HEADER BLOOD CLOTTING 03-OCT-23 8QQ6 TITLE CRYSTAL STRUCTURE OF FVIIA IN COMPLEX WITH A BENZAMIDINE-BASED TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: FACTOR VII LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: COAGULATION FACTOR VII; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: PROCONVERTIN,SERUM PROTHROMBIN CONVERSION ACCELERATOR,SPCA; COMPND 9 EC: 3.4.21.21; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: TISSUE FACTOR; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: TF,COAGULATION FACTOR III,THROMBOPLASTIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F7; SOURCE 6 EXPRESSION_SYSTEM: CRICETINAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10026; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BHK/VP16; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: F7; SOURCE 14 EXPRESSION_SYSTEM: CRICETINAE; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10026; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: BHK/VP16; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 GENE: F3; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR COMPLEX, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR H.A.SCHREUDER,A.LIESUM REVDAT 1 16-OCT-24 8QQ6 0 JRNL AUTH L.TESMER,H.HANS MATTER,O.KLINGLER,M.SCHUDOK,G.HESSLER, JRNL AUTH 2 A.R.MEHDIPOUR,S.GUESSREGEN,G.HUMMER,H.A.SCHREUDER JRNL TITL CRYSTALLOGRAPHY AND MOLECULAR SIMULATIONS CAPTURE S1 POCKET JRNL TITL 2 COLLAPSE IN ALLOSTERIC REGULATION OF FACTOR VIIA AND OTHER JRNL TITL 3 SERINE PROTEASES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.8 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 55.8 REMARK 3 NUMBER OF REFLECTIONS : 34391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1603 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.32 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2724 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 30 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 704 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50790 REMARK 3 B22 (A**2) : 0.60400 REMARK 3 B33 (A**2) : -0.09610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.290 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.353 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.247 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.286 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.234 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4865 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6629 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1623 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 851 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4865 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 619 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4156 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.13 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34451 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 61.591 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 55.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 9.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.82600 REMARK 200 R SYM FOR SHELL (I) : 0.82600 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE VIIA/STF COMPLEX WAS CRYSTALLIZED REMARK 280 USING THE SITTING DROP OR THE HANGING DROP VAPOR DIFFUSION REMARK 280 METHOD. SPECIFICALLY, THE PROTEIN DROP CONTAINED 4 MG/ML VIIA/ REMARK 280 STF COMPLEX, 20 MM TRIS-HCL, PH 7.5, 200 MM NACL, 10 MM CACL2, REMARK 280 AND 10 MM PAB OR 10 MM BENZAMIDINE, WHEREAS THE RESERVOIR REMARK 280 SOLUTION CONTAINED 16-22% PEG 4000, 100 MM MGCL2, AND 20 MM REMARK 280 BISTRIS, PH 6.5. DROPS WERE PREPARED BY MIXING 2 UL OF PROTEIN REMARK 280 SOLUTION WITH 2 UL OF RESERVOIR SOLUTION AT 20 C. CRYSTALS REMARK 280 APPEARED WITHIN 7 DAYS AND WERE ALLOWED TO GROW UP TO 14-20 DAYS REMARK 280 BEFORE BEING FLASH-FROZEN WITHOUT ADDITIONAL CRYOPROTECTANT., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.26850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.18350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.30250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.18350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.26850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.30250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -31 REMARK 465 GLU C -30 REMARK 465 THR C -29 REMARK 465 PRO C -28 REMARK 465 ALA C -27 REMARK 465 TRP C -26 REMARK 465 PRO C -25 REMARK 465 ARG C -24 REMARK 465 VAL C -23 REMARK 465 PRO C -22 REMARK 465 ARG C -21 REMARK 465 PRO C -20 REMARK 465 GLU C -19 REMARK 465 THR C -18 REMARK 465 ALA C -17 REMARK 465 VAL C -16 REMARK 465 ALA C -15 REMARK 465 ARG C -14 REMARK 465 THR C -13 REMARK 465 LEU C -12 REMARK 465 LEU C -11 REMARK 465 LEU C -10 REMARK 465 GLY C -9 REMARK 465 TRP C -8 REMARK 465 VAL C -7 REMARK 465 PHE C -6 REMARK 465 ALA C -5 REMARK 465 GLN C -4 REMARK 465 VAL C -3 REMARK 465 ALA C -2 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 THR C 3 REMARK 465 THR C 4 REMARK 465 GLY C 81 REMARK 465 ASN C 82 REMARK 465 VAL C 83 REMARK 465 GLU C 84 REMARK 465 SER C 85 REMARK 465 THR C 86 REMARK 465 GLY C 87 REMARK 465 SER C 88 REMARK 465 ALA C 89 REMARK 465 GLY C 90 REMARK 465 GLY C 211 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN C 5 CG OD1 ND2 REMARK 470 GLU C 91 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 21 -83.17 -90.80 REMARK 500 CYS A 22 137.06 94.19 REMARK 500 LYS A 32 -54.47 70.48 REMARK 500 SER A 67 -173.51 -172.74 REMARK 500 GLN A 100 -94.85 -119.79 REMARK 500 ASP A 123 -3.64 -59.57 REMARK 500 LEU B 41 -65.79 -104.60 REMARK 500 ASN B 48 -175.20 -170.10 REMARK 500 HIS B 71 -56.88 -140.51 REMARK 500 SER B 214 -148.04 -90.94 REMARK 500 ASN C 137 88.19 37.74 REMARK 500 ASN C 138 -34.14 86.47 REMARK 500 THR C 172 -155.26 -121.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 465 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 466 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH B 701 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 702 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH B 703 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B 704 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B 705 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH B 706 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH B 707 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH B 708 DISTANCE = 10.08 ANGSTROMS REMARK 525 HOH C 624 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH C 625 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH C 626 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH C 627 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH C 628 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH C 629 DISTANCE = 10.02 ANGSTROMS REMARK 525 HOH C 630 DISTANCE = 10.42 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU A 16 OE11 REMARK 620 2 CGU A 16 OE21 84.0 REMARK 620 3 CGU A 26 OE12 160.5 91.3 REMARK 620 4 CGU A 26 OE22 88.5 92.7 72.8 REMARK 620 5 HOH A 325 O 86.6 75.3 110.5 167.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD1 REMARK 620 2 GLY A 47 O 86.1 REMARK 620 3 GLN A 49 OE1 87.8 68.6 REMARK 620 4 ASP A 63 OD1 156.7 86.8 68.9 REMARK 620 5 ASP A 63 OD2 149.3 78.0 109.9 48.9 REMARK 620 6 GLN A 64 O 88.0 160.6 92.7 91.4 114.9 REMARK 620 7 HOH A 327 O 82.7 71.2 139.2 115.8 67.5 126.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE1 REMARK 620 2 ASP B 72 O 80.2 REMARK 620 3 GLU B 75 O 158.0 78.1 REMARK 620 4 GLU B 80 OE2 103.4 169.8 98.5 REMARK 620 5 HOH B 518 O 87.0 84.5 94.4 86.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QOD RELATED DB: PDB REMARK 900 SAME COMPLEX WITH A DIFFERENT LIGAND DBREF 8QQ6 A 3 143 UNP P08709 FA7_HUMAN 63 203 DBREF 8QQ6 B 16 257 UNP P08709 FA7_HUMAN 213 466 DBREF 8QQ6 C -31 211 UNP P13726 TF_HUMAN 1 243 SEQRES 1 A 141 ALA PHE LEU CGU CGU LEU ARG PRO GLY SER LEU CGU ARG SEQRES 2 A 141 CGU CYS LYS CGU CGU GLN CYS SER PHE CGU CGU ALA ARG SEQRES 3 A 141 CGU ILE PHE LYS ASP ALA CGU ARG THR LYS LEU PHE TRP SEQRES 4 A 141 ILE SER TYR SER ASP GLY ASP GLN CYS ALA SER SER PRO SEQRES 5 A 141 CYS GLN ASN GLY GLY SER CYS LYS ASP GLN LEU GLN SER SEQRES 6 A 141 TYR ILE CYS PHE CYS LEU PRO ALA PHE GLU GLY ARG ASN SEQRES 7 A 141 CYS GLU THR HIS LYS ASP ASP GLN LEU ILE CYS VAL ASN SEQRES 8 A 141 GLU ASN GLY GLY CYS GLU GLN TYR CYS SER ASP HIS THR SEQRES 9 A 141 GLY THR LYS ARG SER CYS ARG CYS HIS GLU GLY TYR SER SEQRES 10 A 141 LEU LEU ALA ASP GLY VAL SER CYS THR PRO THR VAL GLU SEQRES 11 A 141 TYR PRO CYS GLY LYS ILE PRO ILE LEU GLU LYS SEQRES 1 B 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 B 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 B 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 B 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 B 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 B 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 B 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 B 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 B 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 B 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 B 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 B 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 B 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 B 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 B 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 B 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 B 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 B 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 B 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 B 254 LEU LEU ARG ALA PRO PHE PRO SEQRES 1 C 243 MET GLU THR PRO ALA TRP PRO ARG VAL PRO ARG PRO GLU SEQRES 2 C 243 THR ALA VAL ALA ARG THR LEU LEU LEU GLY TRP VAL PHE SEQRES 3 C 243 ALA GLN VAL ALA GLY ALA SER GLY THR THR ASN THR VAL SEQRES 4 C 243 ALA ALA TYR ASN LEU THR TRP LYS SER THR ASN PHE LYS SEQRES 5 C 243 THR ILE LEU GLU TRP GLU PRO LYS PRO VAL ASN GLN VAL SEQRES 6 C 243 TYR THR VAL GLN ILE SER THR LYS SER GLY ASP TRP LYS SEQRES 7 C 243 SER LYS CYS PHE TYR THR THR ASP THR GLU CYS ASP LEU SEQRES 8 C 243 THR ASP GLU ILE VAL LYS ASP VAL LYS GLN THR TYR LEU SEQRES 9 C 243 ALA ARG VAL PHE SER TYR PRO ALA GLY ASN VAL GLU SER SEQRES 10 C 243 THR GLY SER ALA GLY GLU PRO LEU TYR GLU ASN SER PRO SEQRES 11 C 243 GLU PHE THR PRO TYR LEU GLU THR ASN LEU GLY GLN PRO SEQRES 12 C 243 THR ILE GLN SER PHE GLU GLN VAL GLY THR LYS VAL ASN SEQRES 13 C 243 VAL THR VAL GLU ASP GLU ARG THR LEU VAL ARG ARG ASN SEQRES 14 C 243 ASN THR PHE LEU SER LEU ARG ASP VAL PHE GLY LYS ASP SEQRES 15 C 243 LEU ILE TYR THR LEU TYR TYR TRP LYS SER SER SER SER SEQRES 16 C 243 GLY LYS LYS THR ALA LYS THR ASN THR ASN GLU PHE LEU SEQRES 17 C 243 ILE ASP VAL ASP LYS GLY GLU ASN TYR CYS PHE SER VAL SEQRES 18 C 243 GLN ALA VAL ILE PRO SER ARG THR VAL ASN ARG LYS SER SEQRES 19 C 243 THR ASP SER PRO VAL GLU CYS MET GLY MODRES 8QQ6 CGU A 6 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 7 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 14 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 16 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 19 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 20 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 25 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 26 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 29 GLU MODIFIED RESIDUE MODRES 8QQ6 CGU A 35 GLU MODIFIED RESIDUE HET CGU A 6 12 HET CGU A 7 12 HET CGU A 14 12 HET CGU A 16 12 HET CGU A 19 12 HET CGU A 20 12 HET CGU A 25 12 HET CGU A 26 12 HET CGU A 29 12 HET CGU A 35 12 HET CA A 201 1 HET MG A 202 1 HET GLC A 203 11 HET FUC A 204 10 HET CA B 301 1 HET CL B 302 1 HET WSV B 303 32 HET CL C 301 1 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM WSV 2-AZANYL-~{N}-[[2-[2-[[3-METHOXY-4-(1,3-OXAZOL-5-YL) HETNAM 2 WSV PHENYL]AMINO]-1,3-OXAZOL-5-YL]PHENYL]METHYL]-~{N}- HETNAM 3 WSV METHYL-ETHANAMIDE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 1 CGU 10(C6 H9 N O6) FORMUL 4 CA 2(CA 2+) FORMUL 5 MG MG 2+ FORMUL 6 GLC C6 H12 O6 FORMUL 7 FUC C6 H12 O5 FORMUL 9 CL 2(CL 1-) FORMUL 10 WSV C23 H23 N5 O4 FORMUL 12 HOH *704(H2 O) HELIX 1 AA1 ALA A 3 CGU A 7 5 5 HELIX 2 AA2 SER A 12 CYS A 17 1 6 HELIX 3 AA3 SER A 23 LYS A 32 1 10 HELIX 4 AA4 ASP A 33 SER A 45 1 13 HELIX 5 AA5 ASP A 48 SER A 53 5 6 HELIX 6 AA6 ASP A 86 LEU A 89 5 4 HELIX 7 AA7 ASN A 93 CYS A 98 5 6 HELIX 8 AA8 ILE A 138 GLU A 142 5 5 HELIX 9 AA9 ALA B 55 ASP B 60 5 6 HELIX 10 AB1 ASN B 60D ARG B 62 5 3 HELIX 11 AB2 GLU B 125 THR B 129C 1 8 HELIX 12 AB3 LEU B 129D VAL B 129G 5 4 HELIX 13 AB4 MET B 164 GLN B 170A 1 8 HELIX 14 AB5 TYR B 234 SER B 244 1 11 HELIX 15 AB6 LEU C 59 VAL C 64 1 6 HELIX 16 AB7 THR C 101 THR C 106 1 6 HELIX 17 AB8 LEU C 143 GLY C 148 1 6 HELIX 18 AB9 LYS C 149 LEU C 151 5 3 SHEET 1 AA1 2 SER A 60 GLN A 64 0 SHEET 2 AA1 2 SER A 67 PHE A 71 -1 O PHE A 71 N SER A 60 SHEET 1 AA2 2 PHE A 76 GLU A 77 0 SHEET 2 AA2 2 THR A 83 HIS A 84 -1 O THR A 83 N GLU A 77 SHEET 1 AA3 2 TYR A 101 SER A 103 0 SHEET 2 AA3 2 SER A 111 ARG A 113 -1 O SER A 111 N SER A 103 SHEET 1 AA4 2 TYR A 118 LEU A 120 0 SHEET 2 AA4 2 CYS A 127 PRO A 129 -1 O THR A 128 N SER A 119 SHEET 1 AA5 8 LYS B 20 VAL B 21 0 SHEET 2 AA5 8 MET B 156 LEU B 163 -1 O VAL B 157 N LYS B 20 SHEET 3 AA5 8 MET B 180 ALA B 183 -1 O CYS B 182 N LEU B 163 SHEET 4 AA5 8 GLY B 226 ARG B 230 -1 O TYR B 228 N PHE B 181 SHEET 5 AA5 8 THR B 206 VAL B 213 -1 N ILE B 212 O THR B 229 SHEET 6 AA5 8 PRO B 198 TYR B 203 -1 N TYR B 203 O THR B 206 SHEET 7 AA5 8 PHE B 135 GLY B 140 -1 N LEU B 137 O ALA B 200 SHEET 8 AA5 8 MET B 156 LEU B 163 -1 O VAL B 160 N SER B 136 SHEET 1 AA6 8 LEU B 251 ALA B 254 0 SHEET 2 AA6 8 GLN B 81 PRO B 91 1 N VAL B 88 O LEU B 252 SHEET 3 AA6 8 ALA B 104 LEU B 108 -1 O LEU B 105 N ILE B 89 SHEET 4 AA6 8 TRP B 51 SER B 54 -1 N VAL B 52 O LEU B 106 SHEET 5 AA6 8 ALA B 39 LEU B 46 -1 N THR B 45 O VAL B 53 SHEET 6 AA6 8 GLN B 30 VAL B 35 -1 N LEU B 33 O LEU B 41 SHEET 7 AA6 8 LEU B 64 LEU B 68 -1 O ILE B 65 N LEU B 34 SHEET 8 AA6 8 GLN B 81 PRO B 91 -1 O ARG B 83 N ALA B 66 SHEET 1 AA7 3 TYR C 10 THR C 17 0 SHEET 2 AA7 3 LYS C 20 GLU C 26 -1 O GLU C 26 N TYR C 10 SHEET 3 AA7 3 GLU C 56 ASP C 58 -1 O CYS C 57 N LEU C 23 SHEET 1 AA8 4 LYS C 46 THR C 52 0 SHEET 2 AA8 4 GLN C 32 THR C 40 -1 N VAL C 36 O LYS C 48 SHEET 3 AA8 4 TYR C 71 PRO C 79 -1 O PHE C 76 N THR C 35 SHEET 4 AA8 4 LEU C 93 ASN C 96 -1 O LEU C 93 N SER C 77 SHEET 1 AA9 3 ILE C 113 GLN C 118 0 SHEET 2 AA9 3 LYS C 122 VAL C 127 -1 O THR C 126 N SER C 115 SHEET 3 AA9 3 GLU C 174 ASP C 178 -1 O ILE C 177 N VAL C 123 SHEET 1 AB1 2 ARG C 131 ARG C 136 0 SHEET 2 AB1 2 THR C 139 SER C 142 -1 O LEU C 141 N VAL C 134 SHEET 1 AB2 4 LYS C 166 THR C 170 0 SHEET 2 AB2 4 ILE C 152 LYS C 159 -1 N TYR C 157 O LYS C 166 SHEET 3 AB2 4 TYR C 185 VAL C 192 -1 O SER C 188 N TYR C 156 SHEET 4 AB2 4 GLU C 208 CYS C 209 -1 O GLU C 208 N PHE C 187 SSBOND 1 CYS A 17 CYS A 22 1555 1555 2.05 SSBOND 2 CYS A 50 CYS A 61 1555 1555 2.05 SSBOND 3 CYS A 55 CYS A 70 1555 1555 2.03 SSBOND 4 CYS A 72 CYS A 81 1555 1555 2.05 SSBOND 5 CYS A 91 CYS A 102 1555 1555 2.03 SSBOND 6 CYS A 98 CYS A 112 1555 1555 2.03 SSBOND 7 CYS A 114 CYS A 127 1555 1555 2.05 SSBOND 8 CYS A 135 CYS B 122 1555 1555 2.05 SSBOND 9 CYS B 22 CYS B 27 1555 1555 2.06 SSBOND 10 CYS B 42 CYS B 58 1555 1555 2.03 SSBOND 11 CYS B 168 CYS B 182 1555 1555 2.06 SSBOND 12 CYS B 191 CYS B 220 1555 1555 2.05 SSBOND 13 CYS C 49 CYS C 57 1555 1555 2.06 SSBOND 14 CYS C 186 CYS C 209 1555 1555 2.03 LINK C LEU A 5 N CGU A 6 1555 1555 1.34 LINK C CGU A 6 N CGU A 7 1555 1555 1.35 LINK C CGU A 7 N LEU A 8 1555 1555 1.35 LINK C LEU A 13 N CGU A 14 1555 1555 1.34 LINK C CGU A 14 N ARG A 15 1555 1555 1.34 LINK C ARG A 15 N CGU A 16 1555 1555 1.34 LINK C CGU A 16 N CYS A 17 1555 1555 1.35 LINK C LYS A 18 N CGU A 19 1555 1555 1.34 LINK C CGU A 19 N CGU A 20 1555 1555 1.33 LINK C CGU A 20 N GLN A 21 1555 1555 1.35 LINK C PHE A 24 N CGU A 25 1555 1555 1.35 LINK C CGU A 25 N CGU A 26 1555 1555 1.35 LINK C CGU A 26 N ALA A 27 1555 1555 1.36 LINK C ARG A 28 N CGU A 29 1555 1555 1.33 LINK C CGU A 29 N ILE A 30 1555 1555 1.35 LINK C ALA A 34 N CGU A 35 1555 1555 1.33 LINK C CGU A 35 N ARG A 36 1555 1555 1.35 LINK OG SER A 52 C1 GLC A 203 1555 1555 1.40 LINK OG SER A 60 C1 FUC A 204 1555 1555 1.40 LINK OE11 CGU A 16 MG MG A 202 1555 1555 2.22 LINK OE21 CGU A 16 MG MG A 202 1555 1555 2.34 LINK OE12 CGU A 26 MG MG A 202 1555 1555 2.42 LINK OE22 CGU A 26 MG MG A 202 1555 1555 2.28 LINK OD1 ASP A 46 CA CA A 201 1555 1555 2.40 LINK O GLY A 47 CA CA A 201 1555 1555 2.86 LINK OE1 GLN A 49 CA CA A 201 1555 1555 2.49 LINK OD1 ASP A 63 CA CA A 201 1555 1555 2.77 LINK OD2 ASP A 63 CA CA A 201 1555 1555 2.52 LINK O GLN A 64 CA CA A 201 1555 1555 2.22 LINK CA CA A 201 O HOH A 327 1555 1555 2.35 LINK MG MG A 202 O HOH A 325 1555 1555 2.28 LINK OE1 GLU B 70 CA CA B 301 1555 1555 2.25 LINK O ASP B 72 CA CA B 301 1555 1555 2.35 LINK O GLU B 75 CA CA B 301 1555 1555 2.17 LINK OE2 GLU B 80 CA CA B 301 1555 1555 2.30 LINK CA CA B 301 O HOH B 518 1555 1555 2.18 CISPEP 1 PHE B 256 PRO B 257 0 2.89 CISPEP 2 GLU C 26 PRO C 27 0 3.34 CRYST1 70.537 82.605 126.367 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014177 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007913 0.00000