HEADER TRANSFERASE 13-OCT-23 8QTY TITLE LYTR LCP DOMAIN FROM STREPTOCOCCUS DYSGALACTIAE SUBS. DYSGALACTIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIOFILM REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYTR,BRPA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS DYSGALACTIAE SUBSP. DYSGALACTIAE; SOURCE 3 ORGANISM_TAXID: 99822; SOURCE 4 STRAIN: VSD9; SOURCE 5 GENE: LYTR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LYTR-CPSA-PSR, WALL TEICHOIC ACIDS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.PAQUETE-FERREIRA,M.J.ROMAO,T.SANTOS-SILVA REVDAT 1 04-SEP-24 8QTY 0 JRNL AUTH J.PAQUETE-FERREIRA,F.FREIRE,H.S.FERNANDES,J.MUTHUKUMARAN, JRNL AUTH 2 J.RAMOS,J.BRYTON,A.PANJKOVICH,D.SVERGUN,M.F.A.SANTOS, JRNL AUTH 3 M.A.S.CORREIA,A.R.FERNANDES,M.J.ROMAO,S.F.SOUSA, JRNL AUTH 4 T.SANTOS-SILVA JRNL TITL STRUCTURAL INSIGHTS OF AN LCP PROTEIN-LYTR-FROM JRNL TITL 2 STREPTOCOCCUS DYSGALACTIAE SUBS. DYSGALACTIAE THROUGH JRNL TITL 3 BIOPHYSICAL AND IN SILICO METHODS. JRNL REF FRONT CHEM V. 12 79914 2024 JRNL REFN ESSN 2296-2646 JRNL PMID 39170866 JRNL DOI 10.3389/FCHEM.2024.1379914 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.279 REMARK 3 FREE R VALUE TEST SET COUNT : 895 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1140 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.93200 REMARK 3 B22 (A**2) : -0.93200 REMARK 3 B33 (A**2) : 1.86500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.409 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.324 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.551 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2111 ; 0.017 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2047 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2857 ; 1.968 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4712 ; 0.623 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 268 ; 6.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 11 ;18.605 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 388 ;24.182 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2453 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 445 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 370 ; 0.249 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 81 ; 0.517 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1042 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 4.044 ; 5.429 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1078 ; 4.044 ; 5.429 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1344 ; 5.689 ; 9.809 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1345 ; 5.687 ; 9.809 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1033 ; 2.661 ; 5.690 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1020 ; 2.678 ; 5.686 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1513 ; 4.475 ;10.442 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1496 ; 4.500 ;10.434 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 334 REMARK 3 RESIDUE RANGE : A 401 A 403 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7071 -27.7840 -18.4244 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.0798 REMARK 3 T33: 0.1695 T12: -0.0759 REMARK 3 T13: -0.0937 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 5.0681 L22: 2.7598 REMARK 3 L33: 1.1350 L12: -0.8968 REMARK 3 L13: 0.1769 L23: 0.2493 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: 0.0350 S13: -0.1776 REMARK 3 S21: 0.0166 S22: 0.1820 S23: 0.0527 REMARK 3 S31: 0.2897 S32: -0.0409 S33: -0.1093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8QTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.608 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULPHATE 20% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 70.63550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.87100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 70.63550 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.87100 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 70.63550 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.87100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 70.63550 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.87100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.63550 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.87100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 70.63550 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.87100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 70.63550 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.87100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 70.63550 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 70.63550 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.87100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 525 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 47 REMARK 465 SER A 48 REMARK 465 LYS A 49 REMARK 465 LYS A 50 REMARK 465 SER A 51 REMARK 465 ASP A 52 REMARK 465 ALA A 53 REMARK 465 ILE A 54 REMARK 465 LYS A 55 REMARK 465 GLN A 56 REMARK 465 GLY A 70 REMARK 465 SER A 71 REMARK 465 SER A 72 REMARK 465 GLU A 73 REMARK 465 ARG A 74 REMARK 465 THR A 75 REMARK 465 SER A 76 REMARK 465 GLN A 77 REMARK 465 ASN A 335 REMARK 465 LEU A 336 REMARK 465 TYR A 337 REMARK 465 GLY A 338 REMARK 465 SER A 339 REMARK 465 ARG A 340 REMARK 465 LYS A 341 REMARK 465 SER A 342 REMARK 465 ALA A 343 REMARK 465 LEU A 344 REMARK 465 GLU A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 177 CE2 TYR A 220 7555 1.19 REMARK 500 OD2 ASP A 177 HE2 TYR A 220 7555 1.26 REMARK 500 OD2 ASP A 177 CZ TYR A 220 7555 1.29 REMARK 500 O GLU A 122 HG23 THR A 192 3555 1.32 REMARK 500 CG ASP A 177 HE2 TYR A 220 7555 1.53 REMARK 500 OE1 GLU A 122 HG22 THR A 192 3555 1.55 REMARK 500 OD2 ASP A 177 OH TYR A 220 7555 1.63 REMARK 500 CG ASP A 177 CE2 TYR A 220 7555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 175 CD GLU A 175 OE1 0.122 REMARK 500 GLU A 188 CD GLU A 188 OE1 0.086 REMARK 500 GLU A 188 CD GLU A 188 OE2 0.087 REMARK 500 GLU A 228 CD GLU A 228 OE1 0.077 REMARK 500 GLU A 289 CD GLU A 289 OE1 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 84 143.91 -174.06 REMARK 500 ALA A 239 5.00 -62.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 275 0.23 SIDE CHAIN REMARK 500 ARG A 315 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDTG2 RELATED DB: SASBDB REMARK 900 RELATED ID: SASDTH2 RELATED DB: SASBDB DBREF1 8QTY A 48 342 UNP A0A0A7LTX5_STRDY DBREF2 8QTY A A0A0A7LTX5 48 342 SEQADV 8QTY MET A 47 UNP A0A0A7LTX INITIATING METHIONINE SEQADV 8QTY ALA A 343 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY LEU A 344 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY GLU A 345 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY HIS A 346 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY HIS A 347 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY HIS A 348 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY HIS A 349 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY HIS A 350 UNP A0A0A7LTX EXPRESSION TAG SEQADV 8QTY HIS A 351 UNP A0A0A7LTX EXPRESSION TAG SEQRES 1 A 305 MET SER LYS LYS SER ASP ALA ILE LYS GLN THR LYS SER SEQRES 2 A 305 PHE SER ILE LEU LEU MET GLY VAL ASP THR GLY SER SER SEQRES 3 A 305 GLU ARG THR SER GLN TRP GLU GLY ASN SER ASP SER MET SEQRES 4 A 305 ILE LEU VAL THR VAL ASN PRO GLU THR LYS LYS THR THR SEQRES 5 A 305 MET THR SER LEU GLU ARG ASP ILE LEU ILE THR LEU SER SEQRES 6 A 305 GLY PRO LYS ASN ASN ASP MET ASN GLY ALA GLU ALA LYS SEQRES 7 A 305 LEU ASN ALA ALA TYR ALA ALA GLY GLY ALA GLN MET ALA SEQRES 8 A 305 ILE MET THR VAL GLN ASP LEU LEU ASN ILE THR ILE ASP SEQRES 9 A 305 ASN TYR VAL GLN ILE ASN MET GLN GLY LEU ILE ASP LEU SEQRES 10 A 305 VAL ASP ALA VAL GLY GLY ILE THR VAL THR ASN GLU PHE SEQRES 11 A 305 ASP PHE PRO ILE SER ILE ALA ASP ASN GLU PRO GLU TYR SEQRES 12 A 305 GLN ALA THR VAL ALA PRO GLY THR HIS LYS VAL ASN GLY SEQRES 13 A 305 GLU GLN ALA LEU VAL TYR ALA ARG MET ARG TYR ASP ASP SEQRES 14 A 305 PRO GLU GLY ASP TYR GLY ARG GLN LYS ARG GLN ARG GLU SEQRES 15 A 305 VAL ILE GLN LYS VAL LEU LYS LYS ILE LEU ALA LEU ASP SEQRES 16 A 305 SER ILE SER SER TYR ARG LYS ILE LEU SER ALA VAL SER SEQRES 17 A 305 GLY ASN MET GLN THR ASN ILE GLU ILE SER SER ASN THR SEQRES 18 A 305 ILE PRO GLY LEU LEU GLY TYR ARG ASP ALA LEU LYS THR SEQRES 19 A 305 ILE LYS THR TYR GLN LEU LYS GLY GLU ASP ALA THR LEU SEQRES 20 A 305 SER ASP GLY GLY SER TYR GLN ILE VAL THR SER ASP HIS SEQRES 21 A 305 LEU LEU GLU THR GLN ASN ARG ILE ARG GLY GLU LEU GLY SEQRES 22 A 305 LEU ARG LYS VAL THR GLN LEU LYS THR SER ALA THR VAL SEQRES 23 A 305 TYR GLU ASN LEU TYR GLY SER ARG LYS SER ALA LEU GLU SEQRES 24 A 305 HIS HIS HIS HIS HIS HIS HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 5 HOH *25(H2 O) HELIX 1 AA1 ASN A 126 ASN A 146 1 21 HELIX 2 AA2 ASN A 156 ALA A 166 1 11 HELIX 3 AA3 ASN A 201 MET A 211 1 11 HELIX 4 AA4 GLU A 217 ALA A 239 1 23 HELIX 5 AA5 SER A 242 VAL A 253 1 12 HELIX 6 AA6 ASN A 266 GLY A 273 1 8 HELIX 7 AA7 TYR A 274 LYS A 279 5 6 HELIX 8 AA8 THR A 303 LEU A 318 1 16 SHEET 1 AA1 6 MET A 257 THR A 259 0 SHEET 2 AA1 6 ASN A 151 ILE A 155 -1 N GLN A 154 O GLN A 258 SHEET 3 AA1 6 PHE A 60 ASP A 68 1 N MET A 65 O VAL A 153 SHEET 4 AA1 6 ASN A 81 ASN A 91 -1 O ILE A 86 N LEU A 64 SHEET 5 AA1 6 LYS A 96 LEU A 102 -1 O LEU A 102 N MET A 85 SHEET 6 AA1 6 THR A 280 LEU A 286 1 O THR A 280 N THR A 97 SHEET 1 AA2 2 LEU A 107 THR A 109 0 SHEET 2 AA2 2 GLU A 122 LYS A 124 -1 O ALA A 123 N ILE A 108 SHEET 1 AA3 2 ILE A 170 ASN A 174 0 SHEET 2 AA3 2 GLY A 196 VAL A 200 -1 O VAL A 200 N ILE A 170 SHEET 1 AA4 2 GLU A 289 THR A 292 0 SHEET 2 AA4 2 SER A 298 ILE A 301 -1 O TYR A 299 N ALA A 291 CRYST1 141.271 141.271 133.742 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007079 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007477 0.00000