HEADER UNKNOWN FUNCTION 29-SEP-23 8QOV TITLE CAPRA HIRCUS REACTIVE INTERMEDIATE DEAMINASE A MUTANT - I126Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAPRA HIRCUS; SOURCE 3 ORGANISM_COMMON: GOAT; SOURCE 4 ORGANISM_TAXID: 9925; SOURCE 5 GENE: RIDA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, DEAMINASE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.RIZZI,C.VISENTIN,F.DI PISA,S.RICAGNO REVDAT 1 26-JUN-24 8QOV 0 JRNL AUTH G.RIZZI,C.VISENTIN,F.DI PISA,S.RICAGNO JRNL TITL CAPRA HIRCUS REACTIVE INTERMEDIATE DEAMINASE A MUTANT - JRNL TITL 2 I126Y JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 29491 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2194 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.547 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2064 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2022 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2812 ; 1.681 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4651 ; 0.560 ; 1.557 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 6.405 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 10 ;11.066 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;14.120 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 333 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2439 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1094 ; 1.886 ; 2.353 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1094 ; 1.886 ; 2.352 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1367 ; 2.611 ; 4.226 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1368 ; 2.612 ; 4.226 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 970 ; 2.861 ; 2.656 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 971 ; 2.862 ; 2.657 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1440 ; 4.179 ; 4.727 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2257 ; 5.487 ;27.280 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2236 ; 5.475 ;26.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -30.0681 32.3067 1.6750 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.1300 REMARK 3 T33: 0.0630 T12: 0.0487 REMARK 3 T13: 0.0275 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.6555 L22: 0.5888 REMARK 3 L33: 0.9992 L12: -0.2498 REMARK 3 L13: -0.5766 L23: 0.6868 REMARK 3 S TENSOR REMARK 3 S11: -0.1672 S12: -0.2597 S13: -0.0780 REMARK 3 S21: -0.0179 S22: 0.1471 S23: 0.0399 REMARK 3 S31: 0.0569 S32: 0.3126 S33: 0.0201 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0477 0.6265 -26.2766 REMARK 3 T TENSOR REMARK 3 T11: 0.0648 T22: 0.0358 REMARK 3 T33: 0.0282 T12: 0.0025 REMARK 3 T13: -0.0240 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.4558 L22: 0.5371 REMARK 3 L33: 0.4743 L12: -0.0844 REMARK 3 L13: 0.4563 L23: -0.1473 REMARK 3 S TENSOR REMARK 3 S11: 0.1253 S12: -0.0219 S13: -0.0723 REMARK 3 S21: 0.0502 S22: -0.0529 S23: -0.0252 REMARK 3 S31: 0.1043 S32: -0.0164 S33: -0.0724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292132938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 41.30 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M MGCL HEXAHYDRATE, 0.1 M HEPES, REMARK 280 22% W/V POLY(ACRYLIC ACID SODIUM SALT)5100, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.37300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.37300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.37300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.37300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.37300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.37300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 44.37300 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 44.37300 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 44.37300 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 44.37300 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 44.37300 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 44.37300 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 44.37300 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 44.37300 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 44.37300 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 44.37300 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 44.37300 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 44.37300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -44.37300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -44.37300 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 44.37300 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 -44.37300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 677 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 678 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 679 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 335 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 361 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 362 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 369 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 136 REMARK 465 LEU A 137 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 THR B 134 REMARK 465 ALA B 135 REMARK 465 SER B 136 REMARK 465 LEU B 137 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE B 18 CG1 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H HIS A 0 NI NI A 501 1.15 REMARK 500 H SER A -1 NI NI A 501 1.25 REMARK 500 HG1 THR B 11 H LYS B 13 1.30 REMARK 500 HG1 THR A 11 H LYS A 13 1.32 REMARK 500 OE2 GLU B 124 O HOH B 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 126 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A -1 2.82 -164.70 REMARK 500 ASP A 28 -113.84 58.07 REMARK 500 ASP B 28 -110.87 57.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 120 0.09 SIDE CHAIN REMARK 500 ARG B 6 0.09 SIDE CHAIN REMARK 500 ARG B 29 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A -2 N REMARK 620 2 SER A -1 N 80.3 REMARK 620 3 HIS A 0 N 168.5 88.5 REMARK 620 4 HIS A 0 ND1 98.1 167.5 92.3 REMARK 620 N 1 2 3 DBREF 8QOV A 1 137 UNP P80601 RIDA_CAPHI 1 137 DBREF 8QOV B 1 137 UNP P80601 RIDA_CAPHI 1 137 SEQADV 8QOV GLY A -2 UNP P80601 EXPRESSION TAG SEQADV 8QOV SER A -1 UNP P80601 EXPRESSION TAG SEQADV 8QOV HIS A 0 UNP P80601 EXPRESSION TAG SEQADV 8QOV TYR A 126 UNP P80601 ILE 126 ENGINEERED MUTATION SEQADV 8QOV GLY B -2 UNP P80601 EXPRESSION TAG SEQADV 8QOV SER B -1 UNP P80601 EXPRESSION TAG SEQADV 8QOV HIS B 0 UNP P80601 EXPRESSION TAG SEQADV 8QOV TYR B 126 UNP P80601 ILE 126 ENGINEERED MUTATION SEQRES 1 A 140 GLY SER HIS MET SER SER LEU VAL ARG ARG ILE ILE SER SEQRES 2 A 140 THR ALA LYS ALA PRO ALA ALA ILE GLY PRO TYR SER GLN SEQRES 3 A 140 ALA VAL LEU VAL ASP ARG THR ILE TYR ILE SER GLY GLN SEQRES 4 A 140 LEU GLY MET ASP PRO ALA SER GLY GLN LEU VAL PRO GLY SEQRES 5 A 140 GLY VAL VAL GLU GLU ALA LYS GLN ALA LEU THR ASN ILE SEQRES 6 A 140 GLY GLU ILE LEU LYS ALA ALA GLY CYS ASP PHE THR ASN SEQRES 7 A 140 VAL VAL LYS ALA THR VAL LEU LEU ALA ASP ILE ASN ASP SEQRES 8 A 140 PHE SER ALA VAL ASN ASP VAL TYR LYS GLN TYR PHE GLN SEQRES 9 A 140 SER SER PHE PRO ALA ARG ALA ALA TYR GLN VAL ALA ALA SEQRES 10 A 140 LEU PRO LYS GLY GLY ARG VAL GLU ILE GLU ALA TYR ALA SEQRES 11 A 140 VAL GLN GLY PRO LEU THR THR ALA SER LEU SEQRES 1 B 140 GLY SER HIS MET SER SER LEU VAL ARG ARG ILE ILE SER SEQRES 2 B 140 THR ALA LYS ALA PRO ALA ALA ILE GLY PRO TYR SER GLN SEQRES 3 B 140 ALA VAL LEU VAL ASP ARG THR ILE TYR ILE SER GLY GLN SEQRES 4 B 140 LEU GLY MET ASP PRO ALA SER GLY GLN LEU VAL PRO GLY SEQRES 5 B 140 GLY VAL VAL GLU GLU ALA LYS GLN ALA LEU THR ASN ILE SEQRES 6 B 140 GLY GLU ILE LEU LYS ALA ALA GLY CYS ASP PHE THR ASN SEQRES 7 B 140 VAL VAL LYS ALA THR VAL LEU LEU ALA ASP ILE ASN ASP SEQRES 8 B 140 PHE SER ALA VAL ASN ASP VAL TYR LYS GLN TYR PHE GLN SEQRES 9 B 140 SER SER PHE PRO ALA ARG ALA ALA TYR GLN VAL ALA ALA SEQRES 10 B 140 LEU PRO LYS GLY GLY ARG VAL GLU ILE GLU ALA TYR ALA SEQRES 11 B 140 VAL GLN GLY PRO LEU THR THR ALA SER LEU HET NI A 501 1 HET EDO B 201 10 HET PEG B 202 17 HETNAM NI NICKEL (II) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NI NI 2+ FORMUL 4 EDO C2 H6 O2 FORMUL 5 PEG C4 H10 O3 FORMUL 6 HOH *148(H2 O) HELIX 1 AA1 GLY A 50 ALA A 69 1 20 HELIX 2 AA2 ASP A 72 THR A 74 5 3 HELIX 3 AA3 ASP A 85 ASN A 87 5 3 HELIX 4 AA4 ASP A 88 LYS A 97 1 10 HELIX 5 AA5 GLN A 98 PHE A 100 5 3 HELIX 6 AA6 LEU A 115 GLY A 119 5 5 HELIX 7 AA7 GLY B 50 ALA B 69 1 20 HELIX 8 AA8 ASP B 72 THR B 74 5 3 HELIX 9 AA9 ASP B 85 ASN B 87 5 3 HELIX 10 AB1 ASP B 88 GLN B 98 1 11 HELIX 11 AB2 LEU B 115 GLY B 119 5 5 SHEET 1 AA1 6 ARG A 6 ILE A 9 0 SHEET 2 AA1 6 ALA A 24 VAL A 27 -1 O LEU A 26 N ARG A 7 SHEET 3 AA1 6 THR A 30 LEU A 37 -1 O TYR A 32 N VAL A 25 SHEET 4 AA1 6 VAL A 121 VAL A 128 -1 O ALA A 127 N ILE A 31 SHEET 5 AA1 6 VAL A 76 LEU A 83 -1 N LEU A 82 O GLU A 122 SHEET 6 AA1 6 ALA A 106 GLN A 111 1 O ALA A 108 N VAL A 81 SHEET 1 AA2 6 ARG B 6 ILE B 9 0 SHEET 2 AA2 6 ALA B 24 VAL B 27 -1 O LEU B 26 N ARG B 7 SHEET 3 AA2 6 THR B 30 GLN B 36 -1 O THR B 30 N VAL B 27 SHEET 4 AA2 6 VAL B 121 VAL B 128 -1 O ALA B 127 N ILE B 31 SHEET 5 AA2 6 VAL B 76 LEU B 83 -1 N LEU B 82 O GLU B 122 SHEET 6 AA2 6 ALA B 106 GLN B 111 1 O ALA B 108 N VAL B 81 LINK N GLY A -2 NI NI A 501 1555 1555 2.30 LINK N SER A -1 NI NI A 501 1555 1555 1.92 LINK N HIS A 0 NI NI A 501 1555 1555 2.03 LINK ND1 HIS A 0 NI NI A 501 1555 1555 2.02 CISPEP 1 GLY A 130 PRO A 131 0 2.78 CISPEP 2 GLY B 130 PRO B 131 0 6.23 CRYST1 88.746 88.746 88.746 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011268 0.00000