HEADER CELL CYCLE 28-SEP-23 8QOH TITLE CRYSTAL STRUCTURE OF THE KINETOPLASTID KINETOCHORE PROTEIN KKT14 C- TITLE 2 TERMINAL DOMAIN FROM APICULATAMORPHA SPIRALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINETOCHORE PROTEIN KKT14; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE N-TERMINAL GLY-SER SEQUENCE IS THE RESULT OF HIS- COMPND 6 TAG REMOVAL USING TEV PROTEASE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: APICULATAMORPHA SPIRALIS; SOURCE 3 ORGANISM_TAXID: 2795268; SOURCE 4 STRAIN: PHF-6; SOURCE 5 GENE: TR11549|C0_G1_I1|M.18554; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1 KEYWDS KINETOCHORE, KINETOPLASTID, PSEUDOKINASE, MITOSIS, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR W.CARTER,D.BALLMER,M.ISHII,P.LUDZIA,B.AKIYOSHI REVDAT 2 19-JUN-24 8QOH 1 JRNL REVDAT 1 17-JAN-24 8QOH 0 JRNL AUTH D.BALLMER,W.CARTER,J.J.E.VAN HOOFF,E.C.TROMER,M.ISHII, JRNL AUTH 2 P.LUDZIA,B.AKIYOSHI JRNL TITL KINETOPLASTID KINETOCHORE PROTEINS KKT14-KKT15 ARE DIVERGENT JRNL TITL 2 BUB1/BUBR1-BUB3 PROTEINS. JRNL REF OPEN BIOLOGY V. 14 40025 2024 JRNL REFN ESSN 2046-2441 JRNL PMID 38862021 JRNL DOI 10.1098/RSOB.240025 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.BALLMER,W.CARTER,J.J.E.VAN HOOFF,E.C.TROMER,M.ISHII, REMARK 1 AUTH 2 P.LUDZIA,B.AKIYOSHI REMARK 1 TITL KINETOPLASTID KINETOCHORE PROTEINS KKT14-KKT15 ARE DIVERGENT REMARK 1 TITL 2 BUB1/BUBR1-BUB3 PROTEINS REMARK 1 REF BIORXIV 2024 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2024.01.04.574194 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 28797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7900 - 4.7400 1.00 3041 156 0.1893 0.1787 REMARK 3 2 4.7400 - 3.7600 1.00 3007 125 0.1789 0.2511 REMARK 3 3 3.7600 - 3.2900 0.96 2878 131 0.2355 0.2160 REMARK 3 4 3.2900 - 2.9900 1.00 2969 156 0.2280 0.2615 REMARK 3 5 2.9900 - 2.7700 1.00 2963 141 0.2373 0.2764 REMARK 3 6 2.7700 - 2.6100 0.88 2612 151 0.2443 0.2172 REMARK 3 7 2.6100 - 2.4800 1.00 2926 162 0.2412 0.2704 REMARK 3 8 2.4800 - 2.3700 1.00 2976 135 0.2495 0.2516 REMARK 3 9 2.3700 - 2.2800 0.99 2991 131 0.2744 0.3145 REMARK 3 10 2.2800 - 2.2000 0.37 1080 66 0.3613 0.3958 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4403 REMARK 3 ANGLE : 1.228 5978 REMARK 3 CHIRALITY : 0.075 673 REMARK 3 PLANARITY : 0.006 769 REMARK 3 DIHEDRAL : 16.885 1596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 367 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0112 26.2834 -1.2420 REMARK 3 T TENSOR REMARK 3 T11: 0.5377 T22: 0.2836 REMARK 3 T33: 0.2974 T12: 0.0346 REMARK 3 T13: -0.0033 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.7360 L22: 2.1029 REMARK 3 L33: 1.7900 L12: 0.0079 REMARK 3 L13: 0.2970 L23: 1.4807 REMARK 3 S TENSOR REMARK 3 S11: 0.0975 S12: 0.2399 S13: 0.2508 REMARK 3 S21: -0.0369 S22: -0.2877 S23: 0.3935 REMARK 3 S31: -0.3060 S32: -0.1117 S33: 0.1866 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 405 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6964 21.2395 1.4627 REMARK 3 T TENSOR REMARK 3 T11: 0.5539 T22: 0.1630 REMARK 3 T33: 0.1794 T12: -0.0096 REMARK 3 T13: 0.0054 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.3901 L22: 0.8817 REMARK 3 L33: 1.8632 L12: -0.1674 REMARK 3 L13: -0.3759 L23: 0.2288 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0758 S13: 0.0819 REMARK 3 S21: -0.0318 S22: 0.0204 S23: -0.0632 REMARK 3 S31: -0.0835 S32: 0.0041 S33: -0.0332 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 484 THROUGH 518 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1137 5.7306 -3.7768 REMARK 3 T TENSOR REMARK 3 T11: 0.5817 T22: 0.2151 REMARK 3 T33: 0.1952 T12: -0.0135 REMARK 3 T13: -0.0020 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.2714 L22: 1.1332 REMARK 3 L33: 1.2638 L12: -0.4692 REMARK 3 L13: 0.8518 L23: 0.4859 REMARK 3 S TENSOR REMARK 3 S11: 0.0935 S12: -0.1610 S13: -0.2386 REMARK 3 S21: 0.0538 S22: 0.0386 S23: -0.1181 REMARK 3 S31: 0.1464 S32: 0.0961 S33: -0.1023 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 519 THROUGH 595 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6369 12.7235 -12.2805 REMARK 3 T TENSOR REMARK 3 T11: 0.6836 T22: 0.2245 REMARK 3 T33: 0.2143 T12: -0.0213 REMARK 3 T13: 0.0072 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.2295 L22: 0.8425 REMARK 3 L33: 1.6195 L12: -0.2046 REMARK 3 L13: 0.8256 L23: 0.7186 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: 0.1811 S13: 0.1470 REMARK 3 S21: -0.2217 S22: -0.0292 S23: 0.1105 REMARK 3 S31: -0.1784 S32: -0.1374 S33: 0.0447 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 596 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.1332 1.2278 -9.4858 REMARK 3 T TENSOR REMARK 3 T11: 0.7196 T22: 0.2625 REMARK 3 T33: 0.2684 T12: -0.0021 REMARK 3 T13: -0.0125 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.6329 L22: 2.5074 REMARK 3 L33: 2.3760 L12: -0.2262 REMARK 3 L13: 0.4774 L23: 0.7509 REMARK 3 S TENSOR REMARK 3 S11: 0.0936 S12: 0.0816 S13: -0.2044 REMARK 3 S21: 0.2226 S22: 0.1084 S23: -0.4171 REMARK 3 S31: -0.0739 S32: 0.3998 S33: -0.1853 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 368 THROUGH 404 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3149 -13.0107 36.0659 REMARK 3 T TENSOR REMARK 3 T11: 0.7118 T22: 0.2375 REMARK 3 T33: 0.2830 T12: 0.0338 REMARK 3 T13: -0.0090 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.6280 L22: 0.2791 REMARK 3 L33: 1.3431 L12: -0.0937 REMARK 3 L13: -0.5203 L23: -0.4253 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: -0.0059 S13: -0.1936 REMARK 3 S21: -0.0725 S22: -0.1158 S23: -0.2014 REMARK 3 S31: 0.2118 S32: 0.2973 S33: 0.0258 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 405 THROUGH 483 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6845 -7.9281 37.1683 REMARK 3 T TENSOR REMARK 3 T11: 0.5633 T22: 0.1703 REMARK 3 T33: 0.1509 T12: 0.0111 REMARK 3 T13: -0.0282 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.3957 L22: 1.5363 REMARK 3 L33: 2.2480 L12: -0.4495 REMARK 3 L13: -0.0885 L23: -0.1477 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: 0.0161 S13: 0.0369 REMARK 3 S21: -0.2513 S22: -0.0256 S23: 0.0857 REMARK 3 S31: 0.2067 S32: 0.0210 S33: -0.0748 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 484 THROUGH 594 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8711 2.7679 25.6073 REMARK 3 T TENSOR REMARK 3 T11: 0.6348 T22: 0.1949 REMARK 3 T33: 0.1687 T12: -0.0364 REMARK 3 T13: -0.0145 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.9086 L22: 1.4764 REMARK 3 L33: 1.3278 L12: -0.4612 REMARK 3 L13: 0.0120 L23: 0.0633 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: 0.1007 S13: 0.0367 REMARK 3 S21: -0.1309 S22: 0.0468 S23: -0.0026 REMARK 3 S31: 0.1145 S32: -0.0361 S33: -0.0379 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 595 THROUGH 640 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7303 11.9564 24.3177 REMARK 3 T TENSOR REMARK 3 T11: 0.5045 T22: 0.2676 REMARK 3 T33: 0.2398 T12: 0.0471 REMARK 3 T13: -0.0235 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.1267 L22: 1.0917 REMARK 3 L33: 1.5949 L12: 0.2343 REMARK 3 L13: -0.5406 L23: 0.4932 REMARK 3 S TENSOR REMARK 3 S11: 0.1284 S12: 0.0074 S13: 0.3283 REMARK 3 S21: 0.0603 S22: 0.0095 S23: 0.2199 REMARK 3 S31: -0.2816 S32: -0.3310 S33: -0.1009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 291 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41803 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 49.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE-LIKE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CHLORIDE, SODIUM REMARK 280 FORMATE, SOKALAN CP 45, TCEP, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.79150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 363 REMARK 465 SER B 364 REMARK 465 GLU B 365 REMARK 465 LEU B 366 REMARK 465 GLY A 363 REMARK 465 SER A 364 REMARK 465 GLU A 365 REMARK 465 LEU A 366 REMARK 465 ALA A 367 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 494 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 611 CG CD CE NZ REMARK 470 HIS A 368 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 396 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 611 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 762 O HOH A 813 1.90 REMARK 500 O HOH A 771 O HOH A 811 1.96 REMARK 500 O HOH A 797 O HOH A 833 1.97 REMARK 500 OG SER A 514 O HOH A 701 2.06 REMARK 500 OG1 THR B 511 OG1 THR B 543 2.07 REMARK 500 O HOH A 788 O HOH A 834 2.08 REMARK 500 O HOH A 778 O HOH A 808 2.08 REMARK 500 OE1 GLN B 493 O HOH B 701 2.09 REMARK 500 O HOH A 789 O HOH A 844 2.09 REMARK 500 O HOH A 806 O HOH A 832 2.12 REMARK 500 O GLU A 627 O HOH A 702 2.14 REMARK 500 O HOH A 760 O HOH A 787 2.15 REMARK 500 O TYR A 469 O HOH A 703 2.17 REMARK 500 OD2 ASP A 550 NH2 ARG A 573 2.17 REMARK 500 OD2 ASP A 430 O HOH A 704 2.18 REMARK 500 OE1 GLU B 374 O HOH B 702 2.19 REMARK 500 OE1 GLU A 559 O HOH A 705 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 577 OD2 ASP A 470 2655 1.55 REMARK 500 O HOH B 800 O HOH A 727 1554 1.97 REMARK 500 O HOH A 781 O HOH A 826 1455 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 568 C PRO B 569 N 0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER B 567 CA - C - N ANGL. DEV. = 18.8 DEGREES REMARK 500 SER B 567 O - C - N ANGL. DEV. = -16.5 DEGREES REMARK 500 LEU B 568 C - N - CA ANGL. DEV. = 24.3 DEGREES REMARK 500 LEU B 568 CA - C - N ANGL. DEV. = -21.2 DEGREES REMARK 500 LEU B 568 O - C - N ANGL. DEV. = 13.9 DEGREES REMARK 500 PRO B 569 C - N - CA ANGL. DEV. = -15.3 DEGREES REMARK 500 PRO B 569 C - N - CD ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 414 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 431 -125.95 -122.86 REMARK 500 CYS B 523 -4.32 80.55 REMARK 500 ALA B 524 47.87 -144.75 REMARK 500 VAL B 546 -61.10 -121.60 REMARK 500 ASN B 598 76.57 -115.86 REMARK 500 GLU A 431 70.16 -108.28 REMARK 500 LYS A 471 14.20 58.45 REMARK 500 GLN A 493 -150.63 -83.38 REMARK 500 CYS A 523 -5.97 81.79 REMARK 500 ALA A 524 47.57 -143.57 REMARK 500 CYS A 547 64.18 65.78 REMARK 500 VAL A 576 -41.85 -136.91 REMARK 500 LYS A 577 -19.61 74.73 REMARK 500 PHE A 639 -12.65 82.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU B 568 13.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 817 DISTANCE = 6.04 ANGSTROMS DBREF 8QOH B 363 640 PDB 8QOH 8QOH 363 640 DBREF 8QOH A 363 640 PDB 8QOH 8QOH 363 640 SEQRES 1 B 278 GLY SER GLU LEU ALA HIS PHE GLN SER GLU ILE GLU GLU SEQRES 2 B 278 ASN TYR GLU ALA VAL GLY ASN VAL VAL VAL ASP LEU MET SEQRES 3 B 278 GLY GLY CYS GLU PRO THR LEU ARG VAL GLY ARG VAL GLN SEQRES 4 B 278 LEU GLY ASN ASP ILE PHE THR LEU ARG GLU GLU ILE ARG SEQRES 5 B 278 ALA THR GLU LEU LYS ARG VAL LEU TYR VAL GLY THR THR SEQRES 6 B 278 GLU GLY ASP GLU PHE PRO VAL VAL VAL TYR ALA TRP THR SEQRES 7 B 278 ASN GLY ASN SER TYR GLU SER ALA LYS ALA PHE VAL ALA SEQRES 8 B 278 SER GLN GLY LEU ASN VAL PRO CYS ARG ILE VAL GLY TYR SEQRES 9 B 278 ARG SER TYR ASP LYS MET SER GLY TYR THR ALA ILE ILE SEQRES 10 B 278 PHE PRO GLN GLY HIS VAL TYR SER LEU ARG THR PHE LEU SEQRES 11 B 278 GLN ARG SER VAL PRO THR ARG ALA THR GLU THR ALA LEU SEQRES 12 B 278 TYR TYR VAL ALA GLU THR LEU ARG SER LEU CYS THR ARG SEQRES 13 B 278 ARG ILE ILE HIS CYS ALA LEU THR PRO ASP ASN VAL PHE SEQRES 14 B 278 MET TYR MET ASP SER THR GLY ALA SER LEU LYS THR PHE SEQRES 15 B 278 PRO VAL CYS TRP ASP ASP CYS VAL ASP ALA ALA MET PHE SEQRES 16 B 278 SER GLU ARG GLY LEU LYS PHE VAL PRO SER LEU PRO VAL SEQRES 17 B 278 LEU MET ARG HIS ALA VAL LYS GLU ILE ASP GLY SER TYR SEQRES 18 B 278 ILE ASP PHE VAL SER PHE CYS ARG MET PHE ARG GLN ILE SEQRES 19 B 278 GLU ASN ASN CYS SER ALA MET CYS GLN LYS VAL ALA LYS SEQRES 20 B 278 MET LYS ALA PRO PRO VAL VAL ARG MET THR ASP TYR THR SEQRES 21 B 278 ASN ILE GLN THR GLU LEU THR TRP ASP MET ASP ALA VAL SEQRES 22 B 278 MET ASN HIS PHE CYS SEQRES 1 A 278 GLY SER GLU LEU ALA HIS PHE GLN SER GLU ILE GLU GLU SEQRES 2 A 278 ASN TYR GLU ALA VAL GLY ASN VAL VAL VAL ASP LEU MET SEQRES 3 A 278 GLY GLY CYS GLU PRO THR LEU ARG VAL GLY ARG VAL GLN SEQRES 4 A 278 LEU GLY ASN ASP ILE PHE THR LEU ARG GLU GLU ILE ARG SEQRES 5 A 278 ALA THR GLU LEU LYS ARG VAL LEU TYR VAL GLY THR THR SEQRES 6 A 278 GLU GLY ASP GLU PHE PRO VAL VAL VAL TYR ALA TRP THR SEQRES 7 A 278 ASN GLY ASN SER TYR GLU SER ALA LYS ALA PHE VAL ALA SEQRES 8 A 278 SER GLN GLY LEU ASN VAL PRO CYS ARG ILE VAL GLY TYR SEQRES 9 A 278 ARG SER TYR ASP LYS MET SER GLY TYR THR ALA ILE ILE SEQRES 10 A 278 PHE PRO GLN GLY HIS VAL TYR SER LEU ARG THR PHE LEU SEQRES 11 A 278 GLN ARG SER VAL PRO THR ARG ALA THR GLU THR ALA LEU SEQRES 12 A 278 TYR TYR VAL ALA GLU THR LEU ARG SER LEU CYS THR ARG SEQRES 13 A 278 ARG ILE ILE HIS CYS ALA LEU THR PRO ASP ASN VAL PHE SEQRES 14 A 278 MET TYR MET ASP SER THR GLY ALA SER LEU LYS THR PHE SEQRES 15 A 278 PRO VAL CYS TRP ASP ASP CYS VAL ASP ALA ALA MET PHE SEQRES 16 A 278 SER GLU ARG GLY LEU LYS PHE VAL PRO SER LEU PRO VAL SEQRES 17 A 278 LEU MET ARG HIS ALA VAL LYS GLU ILE ASP GLY SER TYR SEQRES 18 A 278 ILE ASP PHE VAL SER PHE CYS ARG MET PHE ARG GLN ILE SEQRES 19 A 278 GLU ASN ASN CYS SER ALA MET CYS GLN LYS VAL ALA LYS SEQRES 20 A 278 MET LYS ALA PRO PRO VAL VAL ARG MET THR ASP TYR THR SEQRES 21 A 278 ASN ILE GLN THR GLU LEU THR TRP ASP MET ASP ALA VAL SEQRES 22 A 278 MET ASN HIS PHE CYS FORMUL 3 HOH *263(H2 O) HELIX 1 AA1 HIS B 368 ALA B 379 1 12 HELIX 2 AA2 TYR B 445 GLN B 455 1 11 HELIX 3 AA3 LEU B 488 LEU B 492 1 5 HELIX 4 AA4 PRO B 497 ARG B 519 1 23 HELIX 5 AA5 ALA B 554 GLY B 561 1 8 HELIX 6 AA6 LEU B 568 HIS B 574 1 7 HELIX 7 AA7 SER B 582 GLN B 595 1 14 HELIX 8 AA8 SER B 601 MET B 610 1 10 HELIX 9 AA9 ARG B 617 THR B 626 1 10 HELIX 10 AB1 ASP B 631 CYS B 640 1 10 HELIX 11 AB2 PHE A 369 ALA A 379 1 11 HELIX 12 AB3 TYR A 445 GLN A 455 1 11 HELIX 13 AB4 LEU A 488 LEU A 492 1 5 HELIX 14 AB5 PRO A 497 ARG A 519 1 23 HELIX 15 AB6 ALA A 554 GLY A 561 1 8 HELIX 16 AB7 LEU A 568 HIS A 574 1 7 HELIX 17 AB8 SER A 582 GLN A 595 1 14 HELIX 18 AB9 SER A 601 MET A 610 1 10 HELIX 19 AC1 ARG A 617 THR A 626 1 10 HELIX 20 AC2 ASP A 631 PHE A 639 1 9 SHEET 1 AA1 7 VAL B 384 LEU B 387 0 SHEET 2 AA1 7 ARG B 462 SER B 468 1 O ARG B 467 N LEU B 387 SHEET 3 AA1 7 GLY B 474 ILE B 479 -1 O ALA B 477 N VAL B 464 SHEET 4 AA1 7 PRO B 433 ALA B 438 -1 N TYR B 437 O THR B 476 SHEET 5 AA1 7 ARG B 420 THR B 427 -1 N TYR B 423 O VAL B 436 SHEET 6 AA1 7 ASP B 405 ALA B 415 -1 N ILE B 413 O LEU B 422 SHEET 7 AA1 7 GLY B 398 LEU B 402 -1 N LEU B 402 O ASP B 405 SHEET 1 AA2 3 HIS B 484 SER B 487 0 SHEET 2 AA2 3 VAL B 530 MET B 534 -1 O MET B 532 N TYR B 486 SHEET 3 AA2 3 LYS B 542 PRO B 545 -1 O LYS B 542 N TYR B 533 SHEET 1 AA3 2 ILE B 520 ILE B 521 0 SHEET 2 AA3 2 VAL B 552 ASP B 553 -1 O VAL B 552 N ILE B 521 SHEET 1 AA4 7 VAL A 384 LEU A 387 0 SHEET 2 AA4 7 ARG A 462 SER A 468 1 O ARG A 467 N LEU A 387 SHEET 3 AA4 7 GLY A 474 ILE A 479 -1 O ILE A 479 N ARG A 462 SHEET 4 AA4 7 PRO A 433 ALA A 438 -1 N VAL A 435 O ILE A 478 SHEET 5 AA4 7 ARG A 420 THR A 427 -1 N TYR A 423 O VAL A 436 SHEET 6 AA4 7 ASP A 405 ALA A 415 -1 N ILE A 413 O LEU A 422 SHEET 7 AA4 7 GLY A 398 LEU A 402 -1 N LEU A 402 O ASP A 405 SHEET 1 AA5 3 HIS A 484 SER A 487 0 SHEET 2 AA5 3 VAL A 530 MET A 534 -1 O MET A 532 N TYR A 486 SHEET 3 AA5 3 LEU A 541 PRO A 545 -1 O LYS A 542 N TYR A 533 SHEET 1 AA6 2 ILE A 520 ILE A 521 0 SHEET 2 AA6 2 VAL A 552 ASP A 553 -1 O VAL A 552 N ILE A 521 CRYST1 49.758 87.583 71.879 90.00 93.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020097 0.000000 0.001267 0.00000 SCALE2 0.000000 0.011418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013940 0.00000