data_8QO4 # _entry.id 8QO4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8QO4 pdb_00008qo4 10.2210/pdb8qo4/pdb WWPDB D_1292133612 ? ? EMDB EMD-18522 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-03-06 ? 2 'EM metadata' 1 0 2024-03-06 ? 3 FSC 1 0 2024-03-06 ? 4 'Half map' 1 0 2024-03-06 1 5 'Half map' 1 0 2024-03-06 2 6 Image 1 0 2024-03-06 ? 7 'Primary map' 1 0 2024-03-06 ? 8 'Structure model' 1 1 2024-03-13 ? 9 FSC 1 0 2024-03-06 ? 10 'Half map' 1 0 2024-03-06 1 11 'Half map' 1 0 2024-03-06 2 12 Image 1 0 2024-03-06 ? 13 'Primary map' 1 0 2024-03-06 ? 14 'Structure model' 1 2 2024-04-24 ? 15 FSC 1 0 2024-03-06 ? 16 'Half map' 1 0 2024-03-06 1 17 'Half map' 1 0 2024-03-06 2 18 Image 1 0 2024-03-06 ? 19 'Primary map' 1 0 2024-03-06 ? 20 'Structure model' 1 3 2025-07-02 ? 21 'EM metadata' 1 1 2025-07-02 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? 8 9 FSC repository 'Initial release' ? ? 9 10 'Half map' repository 'Initial release' ? ? 10 11 'Half map' repository 'Initial release' ? ? 11 12 Image repository 'Initial release' ? ? 12 13 'Primary map' repository 'Initial release' ? ? 13 15 FSC repository 'Initial release' ? ? 14 16 'Half map' repository 'Initial release' ? ? 15 17 'Half map' repository 'Initial release' ? ? 16 18 Image repository 'Initial release' ? ? 17 19 'Primary map' repository 'Initial release' ? ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 8 'Structure model' 'Database references' 2 14 'Structure model' 'Database references' 3 20 'Structure model' 'Data collection' 4 20 'Structure model' 'Structure summary' 5 21 'EM metadata' 'Data processing' 6 21 'EM metadata' 'Experimental summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 8 'Structure model' citation 2 8 'Structure model' citation_author 3 14 'Structure model' citation 4 20 'Structure model' em_admin 5 20 'Structure model' em_software 6 20 'Structure model' pdbx_entry_details 7 21 'EM metadata' em_admin 8 21 'EM metadata' em_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 8 'Structure model' '_citation.pdbx_database_id_PubMed' 2 8 'Structure model' '_citation.title' 3 14 'Structure model' '_citation.journal_volume' 4 14 'Structure model' '_citation.page_first' 5 14 'Structure model' '_citation.page_last' 6 20 'Structure model' '_em_admin.last_update' 7 20 'Structure model' '_em_software.name' 8 21 'EM metadata' '_em_admin.last_update' 9 21 'EM metadata' '_em_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8QO4 _pdbx_database_status.recvd_initial_deposition_date 2023-09-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' _pdbx_database_related.db_id EMD-18522 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email janusz@iimcb.gov.pl _pdbx_contact_author.name_first Janusz _pdbx_contact_author.name_last Bujnicki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-6633-165X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Moura, T.R.' 1 0000-0001-5492-8419 'Purta, E.' 2 0000-0003-0960-548X 'Bernat, A.' 3 0000-0002-5555-9464 'Baulin, E.' 4 0000-0003-4694-9783 'Mukherjee, S.' 5 0000-0002-4361-0103 'Bujnicki, J.M.' 6 0000-0002-6633-165X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 3419 _citation.page_last 3432 _citation.title ;Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae144 _citation.pdbx_database_id_PubMed 38426934 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'de Moura, T.R.' 1 ? primary 'Purta, E.' 2 ? primary 'Bernat, A.' 3 ? primary 'Martin-Cuevas, E.M.' 4 ? primary 'Kurkowska, M.' 5 ? primary 'Baulin, E.F.' 6 ? primary 'Mukherjee, S.' 7 ? primary 'Nowak, J.' 8 ? primary 'Biela, A.P.' 9 ? primary 'Rawski, M.' 10 ? primary 'Glatt, S.' 11 ? primary 'Moreno-Herrero, F.' 12 ? primary 'Bujnicki, J.M.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description MERS-CoV-SL5 _entity.formula_weight 50119.512 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;UUUUUCAGUUAGAGCGUCGUGUCUCUUGUACGUCUCGGUCACAAUACACGGUUUCGUCCGGUGCGUGGCAAUUCGGGGCA CAUCAUGUCUUUCGUGGCUGGUGUGACCGCGCAAGGUGCGCGCGGUACGUAUCGAGCAGCGCUCAACUCUGAAAAA ; _entity_poly.pdbx_seq_one_letter_code_can ;UUUUUCAGUUAGAGCGUCGUGUCUCUUGUACGUCUCGGUCACAAUACACGGUUUCGUCCGGUGCGUGGCAAUUCGGGGCA CAUCAUGUCUUUCGUGGCUGGUGUGACCGCGCAAGGUGCGCGCGGUACGUAUCGAGCAGCGCUCAACUCUGAAAAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 U n 1 4 U n 1 5 U n 1 6 C n 1 7 A n 1 8 G n 1 9 U n 1 10 U n 1 11 A n 1 12 G n 1 13 A n 1 14 G n 1 15 C n 1 16 G n 1 17 U n 1 18 C n 1 19 G n 1 20 U n 1 21 G n 1 22 U n 1 23 C n 1 24 U n 1 25 C n 1 26 U n 1 27 U n 1 28 G n 1 29 U n 1 30 A n 1 31 C n 1 32 G n 1 33 U n 1 34 C n 1 35 U n 1 36 C n 1 37 G n 1 38 G n 1 39 U n 1 40 C n 1 41 A n 1 42 C n 1 43 A n 1 44 A n 1 45 U n 1 46 A n 1 47 C n 1 48 A n 1 49 C n 1 50 G n 1 51 G n 1 52 U n 1 53 U n 1 54 U n 1 55 C n 1 56 G n 1 57 U n 1 58 C n 1 59 C n 1 60 G n 1 61 G n 1 62 U n 1 63 G n 1 64 C n 1 65 G n 1 66 U n 1 67 G n 1 68 G n 1 69 C n 1 70 A n 1 71 A n 1 72 U n 1 73 U n 1 74 C n 1 75 G n 1 76 G n 1 77 G n 1 78 G n 1 79 C n 1 80 A n 1 81 C n 1 82 A n 1 83 U n 1 84 C n 1 85 A n 1 86 U n 1 87 G n 1 88 U n 1 89 C n 1 90 U n 1 91 U n 1 92 U n 1 93 C n 1 94 G n 1 95 U n 1 96 G n 1 97 G n 1 98 C n 1 99 U n 1 100 G n 1 101 G n 1 102 U n 1 103 G n 1 104 U n 1 105 G n 1 106 A n 1 107 C n 1 108 C n 1 109 G n 1 110 C n 1 111 G n 1 112 C n 1 113 A n 1 114 A n 1 115 G n 1 116 G n 1 117 U n 1 118 G n 1 119 C n 1 120 G n 1 121 C n 1 122 G n 1 123 C n 1 124 G n 1 125 G n 1 126 U n 1 127 A n 1 128 C n 1 129 G n 1 130 U n 1 131 A n 1 132 U n 1 133 C n 1 134 G n 1 135 A n 1 136 G n 1 137 C n 1 138 A n 1 139 G n 1 140 C n 1 141 G n 1 142 C n 1 143 U n 1 144 C n 1 145 A n 1 146 A n 1 147 C n 1 148 U n 1 149 C n 1 150 U n 1 151 G n 1 152 A n 1 153 A n 1 154 A n 1 155 A n 1 156 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 156 _pdbx_entity_src_syn.organism_scientific 'Middle East respiratory syndrome-related coronavirus' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1335626 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 195 195 U U A . n A 1 2 U 2 196 196 U U A . n A 1 3 U 3 197 197 U U A . n A 1 4 U 4 198 198 U U A . n A 1 5 U 5 199 199 U U A . n A 1 6 C 6 200 200 C C A . n A 1 7 A 7 201 201 A A A . n A 1 8 G 8 202 202 G G A . n A 1 9 U 9 203 203 U U A . n A 1 10 U 10 204 204 U U A . n A 1 11 A 11 205 205 A A A . n A 1 12 G 12 206 206 G G A . n A 1 13 A 13 207 207 A A A . n A 1 14 G 14 208 208 G G A . n A 1 15 C 15 209 209 C C A . n A 1 16 G 16 210 210 G G A . n A 1 17 U 17 211 211 U U A . n A 1 18 C 18 212 212 C C A . n A 1 19 G 19 213 213 G G A . n A 1 20 U 20 214 214 U U A . n A 1 21 G 21 215 215 G G A . n A 1 22 U 22 216 216 U U A . n A 1 23 C 23 217 217 C C A . n A 1 24 U 24 218 218 U U A . n A 1 25 C 25 219 219 C C A . n A 1 26 U 26 220 220 U U A . n A 1 27 U 27 221 221 U U A . n A 1 28 G 28 222 222 G G A . n A 1 29 U 29 223 223 U U A . n A 1 30 A 30 224 224 A A A . n A 1 31 C 31 225 225 C C A . n A 1 32 G 32 226 226 G G A . n A 1 33 U 33 227 227 U U A . n A 1 34 C 34 228 228 C C A . n A 1 35 U 35 229 229 U U A . n A 1 36 C 36 230 230 C C A . n A 1 37 G 37 231 231 G G A . n A 1 38 G 38 232 232 G G A . n A 1 39 U 39 233 233 U U A . n A 1 40 C 40 234 234 C C A . n A 1 41 A 41 235 235 A A A . n A 1 42 C 42 236 236 C C A . n A 1 43 A 43 237 237 A A A . n A 1 44 A 44 238 238 A A A . n A 1 45 U 45 239 239 U U A . n A 1 46 A 46 240 240 A A A . n A 1 47 C 47 241 241 C C A . n A 1 48 A 48 242 242 A A A . n A 1 49 C 49 243 243 C C A . n A 1 50 G 50 244 244 G G A . n A 1 51 G 51 245 245 G G A . n A 1 52 U 52 246 246 U U A . n A 1 53 U 53 247 247 U U A . n A 1 54 U 54 248 248 U U A . n A 1 55 C 55 249 249 C C A . n A 1 56 G 56 250 250 G G A . n A 1 57 U 57 251 251 U U A . n A 1 58 C 58 252 252 C C A . n A 1 59 C 59 253 253 C C A . n A 1 60 G 60 254 254 G G A . n A 1 61 G 61 255 255 G G A . n A 1 62 U 62 256 256 U U A . n A 1 63 G 63 257 257 G G A . n A 1 64 C 64 258 258 C C A . n A 1 65 G 65 259 259 G G A . n A 1 66 U 66 260 260 U U A . n A 1 67 G 67 261 261 G G A . n A 1 68 G 68 262 262 G G A . n A 1 69 C 69 263 263 C C A . n A 1 70 A 70 264 264 A A A . n A 1 71 A 71 265 265 A A A . n A 1 72 U 72 266 266 U U A . n A 1 73 U 73 267 267 U U A . n A 1 74 C 74 268 268 C C A . n A 1 75 G 75 269 269 G G A . n A 1 76 G 76 270 270 G G A . n A 1 77 G 77 271 271 G G A . n A 1 78 G 78 272 272 G G A . n A 1 79 C 79 273 273 C C A . n A 1 80 A 80 274 274 A A A . n A 1 81 C 81 275 275 C C A . n A 1 82 A 82 276 276 A A A . n A 1 83 U 83 277 277 U U A . n A 1 84 C 84 278 278 C C A . n A 1 85 A 85 279 279 A A A . n A 1 86 U 86 280 280 U U A . n A 1 87 G 87 281 281 G G A . n A 1 88 U 88 282 282 U U A . n A 1 89 C 89 283 283 C C A . n A 1 90 U 90 284 284 U U A . n A 1 91 U 91 285 285 U U A . n A 1 92 U 92 286 286 U U A . n A 1 93 C 93 287 287 C C A . n A 1 94 G 94 288 288 G G A . n A 1 95 U 95 289 289 U U A . n A 1 96 G 96 290 290 G G A . n A 1 97 G 97 291 291 G G A . n A 1 98 C 98 292 292 C C A . n A 1 99 U 99 293 293 U U A . n A 1 100 G 100 294 294 G G A . n A 1 101 G 101 295 295 G G A . n A 1 102 U 102 296 296 U U A . n A 1 103 G 103 297 297 G G A . n A 1 104 U 104 298 298 U U A . n A 1 105 G 105 299 299 G G A . n A 1 106 A 106 300 300 A A A . n A 1 107 C 107 301 301 C C A . n A 1 108 C 108 302 302 C C A . n A 1 109 G 109 303 303 G G A . n A 1 110 C 110 304 304 C C A . n A 1 111 G 111 305 305 G G A . n A 1 112 C 112 306 306 C C A . n A 1 113 A 113 307 307 A A A . n A 1 114 A 114 308 308 A A A . n A 1 115 G 115 309 309 G G A . n A 1 116 G 116 310 310 G G A . n A 1 117 U 117 311 311 U U A . n A 1 118 G 118 312 312 G G A . n A 1 119 C 119 313 313 C C A . n A 1 120 G 120 314 314 G G A . n A 1 121 C 121 315 315 C C A . n A 1 122 G 122 316 316 G G A . n A 1 123 C 123 317 317 C C A . n A 1 124 G 124 318 318 G G A . n A 1 125 G 125 319 319 G G A . n A 1 126 U 126 320 320 U U A . n A 1 127 A 127 321 321 A A A . n A 1 128 C 128 322 322 C C A . n A 1 129 G 129 323 323 G G A . n A 1 130 U 130 324 324 U U A . n A 1 131 A 131 325 325 A A A . n A 1 132 U 132 326 326 U U A . n A 1 133 C 133 327 327 C C A . n A 1 134 G 134 328 328 G G A . n A 1 135 A 135 329 329 A A A . n A 1 136 G 136 330 330 G G A . n A 1 137 C 137 331 331 C C A . n A 1 138 A 138 332 332 A A A . n A 1 139 G 139 333 333 G G A . n A 1 140 C 140 334 334 C C A . n A 1 141 G 141 335 335 G G A . n A 1 142 C 142 336 336 C C A . n A 1 143 U 143 337 337 U U A . n A 1 144 C 144 338 338 C C A . n A 1 145 A 145 339 339 A A A . n A 1 146 A 146 340 340 A A A . n A 1 147 C 147 341 341 C C A . n A 1 148 U 148 342 342 U U A . n A 1 149 C 149 343 343 C C A . n A 1 150 U 150 344 344 U U A . n A 1 151 G 151 345 345 G G A . n A 1 152 A 152 346 346 A A A . n A 1 153 A 153 347 347 A A A . n A 1 154 A 154 348 348 A A A . n A 1 155 A 155 349 349 A A A . n A 1 156 A 156 350 350 A A A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8QO4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8QO4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8QO4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8QO4 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3700 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.507 ? 5765 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 17.919 ? 1869 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.023 ? 780 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 156 ? f_plane_restr ? ? # _struct.entry_id 8QO4 _struct.title 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8QO4 _struct_keywords.text 'RNA structure, 5-proximal region, Coronavirus, Cryo-EM, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NC_019843.3 _struct_ref.pdbx_db_accession NC_019843.3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;UUUUUCAGUUAGAGCGUCGUGUCUCUUGUACGUCUCGGUCACAAUACACGGUUUCGUCCGGUGCGUGGCAAUUCGGGGCA CAUCAUGUCUUUCGUGGCUGGUGUGACCGCGCAAGGUGCGCGCGGUACGUAUCGAGCAGCGCUCAACUCUGAAAAA ; _struct_ref.pdbx_align_begin 195 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8QO4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 156 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession NC_019843.3 _struct_ref_seq.db_align_beg 195 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 350 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 195 _struct_ref_seq.pdbx_auth_seq_align_end 350 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A U 1 N3 ? ? ? 1_555 A A 156 N1 ? ? A U 195 A A 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A U 1 O4 ? ? ? 1_555 A A 156 N6 ? ? A U 195 A A 350 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 155 N6 ? ? A U 196 A A 349 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog4 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 154 N1 ? ? A U 197 A A 348 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 154 N6 ? ? A U 197 A A 348 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 153 N1 ? ? A U 198 A A 347 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 153 N6 ? ? A U 198 A A 347 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 152 N1 ? ? A U 199 A A 346 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 152 N6 ? ? A U 199 A A 346 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 151 N1 ? ? A C 200 A G 345 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 151 O6 ? ? A C 200 A G 345 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 151 N2 ? ? A C 200 A G 345 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 150 N3 ? ? A A 201 A U 344 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 150 O4 ? ? A A 201 A U 344 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 146 N1 ? ? A U 203 A A 340 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 146 N6 ? ? A U 203 A A 340 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 145 N6 ? ? A U 204 A A 339 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog18 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 143 N3 ? ? A A 207 A U 337 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 143 O4 ? ? A A 207 A U 337 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 142 N4 ? ? A G 208 A C 336 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog21 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 141 O6 ? ? A C 209 A G 335 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog22 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 139 N1 ? ? A C 212 A G 333 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 139 O6 ? ? A C 212 A G 333 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 139 N2 ? ? A C 212 A G 333 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 19 O6 ? ? ? 1_555 A G 139 N2 ? ? A G 213 A G 333 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 137 N4 ? ? A G 215 A C 331 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog27 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 136 N1 ? ? A C 217 A G 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 136 O6 ? ? A C 217 A G 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 136 N2 ? ? A C 217 A G 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 135 N1 ? ? A U 218 A A 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 135 N6 ? ? A U 218 A A 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 25 N3 ? ? ? 1_555 A G 134 N1 ? ? A C 219 A G 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 25 N4 ? ? ? 1_555 A G 134 O6 ? ? A C 219 A G 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 25 O2 ? ? ? 1_555 A G 134 N2 ? ? A C 219 A G 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 27 N3 ? ? ? 1_555 A C 133 O2 ? ? A U 221 A C 327 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog36 hydrog ? ? A G 28 N1 ? ? ? 1_555 A U 132 O2 ? ? A G 222 A U 326 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A G 28 O6 ? ? ? 1_555 A U 132 N3 ? ? A G 222 A U 326 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog38 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 131 N1 ? ? A U 223 A A 325 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog39 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 130 N3 ? ? A A 224 A U 324 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog40 hydrog ? ? A C 31 O2 ? ? ? 1_555 A G 129 N2 ? ? A C 225 A G 323 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog41 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 128 N3 ? ? A G 226 A C 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 128 O2 ? ? A G 226 A C 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 128 N4 ? ? A G 226 A C 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 228 A G 272 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog45 hydrog ? ? A U 39 N3 ? ? ? 1_555 A G 68 O6 ? ? A U 233 A G 262 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog46 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 234 A G 261 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 234 A G 261 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 234 A G 261 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A A 41 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 235 A U 260 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A A 41 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 235 A U 260 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 236 A G 259 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog52 hydrog ? ? A U 45 O2 ? ? ? 1_555 A G 63 N2 ? ? A U 239 A G 257 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog53 hydrog ? ? A C 47 O2 ? ? ? 1_555 A G 61 N1 ? ? A C 241 A G 255 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog54 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 243 A G 254 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog55 hydrog ? ? A G 50 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 244 A C 253 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog56 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 58 N3 ? ? A G 245 A C 252 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog57 hydrog ? ? A C 81 N3 ? ? ? 1_555 A G 103 N2 ? ? A C 275 A G 297 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog58 hydrog ? ? A C 84 O2 ? ? ? 1_555 A G 100 N2 ? ? A C 278 A G 294 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog59 hydrog ? ? A G 87 N1 ? ? ? 1_555 A C 98 O2 ? ? A G 281 A C 292 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog60 hydrog ? ? A C 89 N3 ? ? ? 1_555 A G 96 N1 ? ? A C 283 A G 290 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 89 N4 ? ? ? 1_555 A G 96 O6 ? ? A C 283 A G 290 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 89 O2 ? ? ? 1_555 A G 96 N2 ? ? A C 283 A G 290 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 106 N1 ? ? ? 1_555 A U 126 N3 ? ? A A 300 A U 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 106 N6 ? ? ? 1_555 A U 126 O4 ? ? A A 300 A U 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 107 N3 ? ? ? 1_555 A G 125 N1 ? ? A C 301 A G 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 107 N4 ? ? ? 1_555 A G 125 O6 ? ? A C 301 A G 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 107 O2 ? ? ? 1_555 A G 125 N2 ? ? A C 301 A G 319 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 108 O2 ? ? ? 1_555 A G 124 N2 ? ? A C 302 A G 318 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog69 hydrog ? ? A G 111 N1 ? ? ? 1_555 A C 121 N3 ? ? A G 305 A C 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 111 N2 ? ? ? 1_555 A C 121 O2 ? ? A G 305 A C 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 111 O6 ? ? ? 1_555 A C 121 N4 ? ? A G 305 A C 315 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A C 112 N3 ? ? ? 1_555 A G 120 N1 ? ? A C 306 A G 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 112 N4 ? ? ? 1_555 A G 120 O6 ? ? A C 306 A G 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 112 O2 ? ? ? 1_555 A G 120 N2 ? ? A C 306 A G 314 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 114 N7 ? ? ? 1_555 A G 118 N2 ? ? A A 308 A G 312 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 8QO4 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8QO4 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8QO4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 5.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 29234 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '20 mM HEPES pH 7.5, 50 mM KCl, 50 mM NaCl' _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Middle East respiratory syndrome-related coronavirus' _em_entity_assembly.details 'in vitro transcription' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8QO4 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_defocus_max 2100 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIROID _em_virus_entity.virus_isolate OTHER _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped YES _em_virus_entity.empty YES _em_virus_entity.details ? # _em_vitrification.entry_id 8QO4 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 90 _em_vitrification.temp ? _em_vitrification.chamber_temperature 298 _em_vitrification.instrument 'FEI VITROBOT MARK II' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8QO4 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_admin.current_status REL _em_admin.deposition_date 2023-09-28 _em_admin.deposition_site PDBE _em_admin.entry_id 8QO4 _em_admin.last_update 2025-07-02 _em_admin.map_release_date 2024-03-06 _em_admin.title 'Conserved Structures and Dynamics in 5-Proximal Regions of Betacoronavirus RNA Genomes' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 20 mM ? 1 Hepes 1 50 mM NaCl 2 'sodium chloride' 1 50 mM KCl 3 'Potassium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1335626 _em_entity_assembly_naturalsource.organism 'Middle East respiratory syndrome-related coronavirus' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 32630 _em_entity_assembly_recombinant.organism 'synthetic construct' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? cryoSPARC 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? PHENIX ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? cryoSPARC 4 CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 0.9 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 32630 _em_virus_natural_host.organism 'synthetic construct' _em_virus_natural_host.strain ? # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8QO4 'double helix' 8QO4 'a-form double helix' 8QO4 'hairpin loop' 8QO4 'bulge loop' 8QO4 'mismatched base pair' 8QO4 'internal loop' 8QO4 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A U 1 1_555 A A 156 1_555 -1.509 0.327 -0.601 17.965 -11.238 -14.623 1 A_U195:A350_A A 195 ? A 350 ? 20 1 1 A U 2 1_555 A A 155 1_555 -1.337 0.676 -1.594 6.791 -14.900 -10.246 2 A_U196:A349_A A 196 ? A 349 ? ? ? 1 A U 3 1_555 A A 154 1_555 -0.694 -0.122 -0.394 2.145 -9.823 -14.875 3 A_U197:A348_A A 197 ? A 348 ? 20 1 1 A U 4 1_555 A A 153 1_555 0.281 -0.012 -0.488 2.174 -9.181 -17.567 4 A_U198:A347_A A 198 ? A 347 ? 20 1 1 A U 5 1_555 A A 152 1_555 -0.138 -0.033 -0.326 3.304 -4.121 -15.884 5 A_U199:A346_A A 199 ? A 346 ? 20 1 1 A C 6 1_555 A G 151 1_555 -0.613 0.002 -0.283 5.994 1.116 -15.681 6 A_C200:G345_A A 200 ? A 345 ? 19 1 1 A A 7 1_555 A U 150 1_555 1.342 -0.095 -1.284 2.203 2.073 -22.219 7 A_A201:U344_A A 201 ? A 344 ? 20 1 1 A U 9 1_555 A A 146 1_555 -0.983 0.538 -0.926 21.263 -22.317 -27.674 8 A_U203:A340_A A 203 ? A 340 ? 20 1 1 A U 10 1_555 A A 145 1_555 -1.536 0.737 -1.649 5.335 -22.486 -15.939 9 A_U204:A339_A A 204 ? A 339 ? ? ? 1 A A 13 1_555 A U 143 1_555 -0.088 -0.388 0.304 -9.539 -8.226 -10.241 10 A_A207:U337_A A 207 ? A 337 ? 20 1 1 A G 14 1_555 A C 142 1_555 -0.694 0.103 -0.093 -5.307 -6.463 -13.826 11 A_G208:C336_A A 208 ? A 336 ? ? 1 1 A C 15 1_555 A G 141 1_555 -1.740 0.800 -0.134 3.171 -1.856 -19.069 12 A_C209:G335_A A 209 ? A 335 ? ? ? 1 A C 18 1_555 A G 139 1_555 -0.159 -0.006 0.346 5.583 -12.115 3.654 13 A_C212:G333_A A 212 ? A 333 ? 19 1 1 A G 21 1_555 A C 137 1_555 -1.852 0.019 -1.513 5.298 -12.087 -26.641 14 A_G215:C331_A A 215 ? A 331 ? ? ? 1 A C 23 1_555 A G 136 1_555 -0.834 -0.289 0.932 11.732 -5.694 -8.796 15 A_C217:G330_A A 217 ? A 330 ? 19 1 1 A U 24 1_555 A A 135 1_555 -0.050 0.723 -0.726 12.759 -5.463 -0.835 16 A_U218:A329_A A 218 ? A 329 ? 20 1 1 A C 25 1_555 A G 134 1_555 -0.442 0.092 -0.590 14.699 -5.653 -1.376 17 A_C219:G328_A A 219 ? A 328 ? 19 1 1 A U 27 1_555 A C 133 1_555 -2.209 -1.161 1.724 4.112 -0.725 20.113 18 A_U221:C327_A A 221 ? A 327 ? ? ? 1 A G 28 1_555 A U 132 1_555 -2.317 -0.019 0.971 1.117 2.606 22.105 19 A_G222:U326_A A 222 ? A 326 ? 28 1 1 A U 29 1_555 A A 131 1_555 -1.605 0.507 0.587 6.343 3.453 16.613 20 A_U223:A325_A A 223 ? A 325 ? ? ? 1 A A 30 1_555 A U 130 1_555 -0.612 0.536 0.325 3.774 -0.296 11.904 21 A_A224:U324_A A 224 ? A 324 ? ? 1 1 A C 31 1_555 A G 129 1_555 -0.924 0.455 0.065 13.735 -5.033 12.156 22 A_C225:G323_A A 225 ? A 323 ? ? 1 1 A G 32 1_555 A C 128 1_555 -1.074 0.126 -0.483 4.169 -18.133 4.522 23 A_G226:C322_A A 226 ? A 322 ? 19 1 1 A C 34 1_555 A G 78 1_555 1.611 0.158 -0.741 -23.258 -3.009 9.168 24 A_C228:G272_A A 228 ? A 272 ? ? 1 1 A U 39 1_555 A G 68 1_555 0.676 -0.004 -1.389 6.456 -13.432 -16.322 25 A_U233:G262_A A 233 ? A 262 ? ? ? 1 A C 40 1_555 A G 67 1_555 0.557 0.050 -0.295 -2.448 -2.325 3.275 26 A_C234:G261_A A 234 ? A 261 ? 19 1 1 A A 41 1_555 A U 66 1_555 0.108 0.369 -0.477 -6.109 3.711 -1.937 27 A_A235:U260_A A 235 ? A 260 ? 20 1 1 A C 42 1_555 A G 65 1_555 -1.078 0.481 -0.332 7.174 3.876 -9.541 28 A_C236:G259_A A 236 ? A 259 ? ? 1 1 A U 45 1_555 A G 63 1_555 -0.607 -0.213 1.056 9.780 -7.732 -8.827 29 A_U239:G257_A A 239 ? A 257 ? ? 1 1 A C 47 1_555 A G 61 1_555 1.081 -1.054 2.393 1.053 -62.518 -12.489 30 A_C241:G255_A A 241 ? A 255 ? ? 1 1 A C 49 1_555 A G 60 1_555 -1.714 0.967 -1.589 4.749 -14.483 -21.290 31 A_C243:G254_A A 243 ? A 254 ? ? ? 1 A G 50 1_555 A C 59 1_555 0.967 0.407 -0.670 -12.545 -11.840 -19.061 32 A_G244:C253_A A 244 ? A 253 ? ? 1 1 A G 51 1_555 A C 58 1_555 2.423 0.757 0.335 -19.080 8.722 5.276 33 A_G245:C252_A A 245 ? A 252 ? ? ? 1 A C 81 1_555 A G 103 1_555 -3.660 0.527 -0.638 14.873 -16.809 -14.388 34 A_C275:G297_A A 275 ? A 297 ? ? ? 1 A C 84 1_555 A G 100 1_555 -0.183 0.758 -0.042 10.819 0.958 9.371 35 A_C278:G294_A A 278 ? A 294 ? ? 1 1 A G 87 1_555 A C 98 1_555 -2.849 -0.515 0.727 1.346 -7.353 -0.529 36 A_G281:C292_A A 281 ? A 292 ? ? ? 1 A C 89 1_555 A G 96 1_555 0.521 -0.348 0.753 0.692 -13.718 -21.728 37 A_C283:G290_A A 283 ? A 290 ? 19 1 1 A A 106 1_555 A U 126 1_555 -0.468 0.305 -0.343 -0.128 -5.103 6.929 38 A_A300:U320_A A 300 ? A 320 ? 20 1 1 A C 107 1_555 A G 125 1_555 -0.653 0.274 -0.261 5.053 -0.692 8.791 39 A_C301:G319_A A 301 ? A 319 ? 19 1 1 A C 108 1_555 A G 124 1_555 1.188 0.685 -0.157 7.690 -13.302 12.606 40 A_C302:G318_A A 302 ? A 318 ? ? 1 1 A G 111 1_555 A C 121 1_555 -0.625 -0.312 -0.112 -1.817 -3.161 -14.154 41 A_G305:C315_A A 305 ? A 315 ? 19 1 1 A C 112 1_555 A G 120 1_555 1.766 -0.139 -0.167 7.409 5.128 8.809 42 A_C306:G314_A A 306 ? A 314 ? 19 1 1 A A 114 1_555 A G 118 1_555 -6.589 -2.007 -0.005 -4.091 3.384 -100.052 43 A_A308:G312_A A 308 ? A 312 ? ? 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A U 1 1_555 A A 156 1_555 A U 2 1_555 A A 155 1_555 0.216 -1.514 3.846 2.734 10.436 34.405 -4.102 0.083 3.271 17.129 -4.488 36.008 1 AA_U195U196:A349A350_AA A 195 ? A 350 ? A 196 ? A 349 ? 1 A U 2 1_555 A A 155 1_555 A U 3 1_555 A A 154 1_555 0.575 -2.098 4.261 0.664 9.313 29.788 -6.050 -0.917 3.474 17.581 -1.253 31.185 2 AA_U196U197:A348A349_AA A 196 ? A 349 ? A 197 ? A 348 ? 1 A U 3 1_555 A A 154 1_555 A U 4 1_555 A A 153 1_555 -0.131 -1.331 3.415 1.075 9.503 36.887 -3.242 0.336 2.988 14.717 -1.666 38.064 3 AA_U197U198:A347A348_AA A 197 ? A 348 ? A 198 ? A 347 ? 1 A U 4 1_555 A A 153 1_555 A U 5 1_555 A A 152 1_555 0.171 -1.413 3.460 -0.009 7.532 31.746 -3.839 -0.307 3.053 13.532 0.016 32.605 4 AA_U198U199:A346A347_AA A 198 ? A 347 ? A 199 ? A 346 ? 1 A U 5 1_555 A A 152 1_555 A C 6 1_555 A G 151 1_555 -0.029 -1.422 3.514 0.055 7.786 31.026 -4.024 0.064 3.075 14.275 -0.101 31.965 5 AA_U199C200:G345A346_AA A 199 ? A 346 ? A 200 ? A 345 ? 1 A C 6 1_555 A G 151 1_555 A A 7 1_555 A U 150 1_555 -0.571 -1.415 3.914 3.641 13.417 37.980 -3.747 1.289 3.190 19.822 -5.380 40.356 6 AA_C200A201:U344G345_AA A 200 ? A 345 ? A 201 ? A 344 ? 1 A U 9 1_555 A A 146 1_555 A U 10 1_555 A A 145 1_555 0.762 -1.463 3.864 4.623 3.453 33.337 -3.171 -0.434 3.766 5.964 -7.985 33.819 7 AA_U203U204:A339A340_AA A 203 ? A 340 ? A 204 ? A 339 ? 1 A A 13 1_555 A U 143 1_555 A G 14 1_555 A C 142 1_555 -0.271 -1.274 3.294 1.197 8.361 30.221 -3.861 0.717 2.836 15.657 -2.241 31.352 8 AA_A207G208:C336U337_AA A 207 ? A 337 ? A 208 ? A 336 ? 1 A G 14 1_555 A C 142 1_555 A C 15 1_555 A G 141 1_555 -0.370 -1.389 3.231 -1.002 8.101 28.930 -4.235 0.521 2.760 15.822 1.958 30.036 9 AA_G208C209:G335C336_AA A 208 ? A 336 ? A 209 ? A 335 ? 1 A G 21 1_555 A C 137 1_555 A C 23 1_555 A G 136 1_555 -1.671 -1.836 4.656 -0.350 18.229 56.591 -3.114 1.667 3.958 18.699 0.359 59.223 10 AA_G215C217:G330C331_AA A 215 ? A 331 ? A 217 ? A 330 ? 1 A C 23 1_555 A G 136 1_555 A U 24 1_555 A A 135 1_555 -0.370 -2.002 4.082 -0.404 11.380 28.539 -6.328 0.608 3.080 22.009 0.782 30.683 11 AA_C217U218:A329G330_AA A 217 ? A 330 ? A 218 ? A 329 ? 1 A U 24 1_555 A A 135 1_555 A C 25 1_555 A G 134 1_555 -0.133 -1.434 3.270 -1.448 8.240 30.267 -4.116 -0.011 2.796 15.415 2.708 31.376 12 AA_U218C219:G328A329_AA A 218 ? A 329 ? A 219 ? A 328 ? 1 A C 25 1_555 A G 134 1_555 A U 27 1_555 A C 133 1_555 -0.930 -2.105 5.270 3.043 17.780 43.247 -4.871 1.553 4.080 22.969 -3.931 46.691 13 AA_C219U221:C327G328_AA A 219 ? A 328 ? A 221 ? A 327 ? 1 A U 27 1_555 A C 133 1_555 A G 28 1_555 A U 132 1_555 -0.001 -1.364 3.514 -1.347 10.981 30.716 -4.351 -0.235 2.867 19.937 2.446 32.602 14 AA_U221G222:U326C327_AA A 221 ? A 327 ? A 222 ? A 326 ? 1 A G 28 1_555 A U 132 1_555 A U 29 1_555 A A 131 1_555 -0.469 -1.401 3.292 -0.797 9.481 30.363 -4.201 0.718 2.751 17.567 1.477 31.785 15 AA_G222U223:A325U326_AA A 222 ? A 326 ? A 223 ? A 325 ? 1 A U 29 1_555 A A 131 1_555 A A 30 1_555 A U 130 1_555 -0.419 -1.233 3.427 -0.147 11.188 32.516 -3.822 0.686 2.861 19.282 0.253 34.338 16 AA_U223A224:U324A325_AA A 223 ? A 325 ? A 224 ? A 324 ? 1 A A 30 1_555 A U 130 1_555 A C 31 1_555 A G 129 1_555 -0.029 -1.506 3.128 0.525 4.859 27.532 -4.175 0.174 2.824 10.109 -1.092 27.954 17 AA_A224C225:G323U324_AA A 224 ? A 324 ? A 225 ? A 323 ? 1 A C 31 1_555 A G 129 1_555 A G 32 1_555 A C 128 1_555 -0.548 -1.262 3.499 1.823 9.813 30.657 -4.040 1.316 2.930 17.972 -3.340 32.204 18 AA_C225G226:C322G323_AA A 225 ? A 323 ? A 226 ? A 322 ? 1 A U 39 1_555 A G 68 1_555 A C 40 1_555 A G 67 1_555 1.447 -1.504 3.633 -1.623 19.161 34.253 -4.529 -2.353 2.422 29.803 2.524 39.140 19 AA_U233C234:G261G262_AA A 233 ? A 262 ? A 234 ? A 261 ? 1 A C 40 1_555 A G 67 1_555 A A 41 1_555 A U 66 1_555 -0.315 -1.417 3.610 1.450 11.450 28.741 -4.925 0.879 2.833 21.979 -2.784 30.926 20 AA_C234A235:U260G261_AA A 234 ? A 261 ? A 235 ? A 260 ? 1 A A 41 1_555 A U 66 1_555 A C 42 1_555 A G 65 1_555 -0.527 -1.546 3.234 -0.423 2.876 25.130 -4.335 1.085 3.049 6.582 0.968 25.295 21 AA_A235C236:G259U260_AA A 235 ? A 260 ? A 236 ? A 259 ? 1 A C 47 1_555 A G 61 1_555 A C 49 1_555 A G 60 1_555 -2.731 -0.991 2.575 17.536 35.312 46.778 -1.997 3.216 0.738 37.680 -18.712 60.454 22 AA_C241C243:G254G255_AA A 241 ? A 255 ? A 243 ? A 254 ? 1 A C 49 1_555 A G 60 1_555 A G 50 1_555 A C 59 1_555 1.143 -2.123 4.927 3.029 17.857 36.258 -5.854 -1.184 3.616 26.741 -4.535 40.394 23 AA_C243G244:C253G254_AA A 243 ? A 254 ? A 244 ? A 253 ? 1 A G 50 1_555 A C 59 1_555 A G 51 1_555 A C 58 1_555 1.896 -1.472 3.826 -2.468 12.492 35.578 -4.023 -3.278 3.024 19.684 3.888 37.718 24 AA_G244G245:C252C253_AA A 244 ? A 253 ? A 245 ? A 252 ? 1 A A 106 1_555 A U 126 1_555 A C 107 1_555 A G 125 1_555 -0.089 -1.546 3.255 -1.830 8.348 29.431 -4.466 -0.169 2.724 16.011 3.510 30.621 25 AA_A300C301:G319U320_AA A 300 ? A 320 ? A 301 ? A 319 ? 1 A C 107 1_555 A G 125 1_555 A C 108 1_555 A G 124 1_555 -0.516 -1.725 3.508 -3.061 15.388 30.869 -5.201 0.412 2.440 26.845 5.341 34.540 26 AA_C301C302:G318G319_AA A 301 ? A 319 ? A 302 ? A 318 ? 1 A G 111 1_555 A C 121 1_555 A C 112 1_555 A G 120 1_555 1.569 -1.245 3.206 0.120 11.361 39.780 -2.903 -2.212 2.768 16.298 -0.173 41.308 27 AA_G305C306:G314C315_AA A 305 ? A 315 ? A 306 ? A 314 ? # _pdbx_audit_support.funding_organization 'Polish National Science Centre' _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8QO4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ #