGGAUAUGAUUUGCUCCACCACUGCGCAAAAGCUGGAAACAGACGGAA ; _struct_ref.pdbx_align_begin 143 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8QO2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 222 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession OK073091.1 _struct_ref_seq.db_align_beg 143 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 364 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 143 _struct_ref_seq.pdbx_auth_seq_align_end 364 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 222 N1 ? ? A U 143 A A 364 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 222 N6 ? ? A U 143 A A 364 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 221 N6 ? ? A U 144 A A 363 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog4 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 220 N1 ? ? A C 145 A G 362 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 220 O6 ? ? A C 145 A G 362 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 220 N2 ? ? A C 145 A G 362 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 219 O6 ? ? A U 146 A G 361 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 219 N1 ? ? A U 146 A G 361 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A G 5 N1 ? ? ? 1_555 A A 217 N1 ? ? A G 147 A A 359 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog10 hydrog ? ? A G 5 O6 ? ? ? 1_555 A A 217 N6 ? ? A G 147 A A 359 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 218 N3 ? ? A G 147 A C 360 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 218 O2 ? ? A G 147 A C 360 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 218 N4 ? ? A G 147 A C 360 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 216 O6 ? ? A C 148 A G 358 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog15 hydrog ? ? A C 6 N3 ? ? ? 1_555 A A 217 N6 ? ? A C 148 A A 359 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 216 O6 ? ? A U 149 A G 358 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 216 N1 ? ? A U 149 A G 358 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 214 N3 ? ? A G 150 A C 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 214 O2 ? ? A G 150 A C 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 214 N4 ? ? A G 150 A C 356 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 213 N1 ? ? A U 151 A A 355 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 213 N6 ? ? A U 151 A A 355 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 212 N6 ? ? A U 152 A A 354 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog24 hydrog ? ? A A 12 N1 ? ? ? 1_555 A G 210 N1 ? ? A A 154 A G 352 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog25 hydrog ? ? A A 12 N6 ? ? ? 1_555 A G 210 O6 ? ? A A 154 A G 352 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog26 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 209 O6 ? ? A C 155 A G 351 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog27 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 207 N4 ? ? A G 157 A C 349 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog28 hydrog ? ? A G 15 N2 ? ? ? 1_555 A U 208 O2 ? ? A G 157 A U 350 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog29 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 206 N1 ? ? A C 158 A G 348 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 206 O6 ? ? A C 158 A G 348 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 206 N2 ? ? A C 158 A G 348 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 205 N1 ? ? A U 159 A A 347 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 205 N6 ? ? A U 159 A A 347 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 204 N1 ? ? A U 160 A A 346 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 18 O4 ? ? ? 1_555 A A 204 N6 ? ? A U 160 A A 346 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 203 N6 ? ? A U 161 A A 345 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog37 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 202 N3 ? ? A A 163 A A 344 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog38 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 200 N1 ? ? A C 165 A G 342 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 200 O6 ? ? A C 165 A G 342 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 200 N2 ? ? A C 165 A G 342 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 24 N4 ? ? ? 1_555 A G 198 O6 ? ? A C 166 A G 340 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog42 hydrog ? ? A C 24 N3 ? ? ? 1_555 A C 199 N4 ? ? A C 166 A C 341 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog43 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 195 N1 ? ? A G 168 A A 337 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 195 N6 ? ? A G 168 A A 337 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog45 hydrog ? ? A G 27 N1 ? ? ? 1_555 A U 94 O2 ? ? A G 169 A U 236 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A G 27 O6 ? ? ? 1_555 A U 94 N3 ? ? A G 169 A U 236 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog47 hydrog ? ? A C 30 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 172 A G 233 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog48 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 83 N3 ? ? A G 175 A C 225 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog49 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 82 N1 ? ? A U 177 A A 224 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog50 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 79 O2 ? ? A A 180 A U 221 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog51 hydrog ? ? A U 39 O4 ? ? ? 1_555 A U 79 N3 ? ? A U 181 A U 221 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog52 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 77 O6 ? ? A C 182 A G 219 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog53 hydrog ? ? A C 40 N4 ? ? ? 1_555 A A 78 N1 ? ? A C 182 A A 220 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 41 N3 ? ? ? 1_555 A G 77 N1 ? ? A C 183 A G 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 41 N4 ? ? ? 1_555 A G 77 O6 ? ? A C 183 A G 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 41 O2 ? ? ? 1_555 A G 77 N2 ? ? A C 183 A G 219 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 184 A A 217 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog58 hydrog ? ? A A 43 N6 ? ? ? 1_555 A G 74 O6 ? ? A A 185 A G 216 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 186 A C 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 186 A C 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 186 A C 215 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 44 N2 ? ? ? 1_555 A G 74 O6 ? ? A G 186 A G 216 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog63 hydrog ? ? A G 45 N1 ? ? ? 1_555 A U 72 O2 ? ? A G 187 A U 214 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog64 hydrog ? ? A G 45 O6 ? ? ? 1_555 A U 72 N3 ? ? A G 187 A U 214 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 188 A G 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 188 A G 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 188 A G 213 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 47 N7 ? ? ? 1_555 A C 67 N4 ? ? A A 189 A C 209 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog69 hydrog ? ? A A 47 N6 ? ? ? 1_555 A A 69 N1 ? ? A A 189 A A 211 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog70 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 190 A C 209 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog71 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 191 A A 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A U 49 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 191 A A 208 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 51 O6 ? ? ? 1_555 A G 63 N1 ? ? A G 193 A G 205 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog74 hydrog ? ? A C 52 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 194 A G 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 52 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 194 A G 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A C 52 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 194 A G 205 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 62 N1 ? ? A C 195 A G 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 53 N4 ? ? ? 1_555 A G 62 O6 ? ? A C 195 A G 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 62 N2 ? ? A C 195 A G 204 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 58 O2 ? ? ? 1_555 A A 61 N6 ? ? A C 200 A A 203 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog81 hydrog ? ? A C 83 N4 ? ? ? 1_555 A U 185 O2 ? ? A C 225 A U 327 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog82 hydrog ? ? A A 84 N6 ? ? ? 1_555 A U 185 O2 ? ? A A 226 A U 327 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog83 hydrog ? ? A A 86 N7 ? ? ? 1_555 A G 90 N2 ? ? A A 228 A G 232 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog84 hydrog ? ? A G 90 O6 ? ? ? 1_555 A C 188 N4 ? ? A G 232 A C 330 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog85 hydrog ? ? A G 91 N1 ? ? ? 1_555 A U 186 O4 ? ? A G 233 A U 328 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog86 hydrog ? ? A G 91 O6 ? ? ? 1_555 A U 186 N3 ? ? A G 233 A U 328 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog87 hydrog ? ? A G 91 O6 ? ? ? 1_555 A C 188 N4 ? ? A G 233 A C 330 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog88 hydrog ? ? A A 98 N6 ? ? ? 1_555 A U 168 O2 ? ? A A 240 A U 310 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog89 hydrog ? ? A A 101 N6 ? ? ? 1_555 A U 164 O4 ? ? A A 243 A U 306 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog90 hydrog ? ? A C 102 N3 ? ? ? 1_555 A G 163 N1 ? ? A C 244 A G 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 102 N4 ? ? ? 1_555 A G 163 O6 ? ? A C 244 A G 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 102 O2 ? ? ? 1_555 A G 163 N2 ? ? A C 244 A G 305 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 106 N1 ? ? ? 1_555 A C 160 O2 ? ? A G 248 A C 302 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog94 hydrog ? ? A G 107 N1 ? ? ? 1_555 A C 160 N3 ? ? A G 249 A C 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 107 N2 ? ? ? 1_555 A C 160 O2 ? ? A G 249 A C 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 107 O6 ? ? ? 1_555 A C 160 N4 ? ? A G 249 A C 302 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 108 N2 ? ? ? 1_555 A C 159 O2 ? ? A G 250 A C 301 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog98 hydrog ? ? A C 111 O2 ? ? ? 1_555 A G 153 N2 ? ? A C 253 A G 295 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog99 hydrog ? ? A C 112 N4 ? ? ? 1_555 A G 152 O6 ? ? A C 254 A G 294 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog100 hydrog ? ? A G 114 N2 ? ? ? 1_555 A U 151 O2 ? ? A G 256 A U 293 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog101 hydrog ? ? A A 115 N6 ? ? ? 1_555 A U 150 O2 ? ? A A 257 A U 292 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog102 hydrog ? ? A A 116 N1 ? ? ? 1_555 A G 149 N2 ? ? A A 258 A G 291 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog103 hydrog ? ? A U 117 N3 ? ? ? 1_555 A A 147 N1 ? ? A U 259 A A 289 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A U 117 O4 ? ? ? 1_555 A A 147 N6 ? ? A U 259 A A 289 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A U 118 O2 ? ? ? 1_555 A G 146 N2 ? ? A U 260 A G 288 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog106 hydrog ? ? A A 122 N1 ? ? ? 1_555 A G 143 N1 ? ? A A 264 A G 285 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog107 hydrog ? ? A U 123 O4 ? ? ? 1_555 A G 141 N1 ? ? A U 265 A G 283 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog108 hydrog ? ? A G 124 N1 ? ? ? 1_555 A A 140 N1 ? ? A G 266 A A 282 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog109 hydrog ? ? A G 124 O6 ? ? ? 1_555 A A 140 N6 ? ? A G 266 A A 282 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog110 hydrog ? ? A A 126 N6 ? ? ? 1_555 A C 139 N3 ? ? A A 268 A C 281 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog111 hydrog ? ? A U 127 O4 ? ? ? 1_555 A G 138 N1 ? ? A U 269 A G 280 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog112 hydrog ? ? A G 128 N1 ? ? ? 1_555 A C 137 N3 ? ? A G 270 A C 279 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A G 128 N2 ? ? ? 1_555 A C 137 O2 ? ? A G 270 A C 279 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A G 128 O6 ? ? ? 1_555 A C 137 N4 ? ? A G 270 A C 279 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A U 129 N3 ? ? ? 1_555 A A 136 N1 ? ? A U 271 A A 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A U 129 O4 ? ? ? 1_555 A A 136 N6 ? ? A U 271 A A 278 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A U 130 O2 ? ? ? 1_555 A G 135 N2 ? ? A U 272 A G 277 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog118 hydrog ? ? A G 173 O6 ? ? ? 1_555 A C 194 N4 ? ? A G 315 A C 336 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog119 hydrog ? ? A G 174 O6 ? ? ? 1_555 A C 193 N4 ? ? A G 316 A C 335 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog120 hydrog ? ? A G 176 O6 ? ? ? 1_555 A C 191 N4 ? ? A G 318 A C 333 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog121 hydrog ? ? A G 177 O6 ? ? ? 1_555 A C 190 N4 ? ? A G 319 A C 332 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog122 hydrog ? ? A A 178 N1 ? ? ? 1_555 A U 189 N3 ? ? A A 320 A U 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A A 178 N6 ? ? ? 1_555 A U 189 O4 ? ? A A 320 A U 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A U 179 N3 ? ? ? 1_555 A U 189 O2 ? ? A U 321 A U 331 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog125 hydrog ? ? A U 179 O4 ? ? ? 1_555 A U 189 N3 ? ? A U 321 A U 331 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 8QO2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8QO2 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8QO2 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 7.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 64145 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20 mM HEPES pH 7.5, 50 mM KCl, 50 mM NaCl' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Human coronavirus OC43' _em_entity_assembly.details 'in vitro transcription' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8QO2 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_defocus_max 2100 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/2' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIROID _em_virus_entity.virus_isolate OTHER _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped YES _em_virus_entity.empty YES _em_virus_entity.details ? # _em_vitrification.entry_id 8QO2 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8QO2 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2023-09-27 _em_admin.deposition_site PDBE _em_admin.entry_id 8QO2 _em_admin.last_update 2025-07-09 _em_admin.map_release_date 2024-03-06 _em_admin.title 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM ? 1 Hepes 1 50 mM NaCl 2 'sodium chloride' 1 50 mM KCl 3 'Potassium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 31631 _em_entity_assembly_naturalsource.organism 'Human coronavirus OC43' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 0.9 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 32630 _em_virus_natural_host.organism 'synthetic construct' _em_virus_natural_host.strain ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8QO2 'double helix' 8QO2 'a-form double helix' 8QO2 'hairpin loop' 8QO2 'bulge loop' 8QO2 'mismatched base pair' 8QO2 'internal loop' 8QO2 'triple helix' 8QO2 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 A A 222 1_555 -1.898 0.541 -0.422 25.407 -17.100 -7.598 1 A_U143:A364_A A 143 ? A 364 ? 20 1 1 A U 2 1_555 A A 221 1_555 -1.045 0.600 -1.510 9.141 -23.499 -4.393 2 A_U144:A363_A A 144 ? A 363 ? ? ? 1 A C 3 1_555 A G 220 1_555 0.069 -0.447 0.076 0.019 -18.947 -7.738 3 A_C145:G362_A A 145 ? A 362 ? 19 1 1 A U 4 1_555 A G 219 1_555 0.692 -0.178 0.493 -5.389 -11.325 -4.204 4 A_U146:G361_A A 146 ? A 361 ? 28 1 1 A G 5 1_555 A C 218 1_555 0.788 0.048 0.824 -10.675 -1.929 3.035 5 A_G147:C360_A A 147 ? A 360 ? 19 1 1 A C 6 1_555 A A 217 1_555 1.194 -0.180 1.488 -1.776 5.609 6.539 6 A_C148:A359_A A 148 ? A 359 ? ? 1 1 A U 7 1_555 A G 216 1_555 1.654 -0.709 2.353 1.921 11.701 14.261 7 A_U149:G358_A A 149 ? A 358 ? 28 1 1 A G 8 1_555 A C 214 1_555 0.818 0.334 -0.435 -5.176 -4.550 -1.074 8 A_G150:C356_A A 150 ? A 356 ? 19 1 1 A U 9 1_555 A A 213 1_555 -0.584 0.400 -0.674 0.155 -9.561 -5.927 9 A_U151:A355_A A 151 ? A 355 ? 20 1 1 A U 10 1_555 A A 212 1_555 -1.566 1.042 -0.505 -1.554 -8.681 -13.721 10 A_U152:A354_A A 152 ? A 354 ? ? ? 1 A A 12 1_555 A G 210 1_555 0.912 1.707 -0.219 0.237 -3.397 -15.617 11 A_A154:G352_A A 154 ? A 352 ? 8 1 1 A C 13 1_555 A G 209 1_555 1.334 0.721 -0.182 5.693 -6.680 -20.567 12 A_C155:G351_A A 155 ? A 351 ? ? ? 1 A G 15 1_555 A C 207 1_555 1.173 0.778 -0.941 -1.230 -9.068 -3.584 13 A_G157:C349_A A 157 ? A 349 ? ? ? 1 A C 16 1_555 A G 206 1_555 -0.103 0.571 -0.728 8.618 -5.465 2.655 14 A_C158:G348_A A 158 ? A 348 ? 19 1 1 A U 17 1_555 A A 205 1_555 -0.364 0.505 -0.594 7.051 -6.272 0.504 15 A_U159:A347_A A 159 ? A 347 ? 20 1 1 A U 18 1_555 A A 204 1_555 -0.969 0.430 -0.778 5.361 -7.350 -5.790 16 A_U160:A346_A A 160 ? A 346 ? 20 1 1 A U 19 1_555 A A 203 1_555 0.227 0.714 -0.871 3.290 -4.238 -1.904 17 A_U161:A345_A A 161 ? A 345 ? ? ? 1 A A 21 1_555 A A 202 1_555 -6.750 -4.904 0.639 -4.275 -5.290 -29.681 18 A_A163:A344_A A 163 ? A 344 ? ? 10 1 A C 23 1_555 A G 200 1_555 0.617 -0.119 0.745 1.445 -7.185 -11.576 19 A_C165:G342_A A 165 ? A 342 ? 19 1 1 A C 24 1_555 A C 199 1_555 2.180 -1.300 1.503 -1.474 -10.842 -12.279 20 A_C166:C341_A A 166 ? A 341 ? ? ? 1 A G 26 1_555 A A 195 1_555 1.114 2.050 0.909 -28.169 -27.499 -37.321 21 A_G168:A337_A A 168 ? A 337 ? 8 1 1 A G 173 1_555 A C 194 1_555 -1.512 0.292 -0.494 -16.856 -12.016 -40.540 22 A_G315:C336_A A 315 ? A 336 ? ? ? 1 A G 174 1_555 A C 193 1_555 1.685 0.636 -0.041 -10.479 2.776 -24.498 23 A_G316:C335_A A 316 ? A 335 ? ? ? 1 A G 27 1_555 A U 94 1_555 -3.156 -0.738 0.155 39.967 15.628 -3.136 24 A_G169:U236_A A 169 ? A 236 ? 28 1 1 A U 35 1_555 A A 82 1_555 -1.228 -0.135 2.374 1.957 -3.230 18.211 25 A_U177:A224_A A 177 ? A 224 ? ? ? 1 A G 33 1_555 A C 83 1_555 2.407 0.432 -0.234 -16.273 1.039 4.721 26 A_G175:C225_A A 175 ? A 225 ? ? 1 1 A U 185 1_555 A A 84 1_555 6.063 -1.554 2.233 -53.673 -20.510 -40.955 27 A_U327:A226_A A 327 ? A 226 ? ? ? 1 A A 38 1_555 A U 79 1_555 -5.241 -1.855 -0.175 -0.247 6.841 -52.840 28 A_A180:U221_A A 180 ? A 221 ? ? ? 1 A C 40 1_555 A A 78 1_555 -0.917 -0.584 2.124 7.421 5.774 18.888 29 A_C182:A220_A A 182 ? A 220 ? ? 1 1 A C 41 1_555 A G 77 1_555 -0.187 -0.602 2.458 3.007 -1.536 16.043 30 A_C183:G219_A A 183 ? A 219 ? 19 1 1 A U 42 1_555 A A 75 1_555 -0.715 1.546 -1.064 -6.495 -19.118 -43.179 31 A_U184:A217_A A 184 ? A 217 ? ? ? 1 A A 43 1_555 A G 74 1_555 1.154 2.405 -1.644 -5.825 -15.971 -81.012 32 A_A185:G216_A A 185 ? A 216 ? ? ? 1 A G 44 1_555 A C 73 1_555 -0.293 -0.528 0.426 2.006 -14.727 -9.875 33 A_G186:C215_A A 186 ? A 215 ? 19 1 1 A G 45 1_555 A U 72 1_555 -0.724 -0.102 0.289 -1.470 -13.655 2.889 34 A_G187:U214_A A 187 ? A 214 ? 28 1 1 A C 46 1_555 A G 71 1_555 -1.309 0.086 0.759 -3.963 -16.227 -1.852 35 A_C188:G213_A A 188 ? A 213 ? 19 1 1 A A 47 1_555 A A 69 1_555 -1.527 2.547 -0.230 -14.170 -17.762 -52.655 36 A_A189:A211_A A 189 ? A 211 ? ? ? 1 A G 48 1_555 A C 67 1_555 0.377 -0.956 1.673 4.527 -33.505 -42.892 37 A_G190:C209_A A 190 ? A 209 ? ? 1 1 A U 49 1_555 A A 66 1_555 0.365 0.338 0.072 -0.523 -32.632 -41.357 38 A_U191:A208_A A 191 ? A 208 ? 20 1 1 A C 52 1_555 A G 63 1_555 -0.855 0.172 0.873 17.464 -13.621 -9.929 39 A_C194:G205_A A 194 ? A 205 ? 19 1 1 A C 53 1_555 A G 62 1_555 -0.810 -0.112 0.488 9.358 -21.617 -14.217 40 A_C195:G204_A A 195 ? A 204 ? 19 1 1 A C 58 1_555 A A 61 1_555 0.571 -2.557 -0.476 -33.195 -47.605 -126.770 41 A_C200:A203_A A 200 ? A 203 ? ? 2 1 A G 91 1_555 A U 186 1_555 -0.092 1.588 0.401 8.124 33.725 -179.646 42 A_G233:U328_A A 233 ? A 328 ? 27 2 1 A C 188 1_555 A G 90 1_555 0.035 2.772 2.408 -49.248 -38.901 -89.248 43 A_C330:G232_A A 330 ? A 232 ? ? ? 1 A A 98 1_555 A U 168 1_555 -3.831 -1.406 1.630 -15.614 2.969 -1.119 44 A_A240:U310_A A 240 ? A 310 ? ? ? 1 A A 101 1_555 A U 164 1_555 2.143 1.207 0.517 3.849 -4.376 -31.674 45 A_A243:U306_A A 243 ? A 306 ? ? ? 1 A C 102 1_555 A G 163 1_555 -0.145 -0.525 -0.163 7.323 22.825 -3.686 46 A_C244:G305_A A 244 ? A 305 ? 19 1 1 A G 107 1_555 A C 160 1_555 0.169 -0.647 1.000 -19.938 43.170 24.132 47 A_G249:C302_A A 249 ? A 302 ? 19 1 1 A G 108 1_555 A C 159 1_555 -0.957 1.169 1.975 0.068 5.524 52.228 48 A_G250:C301_A A 250 ? A 301 ? ? 1 1 A C 111 1_555 A G 153 1_555 -0.095 2.186 0.533 6.472 -16.180 25.992 49 A_C253:G295_A A 253 ? A 295 ? ? ? 1 A C 112 1_555 A G 152 1_555 -0.919 0.953 -0.221 3.141 -15.610 -6.061 50 A_C254:G294_A A 254 ? A 294 ? ? ? 1 A G 114 1_555 A U 151 1_555 1.927 0.112 2.394 0.164 2.348 20.165 51 A_G256:U293_A A 256 ? A 293 ? ? ? 1 A A 115 1_555 A U 150 1_555 -4.703 -0.053 1.472 2.470 13.193 12.433 52 A_A257:U292_A A 257 ? A 292 ? ? ? 1 A A 116 1_555 A G 149 1_555 -0.974 2.759 1.187 12.266 27.537 42.079 53 A_A258:G291_A A 258 ? A 291 ? ? ? 1 A U 117 1_555 A A 147 1_555 0.878 -0.444 1.146 -6.620 -16.471 -9.823 54 A_U259:A289_A A 259 ? A 289 ? 20 1 1 A U 118 1_555 A G 146 1_555 1.193 0.060 1.769 -12.463 -11.842 -1.584 55 A_U260:G288_A A 260 ? A 288 ? ? 1 1 A A 122 1_555 A G 143 1_555 1.120 1.829 0.557 26.275 -35.741 -0.897 56 A_A264:G285_A A 264 ? A 285 ? ? ? 1 A U 123 1_555 A G 141 1_555 -4.011 0.940 -0.339 -5.707 -0.047 -49.603 57 A_U265:G283_A A 265 ? A 283 ? ? 1 1 A G 124 1_555 A A 140 1_555 0.131 2.155 -0.412 6.657 8.622 -30.951 58 A_G266:A282_A A 266 ? A 282 ? 8 1 1 A A 126 1_555 A C 139 1_555 -2.502 0.379 0.382 3.392 -5.686 -18.200 59 A_A268:C281_A A 268 ? A 281 ? ? ? 1 A U 127 1_555 A G 138 1_555 -0.973 -0.237 1.161 11.553 -15.038 -15.252 60 A_U269:G280_A A 269 ? A 280 ? ? 1 1 A G 128 1_555 A C 137 1_555 -0.664 -0.015 0.265 0.077 -20.557 -13.920 61 A_G270:C279_A A 270 ? A 279 ? 19 1 1 A U 129 1_555 A A 136 1_555 -0.011 0.644 0.436 0.800 -10.403 -0.269 62 A_U271:A278_A A 271 ? A 278 ? 20 1 1 A U 130 1_555 A G 135 1_555 1.523 1.481 1.403 -0.066 10.702 30.890 63 A_U272:G277_A A 272 ? A 277 ? ? ? 1 A G 176 1_555 A C 191 1_555 -0.388 0.814 -0.172 7.249 -3.489 -20.106 64 A_G318:C333_A A 318 ? A 333 ? ? ? 1 A G 177 1_555 A C 190 1_555 -1.530 0.387 -0.568 15.037 -3.753 -24.323 65 A_G319:C332_A A 319 ? A 332 ? ? ? 1 A A 178 1_555 A U 189 1_555 -0.772 -0.074 -1.111 18.753 -14.402 -21.175 66 A_A320:U331_A A 320 ? A 331 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 A A 222 1_555 A U 2 1_555 A A 221 1_555 0.019 -1.372 3.756 2.143 12.372 37.537 -3.613 0.246 3.162 18.601 -3.222 39.510 1 AA_U143U144:A363A364_AA A 143 ? A 364 ? A 144 ? A 363 ? 1 A U 2 1_555 A A 221 1_555 A C 3 1_555 A G 220 1_555 0.571 -1.872 4.214 0.060 10.970 33.317 -5.094 -0.938 3.445 18.520 -0.101 35.028 2 AA_U144C145:G362A363_AA A 144 ? A 363 ? A 145 ? A 362 ? 1 A C 3 1_555 A G 220 1_555 A U 4 1_555 A G 219 1_555 0.402 -1.183 3.463 0.057 9.965 36.605 -3.117 -0.612 3.049 15.516 -0.088 37.892 3 AA_C145U146:G361G362_AA A 145 ? A 362 ? A 146 ? A 361 ? 1 A U 4 1_555 A G 219 1_555 A G 5 1_555 A C 218 1_555 0.523 -1.264 3.537 -0.624 9.572 32.582 -3.744 -0.999 3.045 16.617 1.083 33.928 4 AA_U146G147:C360G361_AA A 146 ? A 361 ? A 147 ? A 360 ? 1 A G 5 1_555 A C 218 1_555 A C 6 1_555 A A 217 1_555 0.244 -1.415 3.313 -2.282 7.188 31.613 -3.745 -0.822 2.905 12.965 4.115 32.478 5 AA_G147C148:A359C360_AA A 147 ? A 360 ? A 148 ? A 359 ? 1 A C 6 1_555 A A 217 1_555 A U 7 1_555 A G 216 1_555 0.659 -1.304 3.395 -2.619 12.018 31.834 -4.067 -1.526 2.681 20.959 4.567 34.070 6 AA_C148U149:G358A359_AA A 148 ? A 359 ? A 149 ? A 358 ? 1 A U 7 1_555 A G 216 1_555 A G 8 1_555 A C 214 1_555 1.070 -2.299 5.259 -0.637 21.372 45.191 -5.037 -1.341 3.855 26.155 0.779 49.753 7 AA_U149G150:C356G358_AA A 149 ? A 358 ? A 150 ? A 356 ? 1 A G 8 1_555 A C 214 1_555 A U 9 1_555 A A 213 1_555 -0.224 -1.615 3.182 1.722 6.973 27.423 -4.768 0.820 2.679 14.397 -3.556 28.330 8 AA_G150U151:A355C356_AA A 150 ? A 356 ? A 151 ? A 355 ? 1 A U 9 1_555 A A 213 1_555 A U 10 1_555 A A 212 1_555 -0.411 -1.489 3.399 -0.361 8.456 29.053 -4.530 0.716 2.867 16.421 0.701 30.236 9 AA_U151U152:A354A355_AA A 151 ? A 355 ? A 152 ? A 354 ? 1 A U 10 1_555 A A 212 1_555 A A 12 1_555 A G 210 1_555 0.122 -2.789 6.487 0.081 17.022 68.643 -3.553 -0.101 5.749 14.864 -0.071 70.470 10 AA_U152A154:G352A354_AA A 152 ? A 354 ? A 154 ? A 352 ? 1 A A 12 1_555 A G 210 1_555 A C 13 1_555 A G 209 1_555 -0.418 -1.443 3.242 1.073 7.419 32.766 -3.641 0.890 2.842 12.941 -1.872 33.589 11 AA_A154C155:G351G352_AA A 154 ? A 352 ? A 155 ? A 351 ? 1 A G 15 1_555 A C 207 1_555 A C 16 1_555 A G 206 1_555 0.431 -1.553 3.041 -1.279 3.709 26.744 -4.166 -1.213 2.780 7.964 2.746 27.025 12 AA_G157C158:G348C349_AA A 157 ? A 349 ? A 158 ? A 348 ? 1 A C 16 1_555 A G 206 1_555 A U 17 1_555 A A 205 1_555 -0.047 -1.484 3.417 -0.070 7.493 29.484 -4.318 0.075 2.958 14.430 0.134 30.401 13 AA_C158U159:A347G348_AA A 158 ? A 348 ? A 159 ? A 347 ? 1 A U 17 1_555 A A 205 1_555 A U 18 1_555 A A 204 1_555 -0.439 -1.487 3.343 0.522 9.621 29.675 -4.514 0.913 2.731 18.191 -0.987 31.167 14 AA_U159U160:A346A347_AA A 159 ? A 347 ? A 160 ? A 346 ? 1 A U 18 1_555 A A 204 1_555 A U 19 1_555 A A 203 1_555 0.327 -1.332 3.404 0.580 12.960 35.185 -3.736 -0.436 2.765 20.594 -0.922 37.429 15 AA_U160U161:A345A346_AA A 160 ? A 346 ? A 161 ? A 345 ? 1 A U 19 1_555 A A 203 1_555 A A 21 1_555 A A 202 1_555 -1.763 -4.727 4.315 -4.123 6.746 10.520 -27.955 3.224 1.588 31.578 19.301 13.153 16 AA_U161A163:A344A345_AA A 161 ? A 345 ? A 163 ? A 344 ? 1 A C 23 1_555 A G 200 1_555 A C 24 1_555 A C 199 1_555 0.002 -1.158 3.625 -0.080 13.132 40.541 -3.004 -0.011 3.121 18.378 0.111 42.530 17 AA_C165C166:C341G342_AA A 165 ? A 342 ? A 166 ? A 341 ? 1 A G 26 1_555 A A 195 1_555 A G 173 1_555 A C 194 1_555 -1.575 -3.165 2.855 12.079 18.474 40.218 -5.074 2.681 0.903 24.746 -16.179 45.656 18 AA_G168G315:C336A337_AA A 168 ? A 337 ? A 315 ? A 336 ? 1 A G 173 1_555 A C 194 1_555 A G 174 1_555 A C 193 1_555 1.235 -1.442 3.429 -1.286 14.408 43.250 -3.108 -1.707 2.800 18.926 1.690 45.495 19 AA_G315G316:C335C336_AA A 315 ? A 336 ? A 316 ? A 335 ? 1 A U 35 1_555 A A 82 1_555 A G 33 1_555 A C 83 1_555 1.903 3.394 -5.209 -2.209 -5.351 -24.452 -10.103 5.326 -4.196 12.413 -5.125 -25.118 20 AA_U177G175:C225A224_AA A 177 ? A 224 ? A 175 ? A 225 ? 1 A G 33 1_555 A C 83 1_555 A U 185 1_555 A A 84 1_555 1.468 -0.393 -1.324 -22.299 -7.039 -60.817 0.265 1.693 -0.833 6.694 -21.206 -64.754 21 AA_G175U327:A226C225_AA A 175 ? A 225 ? A 327 ? A 226 ? 1 A C 40 1_555 A A 78 1_555 A C 41 1_555 A G 77 1_555 -0.072 -1.253 3.593 0.375 11.169 34.691 -3.627 0.169 3.056 18.158 -0.609 36.394 22 AA_C182C183:G219A220_AA A 182 ? A 220 ? A 183 ? A 219 ? 1 A C 41 1_555 A G 77 1_555 A U 42 1_555 A A 75 1_555 -1.371 -2.280 5.209 -0.018 17.251 51.492 -4.093 1.506 4.298 19.250 0.020 54.118 23 AA_C183U184:A217G219_AA A 183 ? A 219 ? A 184 ? A 217 ? 1 A U 42 1_555 A A 75 1_555 A A 43 1_555 A G 74 1_555 -1.947 -2.591 4.256 4.825 18.805 39.818 -5.405 3.093 2.595 25.835 -6.629 44.125 24 AA_U184A185:G216A217_AA A 184 ? A 217 ? A 185 ? A 216 ? 1 A A 43 1_555 A G 74 1_555 A G 44 1_555 A C 73 1_555 4.994 -0.981 2.871 -0.929 14.375 32.290 -3.321 -8.350 2.118 24.390 1.577 35.279 25 AA_A185G186:C215G216_AA A 185 ? A 216 ? A 186 ? A 215 ? 1 A G 44 1_555 A C 73 1_555 A G 45 1_555 A U 72 1_555 0.861 -1.380 3.437 -0.104 5.424 33.198 -3.287 -1.505 3.176 9.415 0.180 33.626 26 AA_G186G187:U214C215_AA A 186 ? A 215 ? A 187 ? A 214 ? 1 A G 45 1_555 A U 72 1_555 A C 46 1_555 A G 71 1_555 -0.391 -1.455 3.535 -2.034 4.869 31.419 -3.585 0.323 3.296 8.912 3.723 31.848 27 AA_G187C188:G213U214_AA A 187 ? A 214 ? A 188 ? A 213 ? 1 A C 46 1_555 A G 71 1_555 A A 47 1_555 A A 69 1_555 0.035 -3.047 6.030 -6.384 18.997 47.173 -5.766 -0.790 4.528 22.585 7.590 51.029 28 AA_C188A189:A211G213_AA A 188 ? A 213 ? A 189 ? A 211 ? 1 A A 47 1_555 A A 69 1_555 A G 48 1_555 A C 67 1_555 3.447 -0.841 3.273 -14.113 25.906 64.294 -1.538 -3.441 2.137 23.118 12.595 70.074 29 AA_A189G190:C209A211_AA A 189 ? A 211 ? A 190 ? A 209 ? 1 A G 48 1_555 A C 67 1_555 A U 49 1_555 A A 66 1_555 -0.344 -2.259 3.893 -0.154 1.018 38.155 -3.606 0.503 3.835 1.558 0.236 38.168 30 AA_G190U191:A208C209_AA A 190 ? A 209 ? A 191 ? A 208 ? 1 A C 52 1_555 A G 63 1_555 A C 53 1_555 A G 62 1_555 -0.423 -1.304 3.503 0.336 11.597 36.449 -3.476 0.689 2.962 17.988 -0.520 38.191 31 AA_C194C195:G204G205_AA A 194 ? A 205 ? A 195 ? A 204 ? 1 A G 91 1_555 A U 186 1_555 A C 188 1_555 A G 90 1_555 1.981 2.253 -2.676 -39.011 17.108 -167.909 -1.111 1.042 -2.640 -8.598 -19.605 -168.738 32 AA_G233C330:G232U328_AA A 233 ? A 328 ? A 330 ? A 232 ? 1 A A 101 1_555 A U 164 1_555 A C 102 1_555 A G 163 1_555 2.452 -0.745 3.398 6.095 -5.386 24.958 0.034 -3.508 3.947 -12.061 -13.649 26.230 33 AA_A243C244:G305U306_AA A 243 ? A 306 ? A 244 ? A 305 ? 1 A G 107 1_555 A C 160 1_555 A G 108 1_555 A C 159 1_555 1.271 -2.182 2.521 -4.865 24.492 14.564 -6.343 -2.940 -0.773 59.059 11.730 28.849 34 AA_G249G250:C301C302_AA A 249 ? A 302 ? A 250 ? A 301 ? 1 A C 111 1_555 A G 153 1_555 A C 112 1_555 A G 152 1_555 -2.345 -1.415 3.182 -1.132 8.970 28.217 -4.520 4.368 2.704 17.830 2.249 29.602 35 AA_C253C254:G294G295_AA A 253 ? A 295 ? A 254 ? A 294 ? 1 A C 112 1_555 A G 152 1_555 A G 114 1_555 A U 151 1_555 -0.271 -2.584 5.753 2.668 24.178 43.610 -5.897 0.634 3.880 29.941 -3.304 49.644 36 AA_C254G256:U293G294_AA A 254 ? A 294 ? A 256 ? A 293 ? 1 A G 114 1_555 A U 151 1_555 A A 115 1_555 A U 150 1_555 -0.834 -2.329 3.121 -0.962 15.648 8.370 -12.561 2.394 -0.528 61.956 3.810 17.759 37 AA_G256A257:U292U293_AA A 256 ? A 293 ? A 257 ? A 292 ? 1 A A 115 1_555 A U 150 1_555 A A 116 1_555 A G 149 1_555 1.383 -1.125 3.064 -9.515 12.110 37.136 -2.801 -2.928 2.201 18.091 14.215 40.099 38 AA_A257A258:G291U292_AA A 257 ? A 292 ? A 258 ? A 291 ? 1 A A 116 1_555 A G 149 1_555 A U 117 1_555 A A 147 1_555 0.675 -3.656 6.184 -5.154 10.011 37.820 -7.487 -2.064 4.965 15.042 7.744 39.402 39 AA_A258U259:A289G291_AA A 258 ? A 291 ? A 259 ? A 289 ? 1 A U 117 1_555 A A 147 1_555 A U 118 1_555 A G 146 1_555 0.919 -1.245 3.408 1.991 11.067 36.740 -3.273 -1.150 2.968 17.073 -3.072 38.366 40 AA_U259U260:G288A289_AA A 259 ? A 289 ? A 260 ? A 288 ? 1 A A 122 1_555 A G 143 1_555 A U 123 1_555 A G 141 1_555 -0.951 -3.452 5.934 -18.455 31.582 39.511 -7.007 -0.788 2.823 38.298 22.379 53.341 41 AA_A264U265:G283G285_AA A 264 ? A 285 ? A 265 ? A 283 ? 1 A U 123 1_555 A G 141 1_555 A G 124 1_555 A A 140 1_555 1.479 -1.660 3.340 -0.608 11.981 43.046 -3.236 -2.002 2.785 15.961 0.810 44.610 42 AA_U265G266:A282G283_AA A 265 ? A 283 ? A 266 ? A 282 ? 1 A G 124 1_555 A A 140 1_555 A A 126 1_555 A C 139 1_555 -1.242 -2.748 5.650 9.514 10.858 36.251 -6.192 3.677 4.241 16.660 -14.599 38.930 43 AA_G266A268:C281A282_AA A 266 ? A 282 ? A 268 ? A 281 ? 1 A A 126 1_555 A C 139 1_555 A U 127 1_555 A G 138 1_555 1.073 -2.021 3.797 1.682 3.238 33.156 -4.134 -1.551 3.637 5.652 -2.936 33.350 44 AA_A268U269:G280C281_AA A 268 ? A 281 ? A 269 ? A 280 ? 1 A U 127 1_555 A G 138 1_555 A G 128 1_555 A C 137 1_555 -0.047 -1.265 3.647 2.670 11.129 37.427 -3.314 0.412 3.149 16.867 -4.047 39.077 45 AA_U269G270:C279G280_AA A 269 ? A 280 ? A 270 ? A 279 ? 1 A G 128 1_555 A C 137 1_555 A U 129 1_555 A A 136 1_555 0.998 -1.306 3.328 -0.537 6.111 35.360 -2.980 -1.696 3.053 9.967 0.875 35.872 46 AA_G270U271:A278C279_AA A 270 ? A 279 ? A 271 ? A 278 ? 1 A U 129 1_555 A A 136 1_555 A U 130 1_555 A G 135 1_555 2.083 -1.334 3.637 -5.769 6.444 31.688 -3.488 -4.695 2.903 11.535 10.326 32.818 47 AA_U271U272:G277A278_AA A 271 ? A 278 ? A 272 ? A 277 ? 1 A G 176 1_555 A C 191 1_555 A G 177 1_555 A C 190 1_555 -0.787 -1.285 3.138 -2.436 11.814 28.713 -4.424 1.051 2.485 22.603 4.660 31.095 48 AA_G318G319:C332C333_AA A 318 ? A 333 ? A 319 ? A 332 ? 1 A G 177 1_555 A C 190 1_555 A A 178 1_555 A U 189 1_555 -0.199 -1.277 3.207 -2.416 11.944 36.238 -3.347 0.023 2.677 18.568 3.757 38.167 49 AA_G319A320:U331C332_AA A 319 ? A 332 ? A 320 ? A 331 ? # _pdbx_audit_support.funding_organization 'Polish National Science Centre' _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8QO2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #