HEADER BIOSYNTHETIC PROTEIN 29-SEP-23 8QOY TITLE CAPSULAR POLYSACCHARIDE SYNTHESIS MULTIENZYME OF ACTINOBACILLUS TITLE 2 PLEUROPNEUMONIAE SEROTYPE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAGF-LIKE CAPSULE POLYMERASE CPS3D; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOBACILLUS PLEUROPNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 715; SOURCE 4 GENE: CPS3D; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL PROTEIN, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.DI DOMENICO,C.LITSCHKO,J.SCHULZE,A.BETHE,J.O.CIFUENTE,A.MARINA, AUTHOR 2 I.BUDDE,T.A.MAST,M.SULEWSKA,M.BERGER,F.BUETTNER,R.GERARDY-SCHAHN, AUTHOR 3 T.FIEBIG,M.E.GUERIN REVDAT 2 10-JUL-24 8QOY 1 JRNL REVDAT 1 03-JUL-24 8QOY 0 JRNL AUTH C.LITSCHKO,V.DI DOMENICO,J.SCHULZE,S.LI,O.G.OVCHINNIKOVA, JRNL AUTH 2 T.VOSKUILEN,A.BETHE,J.O.CIFUENTE,A.MARINA,I.BUDDE,T.A.MAST, JRNL AUTH 3 M.SULEWSKA,M.BERGER,F.F.R.BUETTNER,T.L.LOWARY,C.WHITFIELD, JRNL AUTH 4 J.D.C.CODEE,M.SCHUBERT,M.E.GUERIN,T.FIEBIG JRNL TITL TRANSITION TRANSFERASES PRIME BACTERIAL CAPSULE JRNL TITL 2 POLYMERIZATION. JRNL REF NAT.CHEM.BIOL. 2024 JRNL REFN ESSN 1552-4469 JRNL PMID 38951648 JRNL DOI 10.1038/S41589-024-01664-8 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5500 - 7.5500 0.99 2886 165 0.1484 0.1668 REMARK 3 2 7.5400 - 5.9900 1.00 2842 123 0.1816 0.2059 REMARK 3 3 5.9900 - 5.2400 1.00 2793 157 0.1796 0.2165 REMARK 3 4 5.2400 - 4.7600 1.00 2810 123 0.1552 0.1932 REMARK 3 5 4.7600 - 4.4200 1.00 2804 127 0.1445 0.1707 REMARK 3 6 4.4200 - 4.1600 1.00 2794 128 0.1496 0.1566 REMARK 3 7 4.1600 - 3.9500 1.00 2785 139 0.1646 0.1910 REMARK 3 8 3.9500 - 3.7800 1.00 2734 166 0.1742 0.2382 REMARK 3 9 3.7800 - 3.6300 1.00 2751 148 0.1830 0.2347 REMARK 3 10 3.6300 - 3.5100 1.00 2752 144 0.2011 0.2605 REMARK 3 11 3.5100 - 3.4000 1.00 2764 154 0.2079 0.2640 REMARK 3 12 3.4000 - 3.3000 1.00 2709 158 0.2329 0.2832 REMARK 3 13 3.3000 - 3.2100 1.00 2792 122 0.2510 0.2941 REMARK 3 14 3.2100 - 3.1400 1.00 2776 130 0.2511 0.3362 REMARK 3 15 3.1400 - 3.0700 1.00 2748 155 0.2525 0.3225 REMARK 3 16 3.0700 - 3.0000 1.00 2714 158 0.2797 0.2836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.377 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8707 REMARK 3 ANGLE : 0.489 11781 REMARK 3 CHIRALITY : 0.041 1260 REMARK 3 PLANARITY : 0.004 1517 REMARK 3 DIHEDRAL : 5.093 1148 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -66.4012 -55.3598 7.7095 REMARK 3 T TENSOR REMARK 3 T11: 0.3883 T22: 0.4667 REMARK 3 T33: 0.4059 T12: 0.0632 REMARK 3 T13: 0.0253 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.4067 L22: 0.2602 REMARK 3 L33: 0.1319 L12: -0.2320 REMARK 3 L13: 0.1049 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.0380 S13: 0.0823 REMARK 3 S21: 0.0243 S22: 0.0289 S23: -0.0310 REMARK 3 S31: -0.0369 S32: 0.0167 S33: 0.0083 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QOY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1292133685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.67 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46791 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 41.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 62.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M MAGNESIUM SULPHATE HEPTAHYDRATE, REMARK 280 0.1 M MES PH 6.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 ASN A 4 REMARK 465 VAL A 5 REMARK 465 LYS A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 PRO A 11 REMARK 465 SER A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 HIS A 15 REMARK 465 GLY A 16 REMARK 465 LEU A 17 REMARK 465 TYR A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 LYS A 21 REMARK 465 HIS A 22 REMARK 465 GLN A 23 REMARK 465 GLN A 24 REMARK 465 TYR A 25 REMARK 465 GLN A 26 REMARK 465 LYS A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 GLU A 30 REMARK 465 ILE A 31 REMARK 465 PHE A 32 REMARK 465 ASN A 33 REMARK 465 LYS A 34 REMARK 465 ILE A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 37 REMARK 465 LYS A 38 REMARK 465 GLN A 39 REMARK 465 PRO A 40 REMARK 465 GLN A 41 REMARK 465 ASN A 42 REMARK 465 ALA A 43 REMARK 465 TYR A 44 REMARK 465 LEU A 45 REMARK 465 ASN A 46 REMARK 465 PHE A 47 REMARK 465 ARG A 48 REMARK 465 TYR A 49 REMARK 465 GLY A 50 REMARK 465 MET A 51 REMARK 465 ALA A 52 REMARK 465 LEU A 53 REMARK 465 TYR A 54 REMARK 465 LYS A 55 REMARK 465 ASP A 56 REMARK 465 LYS A 57 REMARK 465 LYS A 58 REMARK 465 TRP A 59 REMARK 465 ASP A 60 REMARK 465 GLU A 61 REMARK 465 ALA A 62 REMARK 465 ASN A 63 REMARK 465 HIS A 64 REMARK 465 PHE A 65 REMARK 465 ILE A 66 REMARK 465 GLN A 67 REMARK 465 LYS A 68 REMARK 465 ALA A 69 REMARK 465 VAL A 70 REMARK 465 GLU A 71 REMARK 465 LEU A 72 REMARK 465 ALA A 73 REMARK 465 PRO A 74 REMARK 465 GLU A 75 REMARK 465 LYS A 76 REMARK 465 GLU A 77 REMARK 465 ALA A 78 REMARK 465 TRP A 79 REMARK 465 LYS A 80 REMARK 465 LYS A 81 REMARK 465 GLN A 82 REMARK 465 LEU A 83 REMARK 465 ALA A 84 REMARK 465 THR A 85 REMARK 465 THR A 86 REMARK 465 GLU A 87 REMARK 465 ARG A 88 REMARK 465 TYR A 89 REMARK 465 LYS A 90 REMARK 465 HIS A 91 REMARK 465 ASP A 92 REMARK 465 SER A 93 REMARK 465 SER A 94 REMARK 465 LYS A 95 REMARK 465 VAL A 96 REMARK 465 LYS A 97 REMARK 465 VAL A 98 REMARK 465 ALA A 99 REMARK 465 GLY A 578 REMARK 465 THR A 579 REMARK 465 SER A 580 REMARK 465 GLN A 581 REMARK 465 SER A 582 REMARK 465 LYS A 583 REMARK 465 ASP A 584 REMARK 465 PHE A 585 REMARK 465 ASP A 586 REMARK 465 THR A 587 REMARK 465 HIS A 1146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 TYR A 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 SER A 492 OG REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 GLU A 961 CG CD OE1 OE2 REMARK 470 MET A 965 CG SD CE REMARK 470 SER A 984 OG REMARK 470 HIS A 985 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 991 CG CD CE NZ REMARK 470 VAL A1015 CG1 CG2 REMARK 470 LEU A1027 CG CD1 CD2 REMARK 470 ASP A1031 CG OD1 OD2 REMARK 470 LYS A1040 CG CD CE NZ REMARK 470 LYS A1118 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 103 -2.77 64.71 REMARK 500 ASN A 108 107.09 -53.74 REMARK 500 GLN A 127 70.97 -104.06 REMARK 500 PRO A 143 32.17 -80.83 REMARK 500 ALA A 176 78.58 -155.68 REMARK 500 CYS A 398 -158.56 58.98 REMARK 500 VAL A 460 -81.40 -128.80 REMARK 500 TRP A 478 -167.16 58.27 REMARK 500 HIS A 479 43.49 -152.28 REMARK 500 ASN A 566 46.39 -86.73 REMARK 500 LEU A 615 59.85 -107.08 REMARK 500 GLU A 617 83.82 58.22 REMARK 500 ASP A 645 -74.57 -129.19 REMARK 500 ASN A 857 30.51 -91.33 REMARK 500 ASN A 881 99.47 -69.18 REMARK 500 ARG A 900 -46.41 -133.35 REMARK 500 ILE A 963 92.60 -58.30 REMARK 500 ASN A 973 -179.12 -173.52 REMARK 500 HIS A 985 -33.45 67.63 REMARK 500 LEU A1016 49.98 -75.32 REMARK 500 PRO A1074 -175.42 -67.99 REMARK 500 ASN A1138 -134.02 -102.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 885 ND1 REMARK 620 2 ASP A 915 OD2 99.1 REMARK 620 3 HIS A1143 NE2 107.6 119.5 REMARK 620 4 HIS A1145 NE2 115.6 106.4 108.8 REMARK 620 N 1 2 3 DBREF1 8QOY A 2 1138 UNP A0A2S0ETM3_ACTPL DBREF2 8QOY A A0A2S0ETM3 2 1138 SEQADV 8QOY GLY A -2 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY PRO A -1 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY GLY A 0 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY SER A 1 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY LEU A 1139 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY GLU A 1140 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY HIS A 1141 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY HIS A 1142 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY HIS A 1143 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY HIS A 1144 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY HIS A 1145 UNP A0A2S0ETM EXPRESSION TAG SEQADV 8QOY HIS A 1146 UNP A0A2S0ETM EXPRESSION TAG SEQRES 1 A 1149 GLY PRO GLY SER LYS HIS ASN VAL LYS LEU SER SER VAL SEQRES 2 A 1149 PRO SER LEU LEU HIS GLY LEU TYR LEU TYR LYS HIS GLN SEQRES 3 A 1149 GLN TYR GLN LYS ALA GLN GLU ILE PHE ASN LYS ILE LEU SEQRES 4 A 1149 GLU LYS GLN PRO GLN ASN ALA TYR LEU ASN PHE ARG TYR SEQRES 5 A 1149 GLY MET ALA LEU TYR LYS ASP LYS LYS TRP ASP GLU ALA SEQRES 6 A 1149 ASN HIS PHE ILE GLN LYS ALA VAL GLU LEU ALA PRO GLU SEQRES 7 A 1149 LYS GLU ALA TRP LYS LYS GLN LEU ALA THR THR GLU ARG SEQRES 8 A 1149 TYR LYS HIS ASP SER SER LYS VAL LYS VAL ALA GLU ASN SEQRES 9 A 1149 LYS LYS LYS LEU GLU ALA ASN PRO ASN SER PRO GLU TYR SEQRES 10 A 1149 ILE TRP GLU TYR ALA ILE SER LEU ILE ASP SER LYS GLN SEQRES 11 A 1149 TYR TRP LEU ALA GLN PHE GLN LEU GLU LYS TYR ILE GLU SEQRES 12 A 1149 LEU LYS PRO ASN SER GLU GLN ALA PHE HIS GLN LEU GLY SEQRES 13 A 1149 ILE VAL SER GLU LYS LEU ALA ASN TYR GLU GLN ALA PHE SEQRES 14 A 1149 ILE TYR PHE GLN LYS ALA SER GLN PHE ALA PRO LEU ASN SEQRES 15 A 1149 ARG ASN TYR LYS TYR ARG MET GLY TYR ASN LEU GLU LYS SEQRES 16 A 1149 LEU GLY LYS LEU ASN GLU ALA GLN LYS CYS TYR SER LEU SEQRES 17 A 1149 VAL ILE ASP MET SER HIS PRO THR ASP GLU VAL ALA GLN SEQRES 18 A 1149 PHE GLY ILE GLY ALA LEU HIS ALA LYS ARG GLY LEU TRP SEQRES 19 A 1149 ASP MET ALA LEU SER ALA TYR LEU GLN HIS GLN ILE GLN SEQRES 20 A 1149 SER ASN SER GLN ASN PRO GLN LEU TYR TYR ARG ILE GLY SEQRES 21 A 1149 ILE ALA TYR GLU ARG LEU TYR GLN TRP THR LYS SER ALA SEQRES 22 A 1149 THR THR PHE GLU GLN ALA ILE ILE LEU SER GLU ILE MET SEQRES 23 A 1149 ASN ALA ASN TRP CYS PHE LYS CYS GLY GLN ALA TYR GLU SEQRES 24 A 1149 ARG ALA GLU ASN PHE GLU LYS SER ALA GLU PHE TYR GLN SEQRES 25 A 1149 GLU ALA VAL LYS ARG SER ASP ASN TYR ASN ASP TYR TRP SEQRES 26 A 1149 TRP TYR ARG LEU ALA LEU MET LEU GLU LYS LEU GLY LYS SEQRES 27 A 1149 TYR GLU GLN SER VAL VAL ALA PHE GLN ASN SER ARG ARG SEQRES 28 A 1149 ARG LYS LEU ALA TYR ALA VAL ASN PRO LYS ASP VAL ILE SEQRES 29 A 1149 LYS HIS LYS GLU GLU GLU PHE LEU SER TYR TYR THR GLU SEQRES 30 A 1149 TYR TYR GLU THR LEU GLU LEU ASP GLU LYS LEU VAL LEU SEQRES 31 A 1149 ILE GLU SER PHE PHE GLY GLY ASN ILE SER CYS ASN PRO SEQRES 32 A 1149 TYR ALA ILE LEU SER TYR MET LEU GLU ASN ASN TYR ASP SEQRES 33 A 1149 TYR THR TYR VAL VAL VAL ILE LYS ASP GLY THR VAL ILE SEQRES 34 A 1149 PRO ASP ASN LEU LYS PHE ASN ARG ASN ILE ILE PHE ILE SEQRES 35 A 1149 LYS ARG GLY SER ASP ALA TYR LEU ARG TYR LEU CYS THR SEQRES 36 A 1149 ALA LYS TYR LEU ILE ASN ASN VAL SER PHE PRO TYR TYR SEQRES 37 A 1149 PHE ILE ARG LYS GLU GLY GLN VAL TYR LEU ASN THR TRP SEQRES 38 A 1149 HIS GLY THR PRO MET LYS THR LEU GLY LYS ASP ILE LYS SEQRES 39 A 1149 SER PRO PHE MET ASP HIS ALA ASN VAL SER ARG ASN PHE SEQRES 40 A 1149 LEU GLN ALA THR HIS ILE ILE SER PRO ASN ARG HIS THR SEQRES 41 A 1149 THR ASP VAL ILE LEU GLU GLN TYR ASP VAL LYS ASP LEU SEQRES 42 A 1149 PHE SER GLY LYS LEU ALA GLU THR GLY TYR PRO ARG ILE SEQRES 43 A 1149 ASP LEU SER PHE ASN LEU THR ASP LYS ARG ARG ASN GLU SEQRES 44 A 1149 ILE ALA GLU LYS LEU GLY PHE SER ASN ASN LYS PRO VAL SEQRES 45 A 1149 VAL PHE TYR ALA PRO THR TRP ARG GLY THR SER GLN SER SEQRES 46 A 1149 LYS ASP PHE ASP THR SER LYS LEU GLN TYR ASP LEU ARG SEQRES 47 A 1149 LYS LEU LYS SER ASN LYS TYR ASN LEU ILE PHE ARG GLY SEQRES 48 A 1149 HIS HIS LEU VAL GLU GLN LEU LEU GLU THR ILE ASN LEU SEQRES 49 A 1149 ASP VAL THR VAL ALA PRO LYS ASP ILE ASP SER ASN GLU SEQRES 50 A 1149 LEU LEU GLY PHE CYS ASP LEU LEU ILE THR ASP TYR SER SEQRES 51 A 1149 SER ILE ILE TYR ASP PHE LEU ALA LEU SER LYS PRO ALA SEQRES 52 A 1149 ILE SER TYR ILE TYR ASP TYR GLU GLU TYR ASP ALA GLU SEQRES 53 A 1149 ARG GLY LEU TYR LEU LYS PRO THR GLU MET SER GLY THR SEQRES 54 A 1149 VAL CYS THR THR ILE THR ASP VAL LYS LYS THR ILE LEU SEQRES 55 A 1149 GLU HIS ILE SER SER GLY LYS SER ASN VAL SER GLU GLN SEQRES 56 A 1149 ASP ILE GLN LYS TYR SER TYR LEU ASP ASP GLY GLN ALA SEQRES 57 A 1149 THR LYS ARG THR VAL GLU PHE MET LEU ASP LYS ASP ASP SEQRES 58 A 1149 SER CYS ILE TYR LYS TYR GLU ARG ARG LYS SER ASP VAL SEQRES 59 A 1149 PHE PHE GLU GLY PRO PHE ILE PRO ASN GLY ILE SER ARG SEQRES 60 A 1149 SER PHE LEU ASN LEU MET ALA SER ILE LYS ASP SER GLY SEQRES 61 A 1149 LYS ASN ILE THR LEU LEU ILE ASN GLY SER ASP ILE ALA SEQRES 62 A 1149 GLN ASP GLN LYS ARG LEU GLU GLU PHE ASN ASN LEU PRO SEQRES 63 A 1149 SER ASN ILE THR VAL LEU SER ARG VAL GLY ARG THR PRO SEQRES 64 A 1149 MET THR LEU GLU GLU LEU TRP VAL ARG ASN LYS PHE GLU SEQRES 65 A 1149 GLU THR TYR GLN ILE TYR SER GLU SER PHE THR ASN THR SEQRES 66 A 1149 LEU LEU LYS VAL TYR LYS ARG GLU VAL ARG ARG LEU LEU SEQRES 67 A 1149 GLY ASN SER SER PHE ASP ASN ALA ILE HIS PHE GLU GLY SEQRES 68 A 1149 TYR SER LEU PHE TRP VAL LEU LEU PHE SER GLN ILE ASN SEQRES 69 A 1149 ALA LYS LYS HIS ILE ILE TYR GLN HIS ASN ASP LYS TYR SEQRES 70 A 1149 LYS GLU TRP LYS GLY ARG PHE PRO TYR LEU GLU GLY VAL SEQRES 71 A 1149 PHE ASN SER TYR VAL PHE PHE ASP GLN ILE VAL SER VAL SEQRES 72 A 1149 SER GLU LYS THR MET GLU ASN ASN ILE LEU ASN LEU SER SEQRES 73 A 1149 LYS GLU PHE ASN ILE PRO GLU ILE LYS PHE THR PHE CYS SEQRES 74 A 1149 ASN ASN PRO ILE ASN ILE GLN GLN ILE LEU SER SER ALA SEQRES 75 A 1149 GLU GLU ASN ILE GLU MET GLU SER GLU PHE THR LEU PHE SEQRES 76 A 1149 ASN GLY GLN LYS PHE ILE ASN ILE GLY ARG MET SER HIS SEQRES 77 A 1149 GLU LYS ASP GLN LEU LYS LEU ILE GLU ALA PHE TYR GLU SEQRES 78 A 1149 ALA LYS LYS ALA HIS VAL ASN ILE ARG LEU PHE ILE LEU SEQRES 79 A 1149 GLY ASP GLY VAL LEU LYS GLN ASP LEU ILE ASN LYS ILE SEQRES 80 A 1149 LYS ASP LEU SER LEU GLU ASP SER VAL TYR LEU LEU GLY SEQRES 81 A 1149 GLN LYS LYS ASN PRO PHE PRO TYR LEU LYS GLN ALA ASP SEQRES 82 A 1149 VAL PHE ILE LEU SER SER ASN HIS GLU GLY GLN PRO MET SEQRES 83 A 1149 VAL LEU LEU GLU SER LEU THR LEU GLY THR PRO ILE ILE SEQRES 84 A 1149 ALA THR ASP ILE VAL GLY ASN ARG SER ILE LEU GLY GLU SEQRES 85 A 1149 ASN TYR GLY THR LEU VAL GLU ASN ASN LYS ASP GLY LEU SEQRES 86 A 1149 VAL GLN GLY ILE ASN ALA TYR MET GLU LYS GLY GLY ARG SEQRES 87 A 1149 LYS ASP LYS PHE ASP PRO TYR GLU TYR GLN ASN ASP ALA SEQRES 88 A 1149 MET ALA LYS PHE TYR SER LEU LEU ALA ASN LEU GLU HIS SEQRES 89 A 1149 HIS HIS HIS HIS HIS HET SO4 A1201 5 HET SO4 A1202 5 HET ZN A1203 1 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *20(H2 O) HELIX 1 AA1 SER A 111 SER A 125 1 15 HELIX 2 AA2 GLN A 127 LYS A 142 1 16 HELIX 3 AA3 SER A 145 LEU A 159 1 15 HELIX 4 AA4 ASN A 161 GLN A 174 1 14 HELIX 5 AA5 ASN A 179 GLY A 194 1 16 HELIX 6 AA6 LYS A 195 MET A 209 1 15 HELIX 7 AA7 ASP A 214 GLY A 220 1 7 HELIX 8 AA8 ILE A 221 LYS A 227 1 7 HELIX 9 AA9 LEU A 230 ASN A 246 1 17 HELIX 10 AB1 ASN A 249 LEU A 263 1 15 HELIX 11 AB2 GLN A 265 LEU A 279 1 15 HELIX 12 AB3 ASN A 284 ALA A 298 1 15 HELIX 13 AB4 ASN A 300 SER A 315 1 16 HELIX 14 AB5 ASN A 319 LEU A 333 1 15 HELIX 15 AB6 LYS A 335 ASN A 345 1 11 HELIX 16 AB7 ASN A 356 ILE A 361 1 6 HELIX 17 AB8 HIS A 363 LEU A 379 1 17 HELIX 18 AB9 SER A 390 GLY A 394 5 5 HELIX 19 AC1 SER A 397 ASN A 410 1 14 HELIX 20 AC2 PRO A 427 LYS A 431 5 5 HELIX 21 AC3 SER A 443 CYS A 451 1 9 HELIX 22 AC4 LEU A 486 ILE A 490 5 5 HELIX 23 AC5 HIS A 497 ALA A 507 1 11 HELIX 24 AC6 ASN A 514 TYR A 525 1 12 HELIX 25 AC7 TYR A 540 ARG A 542 5 3 HELIX 26 AC8 ILE A 543 ASN A 548 1 6 HELIX 27 AC9 THR A 550 GLY A 562 1 13 HELIX 28 AD1 LYS A 589 LEU A 597 1 9 HELIX 29 AD2 HIS A 609 LEU A 615 1 7 HELIX 30 AD3 ASP A 631 CYS A 639 1 9 HELIX 31 AD4 ILE A 649 LEU A 654 1 6 HELIX 32 AD5 ALA A 655 SER A 657 5 3 HELIX 33 AD6 ASP A 666 GLY A 675 1 10 HELIX 34 AD7 LYS A 679 MET A 683 5 5 HELIX 35 AD8 THR A 690 GLY A 705 1 16 HELIX 36 AD9 SER A 710 SER A 718 1 9 HELIX 37 AE1 GLN A 724 LEU A 734 1 11 HELIX 38 AE2 ASN A 760 ILE A 773 1 14 HELIX 39 AE3 ASN A 785 GLN A 791 1 7 HELIX 40 AE4 ASP A 792 ASN A 800 1 9 HELIX 41 AE5 THR A 818 TYR A 832 1 15 HELIX 42 AE6 SER A 836 GLY A 856 1 21 HELIX 43 AE7 SER A 870 SER A 878 1 9 HELIX 44 AE8 ASP A 892 ARG A 900 1 9 HELIX 45 AE9 TYR A 903 ASN A 909 1 7 HELIX 46 AF1 SER A 910 PHE A 914 5 5 HELIX 47 AF2 SER A 921 SER A 933 1 13 HELIX 48 AF3 PRO A 939 ILE A 941 5 3 HELIX 49 AF4 ASN A 951 GLU A 961 1 11 HELIX 50 AF5 ASP A 988 HIS A 1003 1 16 HELIX 51 AF6 LYS A 1017 LEU A 1027 1 11 HELIX 52 AF7 PRO A 1042 ALA A 1049 1 8 HELIX 53 AF8 MET A 1063 LEU A 1071 1 9 HELIX 54 AF9 ILE A 1080 GLY A 1088 1 9 HELIX 55 AG1 ASN A 1098 GLY A 1113 1 16 HELIX 56 AG2 ASP A 1120 LEU A 1136 1 17 SHEET 1 AA1 7 ILE A 436 LYS A 440 0 SHEET 2 AA1 7 THR A 415 ILE A 420 1 N TYR A 416 O ILE A 437 SHEET 3 AA1 7 ASP A 382 GLU A 389 1 N ILE A 388 O VAL A 417 SHEET 4 AA1 7 ALA A 453 ASN A 458 1 O TYR A 455 N LEU A 387 SHEET 5 AA1 7 VAL A 473 ASN A 476 1 O VAL A 473 N LYS A 454 SHEET 6 AA1 7 HIS A 509 SER A 512 1 O HIS A 509 N ASN A 476 SHEET 7 AA1 7 LYS A 534 GLU A 537 1 O ALA A 536 N ILE A 510 SHEET 1 AA2 6 VAL A 623 VAL A 625 0 SHEET 2 AA2 6 ASN A 603 PHE A 606 1 N PHE A 606 O THR A 624 SHEET 3 AA2 6 VAL A 569 TYR A 572 1 N TYR A 572 O ILE A 605 SHEET 4 AA2 6 LEU A 641 THR A 644 1 O ILE A 643 N PHE A 571 SHEET 5 AA2 6 ALA A 660 TYR A 663 1 O ILE A 661 N LEU A 642 SHEET 6 AA2 6 THR A 686 CYS A 688 1 O THR A 686 N ALA A 660 SHEET 1 AA3 7 THR A 807 SER A 810 0 SHEET 2 AA3 7 ASN A 779 ILE A 784 1 N LEU A 782 O THR A 807 SHEET 3 AA3 7 SER A 749 PHE A 753 1 N ASP A 750 O THR A 781 SHEET 4 AA3 7 PHE A 860 HIS A 865 1 O ASP A 861 N SER A 749 SHEET 5 AA3 7 ALA A 882 GLN A 889 1 O ILE A 886 N HIS A 865 SHEET 6 AA3 7 GLN A 916 SER A 919 1 O VAL A 918 N GLN A 889 SHEET 7 AA3 7 PHE A 943 PHE A 945 1 O THR A 944 N SER A 919 SHEET 1 AA4 6 VAL A1033 LEU A1035 0 SHEET 2 AA4 6 ILE A1006 LEU A1011 1 N LEU A1008 O TYR A1034 SHEET 3 AA4 6 GLN A 975 ILE A 980 1 N PHE A 977 O PHE A1009 SHEET 4 AA4 6 VAL A1051 LEU A1054 1 O ILE A1053 N ILE A 978 SHEET 5 AA4 6 ILE A1075 THR A1078 1 O THR A1078 N LEU A1054 SHEET 6 AA4 6 THR A1093 VAL A1095 1 O VAL A1095 N ALA A1077 LINK ND1 HIS A 885 ZN ZN A1203 1555 1555 2.30 LINK OD2 ASP A 915 ZN ZN A1203 1555 1555 2.27 LINK NE2 HIS A1143 ZN ZN A1203 1555 1555 2.30 LINK NE2 HIS A1145 ZN ZN A1203 1555 1555 2.30 CRYST1 207.911 207.911 93.659 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004810 0.002777 0.000000 0.00000 SCALE2 0.000000 0.005554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010677 0.00000