HEADER    BIOSYNTHETIC PROTEIN                    09-OCT-23   8QRX              
TITLE     SOLUTION NMR STRUCTURE OF THE PEPTIDYL CARRIER DOMAIN TOMAPCP FROM THE
TITLE    2 TOMAYMYCIN NON-RIBOSOMAL PEPTIDE SYNTHETASE IN ITS SUBSTRATE-LOADED  
TITLE    3 STATE                                                                
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TOMAPCP SUBSTRATE-LOADED FROM THE TOMAYMYCIN NON-RIBOSOMAL 
COMPND   3 PEPTIDE SYNTHETASE;                                                  
COMPND   4 CHAIN: A;                                                            
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 OTHER_DETAILS: FIRST FOUR RESIDUES (GPMA) IN THE PROTEIN ARE FROM    
COMPND   7 CLONING ARTIFACTS. THEREFORE, THE APPROPRIATE RESIDUE NUMBERING HAS  
COMPND   8 THE FIRST RESIDUE (G) DESIGNATED AS RESIDUE-NUMBER '-3', SO THAT THE 
COMPND   9 FIFTH RESIDUE HAS RESIDUE-NUMBER '1'. A SPECIAL MODIFIED RESIDUE SPA 
COMPND  10 IS DESIGNATED FOR THE SERINE RESIDUE COVALENTLY LINKED TO A 4'-      
COMPND  11 PHOSPHOPANTETHEINE-ANTHRANILATE PROSTHETIC GROUP.                    
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: STREPTOMYCES REGENSIS;                          
SOURCE   3 ORGANISM_TAXID: 68263;                                               
SOURCE   4 VARIANT: FH6421;                                                     
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562                                         
KEYWDS    NON-RIBOSOMAL PEPTIDE SYNTHETASE, NRPS, TOMAYMYCIN, PEPTIDYL CARRIER  
KEYWDS   2 PROTEIN, PCP, PHOSPHOPANTETHEINE, DONOR, LOADED, SUBSTRATE-LOADED,   
KEYWDS   3 BIOSYNTHETIC PROTEIN                                                 
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    M.N.KARANTH,J.P.KIRKPATRICK,T.CARLOMAGNO                              
REVDAT   2   03-JUL-24 8QRX    1       JRNL                                     
REVDAT   1   26-JUN-24 8QRX    0                                                
JRNL        AUTH   M.N.KARANTH,J.P.KIRKPATRICK,J.KRAUSZE,S.SCHMELZ,A.SCRIMA,    
JRNL        AUTH 2 T.CARLOMAGNO                                                 
JRNL        TITL   THE SPECIFICITY OF INTERMODULAR RECOGNITION IN A             
JRNL        TITL 2 PROTOTYPICAL NONRIBOSOMAL PEPTIDE SYNTHETASE DEPENDS ON AN   
JRNL        TITL 3 ADAPTOR DOMAIN.                                              
JRNL        REF    SCI ADV                       V.  10 M9404 2024              
JRNL        REFN                   ESSN 2375-2548                               
JRNL        PMID   38896613                                                     
JRNL        DOI    10.1126/SCIADV.ADM9404                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.21, CNS 1.21, CNS 1.21                         
REMARK   3   AUTHORS     : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ         
REMARK   3                 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND       
REMARK   3                 READ (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES      
REMARK   3                 AND READ (CNS)                                       
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 8QRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-23.                  
REMARK 100 THE DEPOSITION ID IS D_1292133649.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 265                                
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 350 UM [U-13C; U-15N] TOMAPCP      
REMARK 210                                   SUBSTRATE-LOADED, 50 MM SODIUM     
REMARK 210                                   PHOSPHATE, 150 MM SODIUM           
REMARK 210                                   CHLORIDE, 0.02 W/V SODIUM AZIDE,   
REMARK 210                                   10 V/V [U-2H] D2O, 90% H2O/10%     
REMARK 210                                   D2O; 100 UM [U-13C; U-15N]         
REMARK 210                                   TOMAPCP SUBSTRATE-LOADED, 50 MM    
REMARK 210                                   SODIUM PHOSPHATE, 150 MM SODIUM    
REMARK 210                                   CHLORIDE, 0.02 W/V SODIUM AZIDE,   
REMARK 210                                   10 V/V [U-2H] D2O, 90% H2O/10%     
REMARK 210                                   D2O; 500 UM [U-13C; U-15N]         
REMARK 210                                   TOMAPCP SUBSTRATE-LOADED, 50 MM    
REMARK 210                                   SODIUM PHOSPHATE, 150 MM SODIUM    
REMARK 210                                   CHLORIDE, 0.02 % W/V SODIUM        
REMARK 210                                   AZIDE, 100 V/V [U-2H] D2O, 100%    
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC;    
REMARK 210                                   3D 1H-15N NOESY; 3D 1H-13C NOESY   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 850 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE III; AVANCE III HD          
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : TOPSPIN 3.2, NMRPIPE 10.2,         
REMARK 210                                   CCPNMR ANALYSIS 2.4, ARIA 2.3      
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PRO A  -2      108.64    -58.62                                   
REMARK 500  1 ASN A  82       85.16     60.27                                   
REMARK 500  2 ALA A   2       48.64   -164.27                                   
REMARK 500  2 THR A  87      -71.87   -153.74                                   
REMARK 500  3 MET A  -1      -61.72     74.00                                   
REMARK 500  3 ALA A   2      104.33   -161.89                                   
REMARK 500  4 GLN A   4       60.68   -109.94                                   
REMARK 500  4 ASN A   5       72.28     63.65                                   
REMARK 500  4 ARG A  81      -53.85   -121.58                                   
REMARK 500  4 ASN A  82       81.40     54.17                                   
REMARK 500  5 ALA A   0      146.96     69.73                                   
REMARK 500  5 THR A   1      -51.71     74.60                                   
REMARK 500  5 ALA A   2       44.45    -99.97                                   
REMARK 500  5 ALA A  85       41.70    -99.40                                   
REMARK 500  6 ALA A   0      -74.15    179.84                                   
REMARK 500  6 ALA A   2     -175.92     63.32                                   
REMARK 500  6 GLN A   4      -60.54   -139.46                                   
REMARK 500  7 ASN A   5       65.38   -164.97                                   
REMARK 500  7 THR A  87      -65.35     74.10                                   
REMARK 500  8 THR A   1      -70.48   -107.85                                   
REMARK 500  8 PRO A   6     -117.58    -79.77                                   
REMARK 500  8 ALA A  84      102.06    -54.04                                   
REMARK 500  9 ASP A  23       30.54    -90.03                                   
REMARK 500  9 ASN A  82      121.84     68.64                                   
REMARK 500  9 ALA A  85      120.43     66.19                                   
REMARK 500  9 GLN A  86     -161.52     62.79                                   
REMARK 500  9 THR A  87       33.76     70.17                                   
REMARK 500 10 THR A   1       86.67     67.60                                   
REMARK 500 10 GLN A   4      -83.84     69.05                                   
REMARK 500 10 PRO A   6      -77.55    -60.37                                   
REMARK 500 10 ASN A  82      120.57     71.93                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 34869   RELATED DB: BMRB                                 
REMARK 900 SOLUTION NMR STRUCTURE OF THE PEPTIDYL CARRIER DOMAIN TOMAPCP FROM   
REMARK 900 THE TOMAYMYCIN NON-RIBOSOMAL PEPTIDE SYNTHETASE IN ITS SUBSTRATE-    
REMARK 900 LOADED STATE                                                         
DBREF  8QRX A   -3    88  PDB    8QRX     8QRX            -3     88             
SEQRES   1 A   92  GLY PRO MET ALA THR ALA VAL GLN ASN PRO LEU GLU THR          
SEQRES   2 A   92  VAL VAL LEU GLN ALA TRP LYS ASP ILE SER GLY ALA ASP          
SEQRES   3 A   92  ASP PHE THR THR THR ASP SER PHE LEU GLY HIS GLY GLY          
SEQRES   4 A   92  ASN WP9 LEU HIS PHE VAL GLN LEU ALA SER ARG LEU GLN          
SEQRES   5 A   92  LYS ILE PHE GLY VAL GLU VAL SER THR GLU ASP VAL PHE          
SEQRES   6 A   92  ARG HIS GLY THR VAL GLU GLN LEU ALA ARG PHE VAL GLU          
SEQRES   7 A   92  GLN SER ARG ASP THR GLY ARG ASN PRO ALA ALA GLN THR          
SEQRES   8 A   92  GLN                                                          
HET    WP9  A  37      66                                                       
HETNAM     WP9 ~{S}-[2-[3-[[(2~{R})-4-[[(2~{S})-2-AZANYL-3-                     
HETNAM   2 WP9  OXIDANYLIDENE-PROPOXY]-OXIDANYL-PHOSPHORYL]OXY-3,3-             
HETNAM   3 WP9  DIMETHYL-2-OXIDANYL-                                            
HETNAM   4 WP9  BUTANOYL]AMINO]PROPANOYLAMINO]ETHYL] 2-                         
HETNAM   5 WP9  AZANYLBENZENECARBOTHIOATE                                       
FORMUL   1  WP9    C21 H33 N4 O9 P S                                            
HELIX    1 AA1 LEU A    7  SER A   19  1                                  13    
HELIX    2 AA2 WP9 A   37  PHE A   51  1                                  15    
HELIX    3 AA3 THR A   57  HIS A   63  1                                   7    
HELIX    4 AA4 VAL A   66  THR A   79  1                                  14    
LINK         C   ASN A  36                 N   WP9 A  37     1555   1555  1.33  
LINK         C   WP9 A  37                 N   LEU A  38     1555   1555  1.33  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1