HEADER VIRAL PROTEIN 04-OCT-23 8QQC TITLE CRYSTAL STRUCTURE OF LYMANTRIA DISPAR CPV14 POLYHEDRA SINGLE CRYSTAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYMANTRIA DISPAR; SOURCE 3 ORGANISM_COMMON: GYPSY MOTH; SOURCE 4 ORGANISM_TAXID: 13123; SOURCE 5 GENE: POD; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS POLYHEDRIN, GTP BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TRINCAO,A.WARREN,A.CRAWSHAW,G.SUTTON,D.STUART,G.EVANS REVDAT 1 08-NOV-23 8QQC 0 JRNL AUTH A.J.WARREN,J.TRINCAO,A.D.CRAWSHAW,E.BEALE,G.DULLER, JRNL AUTH 2 A.STALLWOOD,M.LUNNON,R.LITTLEWOOD,A.PRESCOTT,A.FOSTER, JRNL AUTH 3 N.SMITH,G.REHM,S.GAYADEEN,C.BLOOMER,L.ALIANELLI,D.LAUNDY, JRNL AUTH 4 J.SUTTER,L.CAHILL,G.EVANS JRNL TITL VMXM - SUB-MICRON MICROFOCUS BEAMLINE FOR MACROMOLECULAR JRNL TITL 2 CRYSTALLOGRAPHY AT DIAMOND LIGHT SOURCE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.JI,D.AXFORD,R.OWEN,G.EVANS,H.M.GINN,G.SUTTON,D.I.STUART REMARK 1 TITL POLYHEDRA STRUCTURES AND THE EVOLUTION OF THE INSECT REMARK 1 TITL 2 VIRUSES. REMARK 1 REF J STRUCT BIOL V. 192 88 2015 REMARK 1 REFN ESSN 1095-8657 REMARK 1 PMID 26291392 REMARK 1 DOI 10.1016/J.JSB.2015.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.8 REMARK 3 NUMBER OF REFLECTIONS : 40615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 3467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4500 - 3.8100 0.94 3121 172 0.1683 0.1861 REMARK 3 2 3.8000 - 3.0200 0.96 3185 155 0.1666 0.2215 REMARK 3 3 3.0200 - 2.6400 0.96 3224 125 0.1907 0.1927 REMARK 3 4 2.6300 - 2.4000 0.96 3119 168 0.2000 0.2042 REMARK 3 5 2.3900 - 2.2200 0.96 3225 153 0.1945 0.2104 REMARK 3 6 2.2200 - 2.0900 0.96 3158 174 0.1957 0.2297 REMARK 3 7 2.0900 - 1.9900 0.97 3201 146 0.2249 0.2322 REMARK 3 8 1.9900 - 1.9000 0.98 3248 154 0.2223 0.2520 REMARK 3 9 1.9000 - 1.8300 0.98 3308 144 0.2313 0.2856 REMARK 3 10 1.8300 - 1.7700 0.98 3209 165 0.2614 0.3081 REMARK 3 11 1.7600 - 1.7100 0.97 3171 223 0.2622 0.3040 REMARK 3 12 1.7100 - 1.6600 0.96 3133 204 0.2692 0.2947 REMARK 3 13 1.6600 - 1.6200 0.93 3134 120 0.2670 0.2717 REMARK 3 14 1.6200 - 1.5800 0.92 3082 122 0.2760 0.2787 REMARK 3 15 1.5800 - 1.5400 0.88 2900 159 0.2915 0.3387 REMARK 3 16 1.5400 - 1.5100 0.81 2626 157 0.3022 0.3278 REMARK 3 17 1.5100 - 1.4800 0.77 2609 110 0.3211 0.3845 REMARK 3 18 1.4800 - 1.4500 0.73 2412 126 0.3365 0.3677 REMARK 3 19 1.4500 - 1.4200 0.70 2307 105 0.3343 0.3986 REMARK 3 20 1.4200 - 1.4000 0.67 2246 117 0.3379 0.3432 REMARK 3 21 1.4000 - 1.3800 0.64 2088 132 0.3397 0.3995 REMARK 3 22 1.3800 - 1.3600 0.59 2000 65 0.3437 0.3278 REMARK 3 23 1.3600 - 1.3400 0.54 1792 96 0.3448 0.3709 REMARK 3 24 1.3400 - 1.3200 0.50 1669 97 0.3409 0.3606 REMARK 3 25 1.3200 - 1.3000 0.46 1509 78 0.3473 0.3475 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.336 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2067 REMARK 3 ANGLE : 0.882 2818 REMARK 3 CHIRALITY : 0.087 295 REMARK 3 PLANARITY : 0.007 362 REMARK 3 DIHEDRAL : 15.471 291 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QQC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : VMXM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.5814 REMARK 200 MONOCHROMATOR : HORIZONTAL DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2.MULTIPLEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40615 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 42.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.30400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.02 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 22.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN VIVO, PH 7.5, IN CELL, TEMPERATURE REMARK 280 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.55100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.55100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 51.55100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.55100 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 51.55100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 51.55100 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 51.55100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.55100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 51.55100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 51.55100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 51.55100 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 51.55100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 51.55100 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 51.55100 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 51.55100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 51.55100 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 51.55100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 51.55100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 51.55100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 51.55100 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 51.55100 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 51.55100 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 51.55100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 51.55100 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 51.55100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 51.55100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 68 REMARK 465 LYS A 69 REMARK 465 SER A 70 REMARK 465 ALA A 71 REMARK 465 ARG A 72 REMARK 465 GLU A 73 REMARK 465 PRO A 74 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 50 -21.98 -140.75 REMARK 500 ASP A 109 44.14 -77.38 REMARK 500 PHE A 216 -56.60 -141.50 REMARK 500 ASN A 229 33.76 76.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 600 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 601 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 602 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH A 603 DISTANCE = 6.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP A 301 O1G REMARK 620 2 GTP A 301 O4' 124.7 REMARK 620 3 HOH A 567 O 76.5 76.9 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8QPH RELATED DB: PDB REMARK 900 SAME MODEL REFINED AGAINST A 14 CRYSTAL DATASET DBREF 8QQC A 1 245 UNP Q91IE3 Q91IE3_9REOV 1 249 SEQADV 8QQC MET A 191 UNP Q91IE3 VAL 191 CONFLICT SEQRES 1 A 249 MET GLU ASN SER ALA ARG GLN VAL ALA GLN ASP THR ARG SEQRES 2 A 249 GLU LEU HIS LEU LEU GLN HIS ILE LYS SER ASP GLN SER SEQRES 3 A 249 TYR ILE TYR VAL PHE VAL PHE LEU TYR TYR ARG ASP HIS SEQRES 4 A 249 SER VAL ARG VAL TRP LYS LEU THR ASN PRO VAL SER ILE SEQRES 5 A 249 SER GLU THR LEU ASP TYR ASP ASP LEU ILE ASN ASN VAL SEQRES 6 A 249 ASN ARG CYS LYS SER ALA ARG GLU PRO ALA ILE TYR TYR SEQRES 7 A 249 ARG GLU GLY ILE THR GLY ASN ASP ALA GLY ASP SER ILE SEQRES 8 A 249 ILE ASP LYS ALA TYR CYS GLU PRO VAL SER PHE MET ILE SEQRES 9 A 249 VAL ALA CYS GLY ASP VAL ASP ILE GLN THR ILE GLU VAL SEQRES 10 A 249 ASN ILE GLN GLY TYR ASP GLU ILE GLU GLY VAL GLY ILE SEQRES 11 A 249 LEU ASP SER ASN VAL THR PRO PRO TYR ALA ILE THR ALA SEQRES 12 A 249 THR LYS PHE GLU ARG LYS THR SER GLY GLY TYR ILE PHE SEQRES 13 A 249 TYR THR TYR CYS GLY LEU PHE GLY HIS GLY ASP ARG GLY SEQRES 14 A 249 HIS PRO THR MET ALA VAL GLY VAL GLU LYS LYS ASN ARG SEQRES 15 A 249 ASN ALA PHE GLY ARG MET HIS PRO MET TYR VAL ALA ALA SEQRES 16 A 249 ASN TYR LYS ARG ARG ASN PHE TRP ALA LYS LYS ASP TRP SEQRES 17 A 249 TRP PHE PRO THR GLU GLY GLN MET VAL GLU GLN PHE ILE SEQRES 18 A 249 LYS GLN GLN SER ILE PRO TYR VAL THR ALA ASP ASN VAL SEQRES 19 A 249 MET ILE ALA PRO CYS VAL ARG GLU ILE ARG HIS HIS ALA SEQRES 20 A 249 HIS TYR HET GTP A 301 32 HET MG A 302 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 MG MG 2+ FORMUL 4 HOH *203(H2 O) HELIX 1 AA1 SER A 4 SER A 23 1 20 HELIX 2 AA2 ASP A 57 ILE A 62 1 6 HELIX 3 AA3 ILE A 76 GLY A 84 1 9 HELIX 4 AA4 GLY A 129 SER A 133 5 5 HELIX 5 AA5 PRO A 137 ILE A 141 5 5 HELIX 6 AA6 THR A 142 PHE A 146 5 5 HELIX 7 AA7 GLY A 166 HIS A 170 5 5 HELIX 8 AA8 TYR A 192 LYS A 198 1 7 HELIX 9 AA9 THR A 208 PHE A 216 1 9 SHEET 1 AA1 6 GLU A 147 SER A 151 0 SHEET 2 AA1 6 TYR A 154 LEU A 162 -1 O PHE A 156 N LYS A 149 SHEET 3 AA1 6 SER A 101 GLY A 108 -1 N ILE A 104 O TYR A 159 SHEET 4 AA1 6 ILE A 28 TYR A 35 -1 N PHE A 33 O MET A 103 SHEET 5 AA1 6 VAL A 41 ASN A 48 -1 O ARG A 42 N LEU A 34 SHEET 6 AA1 6 LYS A 204B PHE A 206 -1 O LYS A 204B N LYS A 45 SHEET 1 AA2 3 SER A 51 LEU A 56 0 SHEET 2 AA2 3 THR A 172 LYS A 179 -1 O MET A 173 N LEU A 56 SHEET 3 AA2 3 VAL A 110 GLN A 120 -1 N ASN A 118 O ALA A 174 SHEET 1 AA3 2 TYR A 224 VAL A 225 0 SHEET 2 AA3 2 MET A 231 ILE A 232 -1 O ILE A 232 N TYR A 224 LINK O1G GTP A 301 MG MG A 302 1555 1555 2.27 LINK O4' GTP A 301 MG MG A 302 1555 1555 2.09 LINK MG MG A 302 O HOH A 567 1555 1555 2.86 CISPEP 1 PHE A 202 TRP A 203 0 7.69 CRYST1 103.102 103.102 103.102 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009699 0.00000