HEADER IMMUNE SYSTEM 03-OCT-23 8QPX TITLE CRYSTAL STRUCTURE OF GEODIA CYDONIUM IMMUNOGLOBULIN-LIKE DOMAIN OF TITLE 2 RECEPTOR TYROSINE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR TYROSINE KINASE (FRAGMENT); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: REMAINING N-TERMINAL GP MOTIF FROM 3C SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEODIA CYDONIUM; SOURCE 3 ORGANISM_TAXID: 6047; SOURCE 4 GENE: TK_2L; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PACGP67A KEYWDS IG-LIKE, PORIFERA, EVOLUTION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.LOPEZ-SAGASETA,A.URDICIAIN REVDAT 2 06-NOV-24 8QPX 1 REMARK REVDAT 1 26-JUN-24 8QPX 0 JRNL AUTH J.LOPEZ-SAGASETA,A.URDICIAIN JRNL TITL CRYSTAL STRUCTURE OF GEODIA CYDONIUM IMMUNOGLOBULIN-LIKE JRNL TITL 2 DOMAIN OF RECEPTOR TYROSINE KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 14382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 689 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2455 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3044 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 134 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3101 -9.7948 6.9598 REMARK 3 T TENSOR REMARK 3 T11: 0.2291 T22: 0.1855 REMARK 3 T33: 0.3011 T12: 0.0204 REMARK 3 T13: -0.0082 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 1.9296 L22: 0.9931 REMARK 3 L33: 8.5322 L12: -0.3513 REMARK 3 L13: -2.1004 L23: 1.5620 REMARK 3 S TENSOR REMARK 3 S11: -0.1194 S12: -0.1763 S13: -0.0677 REMARK 3 S21: 0.0639 S22: 0.0296 S23: 0.0939 REMARK 3 S31: 0.0534 S32: -0.2674 S33: 0.0919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292132016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.12.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47524 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.24700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 26% W/V REMARK 280 PEG4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.36500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 128 REMARK 465 PRO A 129 REMARK 465 THR A 130 REMARK 465 PRO A 131 REMARK 465 PRO A 166 REMARK 465 ALA A 167 REMARK 465 ARG A 168 REMARK 465 GLY A 169 REMARK 465 TYR A 170 REMARK 465 GLN A 171 REMARK 465 SER A 184 REMARK 465 ASN A 197 REMARK 465 GLY A 223 REMARK 465 ALA A 224 REMARK 465 CYS A 225 REMARK 465 PRO A 226 REMARK 465 ASP A 227 REMARK 465 GLY A 228 REMARK 465 VAL A 229 REMARK 465 ASP A 230 REMARK 465 CYS A 231 REMARK 465 ASN A 232 REMARK 465 GLY A 233 REMARK 465 THR A 234 REMARK 465 GLY A 351 REMARK 465 SER A 352 REMARK 465 ASN A 353 REMARK 465 SER A 354 REMARK 465 SER A 355 REMARK 465 GLY A 356 REMARK 465 SER A 357 REMARK 465 ASN A 358 REMARK 465 SER A 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 133 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 134 CG CD1 CD2 REMARK 470 ARG A 141 CG CD NE CZ NH1 NH2 REMARK 470 SER A 164 OG REMARK 470 PRO A 165 CG CD REMARK 470 GLN A 173 CG CD OE1 NE2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 THR A 186 OG1 CG2 REMARK 470 HIS A 187 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 191 OG REMARK 470 SER A 195 OG REMARK 470 THR A 196 OG1 CG2 REMARK 470 THR A 235 OG1 CG2 REMARK 470 VAL A 237 CG1 CG2 REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 ARG A 300 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 188 -11.66 78.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 8QPX A 129 359 UNP O18431 O18431_GEOCY 129 359 SEQADV 8QPX GLY A 128 UNP O18431 EXPRESSION TAG SEQRES 1 A 232 GLY PRO THR PRO PRO PHE LEU ALA LEU SER SER PRO PRO SEQRES 2 A 232 ARG THR GLY LEU PRO VAL SER PRO ASP LEU SER GLN PRO SEQRES 3 A 232 HIS SER VAL THR LEU THR CYS SER ALA ALA SER PRO PRO SEQRES 4 A 232 ALA ARG GLY TYR GLN TYR GLN TRP GLN TRP ARG ARG ASN SEQRES 5 A 232 GLY THR LEU LEU SER ASN THR HIS THR ARG PHE SER ILE SEQRES 6 A 232 THR PRO SER THR ASN THR HIS SER SER SER LEU VAL ILE SEQRES 7 A 232 SER GLY LEU ARG TYR SER ASP ALA GLY ASP TYR MET CYS SEQRES 8 A 232 THR VAL GLU TYR GLY ALA CYS PRO ASP GLY VAL ASP CYS SEQRES 9 A 232 ASN GLY THR THR PRO VAL THR GLY THR ILE HIS LEU GLU SEQRES 10 A 232 LEU PRO LEU ILE VAL GLU VAL ASP SER SER GLY LEU VAL SEQRES 11 A 232 VAL ARG GLU GLY SER GLU VAL ILE VAL LEU THR CYS GLU SEQRES 12 A 232 VAL TYR GLY TYR PRO ARG ASP SER SER PRO PRO MET TRP SEQRES 13 A 232 SER SER PRO GLY ARG ASN LEU GLU SER GLY ARG PHE ASN SEQRES 14 A 232 ILE THR PRO ARG TYR THR GLY THR LEU SER ASN GLY SER SEQRES 15 A 232 VAL SER SER SER ASP LYS VAL ALA LEU SER GLN LEU THR SEQRES 16 A 232 ILE PHE ASN ILE THR VAL ALA ASP GLU GLY GLU TYR LYS SEQRES 17 A 232 CYS SER VAL ASP GLY GLU SER ALA SER PHE ARG VAL ASP SEQRES 18 A 232 LEU GLY GLY SER ASN SER SER GLY SER ASN SER HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET FUC B 6 10 HET NAG A 401 14 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET SO4 A 407 5 HET SO4 A 408 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 FUC C6 H12 O5 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 SO4 2(O4 S 2-) FORMUL 11 HOH *98(H2 O) HELIX 1 AA1 ARG A 209 ALA A 213 5 5 HELIX 2 AA2 THR A 327 GLU A 331 5 5 SHEET 1 AA1 4 LEU A 136 SER A 138 0 SHEET 2 AA1 4 SER A 155 ALA A 162 -1 O SER A 161 N SER A 137 SHEET 3 AA1 4 SER A 200 SER A 206 -1 O LEU A 203 N LEU A 158 SHEET 4 AA1 4 PHE A 190 PRO A 194 -1 N SER A 191 O VAL A 204 SHEET 1 AA2 4 THR A 181 LEU A 182 0 SHEET 2 AA2 4 GLN A 173 ARG A 178 -1 N ARG A 178 O THR A 181 SHEET 3 AA2 4 GLY A 214 GLU A 221 -1 O GLU A 221 N GLN A 173 SHEET 4 AA2 4 VAL A 237 LEU A 243 -1 O ILE A 241 N TYR A 216 SHEET 1 AA3 3 LEU A 247 SER A 253 0 SHEET 2 AA3 3 SER A 262 GLY A 273 -1 O GLU A 270 N GLU A 250 SHEET 3 AA3 3 VAL A 257 ARG A 259 -1 N ARG A 259 O SER A 262 SHEET 1 AA4 4 LEU A 247 SER A 253 0 SHEET 2 AA4 4 SER A 262 GLY A 273 -1 O GLU A 270 N GLU A 250 SHEET 3 AA4 4 VAL A 316 PHE A 324 -1 O LEU A 318 N CYS A 269 SHEET 4 AA4 4 PHE A 295 PRO A 299 -1 N ASN A 296 O THR A 322 SHEET 1 AA5 3 MET A 282 SER A 284 0 SHEET 2 AA5 3 GLY A 332 VAL A 338 -1 O LYS A 335 N SER A 284 SHEET 3 AA5 3 GLU A 341 VAL A 347 -1 O VAL A 347 N GLY A 332 SSBOND 1 CYS A 160 CYS A 218 1555 1555 2.03 SSBOND 2 CYS A 269 CYS A 336 1555 1555 2.03 LINK ND2 ASN A 179 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 325 C1 NAG A 401 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 FUC B 6 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.44 CISPEP 1 SER A 138 PRO A 139 0 0.12 CRYST1 40.910 32.730 92.050 90.00 90.82 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024444 0.000000 0.000350 0.00000 SCALE2 0.000000 0.030553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010865 0.00000