HEADER LYASE 17-OCT-23 8QVD TITLE DEINOCOCCUS AERIUS TR0125 C-GLUCOSYL DEGLYCOSIDASE (CGD), WILD TYPE TITLE 2 CRYSTAL CRYOPROTECTED WITH GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE-LIKE TIM BARREL DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DUF6379 DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS AERIUS; SOURCE 3 ORGANISM_TAXID: 200253; SOURCE 4 STRAIN: TR0125; SOURCE 5 GENE: DAERI_200053; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: (DE3)-T1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHO; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: DEINOCOCCUS AERIUS; SOURCE 13 ORGANISM_TAXID: 200253; SOURCE 14 STRAIN: TR0125; SOURCE 15 GENE: DAERI_200052; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: (DE3)-T1; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: 2A-T KEYWDS BACTERIAL C-GLUCOSYL DEGLYCOSIDASE, C-C BOND CLEAVAGE, C-GLUCOSYL KEYWDS 2 AROMATIC POLYKETIDES, C-GLUCOSYL FLAVONOIDS, DEINOCOCCUS AERIUS, KEYWDS 3 SOIL BACTERIUM, N-TERMINAL DUF6379 BETA-SANDWICH DOMAIN, C-TERMINAL KEYWDS 4 TIM-BARREL DOMAIN, ALPHA2BETA2 HETEROTETRAMER, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR V.FURLANETTO,D.C.KALYANI,A.KOSTELAC,D.HALTRICH,B.M.HALLBERG,C.DIVNE REVDAT 1 29-MAY-24 8QVD 0 JRNL AUTH V.FURLANETTO,D.C.KALYANI,A.KOSTELAC,J.PUC,D.HALTRICH, JRNL AUTH 2 B.M.HALLBERG,C.DIVNE JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A GENE CLUSTER JRNL TITL 2 RESPONSIBLE FOR DEGLYCOSYLATION OF C-GLUCOSYL FLAVONOIDS AND JRNL TITL 3 XANTHONOIDS BY DEINOCOCCUS AERIUS. JRNL REF J.MOL.BIOL. V. 436 68547 2024 JRNL REFN ESSN 1089-8638 JRNL PMID 38508304 JRNL DOI 10.1016/J.JMB.2024.168547 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 18156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5100 - 7.7500 0.99 1284 153 0.1796 0.2485 REMARK 3 2 7.7500 - 6.1600 1.00 1282 149 0.2099 0.2779 REMARK 3 3 6.1500 - 5.3800 0.99 1266 132 0.2194 0.2710 REMARK 3 4 5.3800 - 4.8900 1.00 1262 128 0.1919 0.2743 REMARK 3 5 4.8900 - 4.5400 0.99 1255 148 0.1708 0.2045 REMARK 3 6 4.5400 - 4.2700 0.99 1235 138 0.2010 0.2536 REMARK 3 7 4.2700 - 4.0600 0.99 1259 139 0.2310 0.2810 REMARK 3 8 4.0600 - 3.8800 0.99 1241 142 0.2583 0.3265 REMARK 3 9 3.8800 - 3.7300 0.99 1233 146 0.3052 0.3554 REMARK 3 10 3.7300 - 3.6000 0.99 1240 137 0.3523 0.4276 REMARK 3 11 3.6000 - 3.4900 0.99 1226 147 0.3974 0.4330 REMARK 3 12 3.4900 - 3.3900 1.00 1274 145 0.4395 0.5025 REMARK 3 13 3.3900 - 3.3000 0.99 1272 123 0.4784 0.4510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.510 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 7422 REMARK 3 ANGLE : 1.434 10024 REMARK 3 CHIRALITY : 0.079 1064 REMARK 3 PLANARITY : 0.016 1320 REMARK 3 DIHEDRAL : 5.911 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 14.0587 16.9542 -22.1771 REMARK 3 T TENSOR REMARK 3 T11: 1.4795 T22: 1.1563 REMARK 3 T33: 1.1473 T12: 0.0142 REMARK 3 T13: 0.0347 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 0.0976 L22: 1.3117 REMARK 3 L33: 1.0548 L12: 0.0277 REMARK 3 L13: -0.0229 L23: -0.1240 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.0332 S13: -0.0284 REMARK 3 S21: -0.2309 S22: -0.0765 S23: -0.0457 REMARK 3 S31: 0.0042 S32: 0.2087 S33: 0.1234 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953731 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : COMPOUND REFRACTIVE LENSES REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18261 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.19300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 12% (W/V) REMARK 280 POLYETHYLENE GLYCOL 3,350, 5 MM COCL2, 5 MM CDCL2, 5 MM MGCL2, REMARK 280 AND 5 MM NICL2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.89000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 ARG A 328 REMARK 465 GLU A 329 REMARK 465 VAL A 330 REMARK 465 ALA A 331 REMARK 465 HIS A 332 REMARK 465 VAL A 333 REMARK 465 ALA A 334 REMARK 465 GLU A 335 REMARK 465 ASN A 336 REMARK 465 LEU A 337 REMARK 465 TYR A 338 REMARK 465 PHE A 339 REMARK 465 GLN A 340 REMARK 465 SER A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 GLN C 3 REMARK 465 ARG C 328 REMARK 465 GLU C 329 REMARK 465 VAL C 330 REMARK 465 ALA C 331 REMARK 465 HIS C 332 REMARK 465 VAL C 333 REMARK 465 ALA C 334 REMARK 465 GLU C 335 REMARK 465 ASN C 336 REMARK 465 LEU C 337 REMARK 465 TYR C 338 REMARK 465 PHE C 339 REMARK 465 GLN C 340 REMARK 465 SER C 341 REMARK 465 HIS C 342 REMARK 465 HIS C 343 REMARK 465 HIS C 344 REMARK 465 HIS C 345 REMARK 465 HIS C 346 REMARK 465 HIS C 347 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET B 1 CE2 PHE B 2 1.03 REMARK 500 CE1 HIS A 239 CD CD A 507 2.16 REMARK 500 O ASP C 269 NH2 ARG C 323 2.16 REMARK 500 O LYS C 261 OH TYR C 276 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 264 117.38 -163.59 REMARK 500 SER A 273 -9.94 -146.68 REMARK 500 PHE B 2 26.21 48.04 REMARK 500 GLU B 70 52.62 -105.41 REMARK 500 LEU B 123 99.50 -68.99 REMARK 500 GLU C 264 117.77 -164.10 REMARK 500 SER C 273 -10.41 -147.98 REMARK 500 GLU D 70 52.88 -105.11 REMARK 500 LEU D 123 99.24 -68.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 105 0.09 SIDE CHAIN REMARK 500 ARG B 60 0.07 SIDE CHAIN REMARK 500 ARG C 105 0.09 SIDE CHAIN REMARK 500 ARG D 60 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 502 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 61.0 REMARK 620 3 ASP A 61 OD1 76.0 104.0 REMARK 620 4 ASP A 61 OD2 95.6 65.4 60.1 REMARK 620 5 HIS A 182 NE2 57.7 108.9 30.6 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 503 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 64 NE2 REMARK 620 2 GLU A 206 OE2 41.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 OE2 REMARK 620 2 ASP A 175 OD2 86.2 REMARK 620 3 HIS A 259 ND1 75.0 77.6 REMARK 620 4 GLU A 295 OE1 144.0 89.0 69.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 46 OE2 REMARK 620 2 HIS B 89 NE2 136.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 502 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 57 OD1 REMARK 620 2 ASP C 57 OD2 61.2 REMARK 620 3 ASP C 61 OD1 79.5 103.8 REMARK 620 4 ASP C 61 OD2 95.6 64.2 57.8 REMARK 620 5 HIS C 182 NE2 60.1 109.9 32.3 87.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 503 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 64 NE2 REMARK 620 2 GLU C 206 OE2 35.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 143 OE2 REMARK 620 2 ASP C 175 OD2 79.7 REMARK 620 3 HIS C 259 ND1 75.0 84.2 REMARK 620 4 GLU C 295 OE1 141.8 72.8 76.3 REMARK 620 5 GLU C 295 OE2 136.1 129.8 76.9 57.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD D 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 46 OE2 REMARK 620 2 HIS D 89 NE2 128.7 REMARK 620 N 1 DBREF1 8QVD A 1 333 UNP A0A2I9DAN1_9DEIO DBREF2 8QVD A A0A2I9DAN1 1 333 DBREF1 8QVD B 1 125 UNP A0A2I9E2I0_9DEIO DBREF2 8QVD B A0A2I9E2I0 1 125 DBREF1 8QVD C 1 333 UNP A0A2I9DAN1_9DEIO DBREF2 8QVD C A0A2I9DAN1 1 333 DBREF1 8QVD D 1 125 UNP A0A2I9E2I0_9DEIO DBREF2 8QVD D A0A2I9E2I0 1 125 SEQADV 8QVD ALA A 334 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD GLU A 335 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD ASN A 336 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD LEU A 337 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD TYR A 338 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD PHE A 339 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD GLN A 340 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD SER A 341 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS A 342 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS A 343 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS A 344 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS A 345 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS A 346 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS A 347 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD ALA C 334 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD GLU C 335 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD ASN C 336 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD LEU C 337 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD TYR C 338 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD PHE C 339 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD GLN C 340 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD SER C 341 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS C 342 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS C 343 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS C 344 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS C 345 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS C 346 UNP A0A2I9DAN EXPRESSION TAG SEQADV 8QVD HIS C 347 UNP A0A2I9DAN EXPRESSION TAG SEQRES 1 A 347 MET THR GLN PRO GLN ILE LYS ARG GLY VAL SER LEU TYR SEQRES 2 A 347 SER PHE GLN GLU GLU PHE PHE LEU ARG LYS MET THR LEU SEQRES 3 A 347 GLU ASP CYS VAL ALA ALA CYS ALA SER MET GLY ALA TYR SEQRES 4 A 347 GLY ILE GLU SER LEU ALA GLU GLN MET MET PRO GLY PHE SEQRES 5 A 347 PRO ASN LEU ASP ASP ALA PHE TYR ASP GLY TRP HIS ALA SEQRES 6 A 347 MET MET ALA LYS TYR GLY THR VAL SER VAL CYS HIS ASP SEQRES 7 A 347 MET PHE LEU ASP THR LYS LYS PHE ARG GLY ARG LEU MET SEQRES 8 A 347 THR LEU ASP GLU GLN VAL GLU SER PHE VAL ARG ASP ILE SEQRES 9 A 347 ARG HIS ALA SER ARG LEU GLY CYS THR VAL ILE ARG VAL SEQRES 10 A 347 LEU ASN PHE VAL SER PRO GLU LEU MET GLU LYS VAL LEU SEQRES 11 A 347 PRO HIS ALA GLU GLN SER ASN MET ARG LEU GLY LEU GLU SEQRES 12 A 347 ILE HIS ALA PRO MET HIS PHE GLU HIS PRO TRP VAL LEU SEQRES 13 A 347 ARG HIS ILE GLU PHE MET ASP ARG LEU GLY SER PRO LEU SEQRES 14 A 347 LEU GLY PHE ILE PRO ASP MET GLY ILE PHE THR LYS HIS SEQRES 15 A 347 PHE PRO PRO VAL MET ALA GLU ARG LEU ILE ARG GLN GLY SEQRES 16 A 347 ALA THR PRO HIS ILE ILE GLU TYR ILE ARG GLU GLN TYR SEQRES 17 A 347 ASP ARG ARG VAL LEU ALA GLU TYR VAL VAL GLY ASP VAL SEQRES 18 A 347 ARG ASN MET GLY GLY ASN PRO VAL ASP ILE ARG ALA ALA SEQRES 19 A 347 GLU MET LEU ARG HIS ASN ASN TRP SER ASN PRO ARG ARG SEQRES 20 A 347 LEU LEU GLU HIS MET ASP ARG ILE PHE HIS VAL HIS ALA SEQRES 21 A 347 LYS PHE TYR GLU MET ASP GLU GLN ASP ARG GLU THR SER SEQRES 22 A 347 LEU GLY TYR GLU GLU VAL ILE PRO VAL LEU LYS GLU GLY SEQRES 23 A 347 GLY TYR SER GLY TYR LEU ALA SER GLU TYR GLU GLY ASN SEQRES 24 A 347 ARG HIS ILE GLN ASP ALA PHE GLU VAL ASP SER VAL GLU SEQRES 25 A 347 GLN VAL ARG ARG HIS GLN ARG MET LEU ALA ARG LEU ILE SEQRES 26 A 347 GLY GLU ARG GLU VAL ALA HIS VAL ALA GLU ASN LEU TYR SEQRES 27 A 347 PHE GLN SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 125 MET PHE ASP LYS TYR ILE VAL VAL GLU ASP SER LEU LYS SEQRES 2 B 125 ARG VAL PRO GLY GLY VAL GLN PHE GLY VAL ARG LEU PRO SEQRES 3 B 125 TYR TYR ARG GLY LEU GLY LEU SER MET VAL GLU THR MET SEQRES 4 B 125 ASP VAL THR VAL ASP GLY GLU ARG VAL PRO GLU GLU ASN SEQRES 5 B 125 LEU THR VAL THR LEU GLY ASP ARG THR VAL PRO PHE ALA SEQRES 6 B 125 ARG ARG ASP ASP GLU THR ASP THR ILE TRP ASN PHE GLY SEQRES 7 B 125 GLU ILE ALA THR VAL THR ALA ARG LEU PRO HIS GLU LEU SEQRES 8 B 125 GLY PRO GLY GLU HIS GLN VAL GLY VAL ASN PHE GLY LEU SEQRES 9 B 125 ARG ILE SER TYR PHE PRO VAL PRO MET VAL GLY GLN ASP SEQRES 10 B 125 ALA LYS THR LEU LYS LEU VAL ASP SEQRES 1 C 347 MET THR GLN PRO GLN ILE LYS ARG GLY VAL SER LEU TYR SEQRES 2 C 347 SER PHE GLN GLU GLU PHE PHE LEU ARG LYS MET THR LEU SEQRES 3 C 347 GLU ASP CYS VAL ALA ALA CYS ALA SER MET GLY ALA TYR SEQRES 4 C 347 GLY ILE GLU SER LEU ALA GLU GLN MET MET PRO GLY PHE SEQRES 5 C 347 PRO ASN LEU ASP ASP ALA PHE TYR ASP GLY TRP HIS ALA SEQRES 6 C 347 MET MET ALA LYS TYR GLY THR VAL SER VAL CYS HIS ASP SEQRES 7 C 347 MET PHE LEU ASP THR LYS LYS PHE ARG GLY ARG LEU MET SEQRES 8 C 347 THR LEU ASP GLU GLN VAL GLU SER PHE VAL ARG ASP ILE SEQRES 9 C 347 ARG HIS ALA SER ARG LEU GLY CYS THR VAL ILE ARG VAL SEQRES 10 C 347 LEU ASN PHE VAL SER PRO GLU LEU MET GLU LYS VAL LEU SEQRES 11 C 347 PRO HIS ALA GLU GLN SER ASN MET ARG LEU GLY LEU GLU SEQRES 12 C 347 ILE HIS ALA PRO MET HIS PHE GLU HIS PRO TRP VAL LEU SEQRES 13 C 347 ARG HIS ILE GLU PHE MET ASP ARG LEU GLY SER PRO LEU SEQRES 14 C 347 LEU GLY PHE ILE PRO ASP MET GLY ILE PHE THR LYS HIS SEQRES 15 C 347 PHE PRO PRO VAL MET ALA GLU ARG LEU ILE ARG GLN GLY SEQRES 16 C 347 ALA THR PRO HIS ILE ILE GLU TYR ILE ARG GLU GLN TYR SEQRES 17 C 347 ASP ARG ARG VAL LEU ALA GLU TYR VAL VAL GLY ASP VAL SEQRES 18 C 347 ARG ASN MET GLY GLY ASN PRO VAL ASP ILE ARG ALA ALA SEQRES 19 C 347 GLU MET LEU ARG HIS ASN ASN TRP SER ASN PRO ARG ARG SEQRES 20 C 347 LEU LEU GLU HIS MET ASP ARG ILE PHE HIS VAL HIS ALA SEQRES 21 C 347 LYS PHE TYR GLU MET ASP GLU GLN ASP ARG GLU THR SER SEQRES 22 C 347 LEU GLY TYR GLU GLU VAL ILE PRO VAL LEU LYS GLU GLY SEQRES 23 C 347 GLY TYR SER GLY TYR LEU ALA SER GLU TYR GLU GLY ASN SEQRES 24 C 347 ARG HIS ILE GLN ASP ALA PHE GLU VAL ASP SER VAL GLU SEQRES 25 C 347 GLN VAL ARG ARG HIS GLN ARG MET LEU ALA ARG LEU ILE SEQRES 26 C 347 GLY GLU ARG GLU VAL ALA HIS VAL ALA GLU ASN LEU TYR SEQRES 27 C 347 PHE GLN SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 125 MET PHE ASP LYS TYR ILE VAL VAL GLU ASP SER LEU LYS SEQRES 2 D 125 ARG VAL PRO GLY GLY VAL GLN PHE GLY VAL ARG LEU PRO SEQRES 3 D 125 TYR TYR ARG GLY LEU GLY LEU SER MET VAL GLU THR MET SEQRES 4 D 125 ASP VAL THR VAL ASP GLY GLU ARG VAL PRO GLU GLU ASN SEQRES 5 D 125 LEU THR VAL THR LEU GLY ASP ARG THR VAL PRO PHE ALA SEQRES 6 D 125 ARG ARG ASP ASP GLU THR ASP THR ILE TRP ASN PHE GLY SEQRES 7 D 125 GLU ILE ALA THR VAL THR ALA ARG LEU PRO HIS GLU LEU SEQRES 8 D 125 GLY PRO GLY GLU HIS GLN VAL GLY VAL ASN PHE GLY LEU SEQRES 9 D 125 ARG ILE SER TYR PHE PRO VAL PRO MET VAL GLY GLN ASP SEQRES 10 D 125 ALA LYS THR LEU LYS LEU VAL ASP HET CD A 501 1 HET CD A 502 1 HET CD A 503 1 HET CD A 504 1 HET CD A 505 1 HET CD A 506 1 HET CD A 507 1 HET CD B 501 1 HET CD C 501 1 HET CD C 502 1 HET CD C 503 1 HET CD C 504 1 HET CD C 505 1 HET CD C 506 1 HET CD D 501 1 HETNAM CD CADMIUM ION FORMUL 5 CD 15(CD 2+) HELIX 1 AA1 PHE A 15 LEU A 21 1 7 HELIX 2 AA2 THR A 25 MET A 36 1 12 HELIX 3 AA3 LEU A 44 MET A 49 1 6 HELIX 4 AA4 ASP A 56 GLY A 71 1 16 HELIX 5 AA5 THR A 92 GLY A 111 1 20 HELIX 6 AA6 SER A 122 SER A 136 1 15 HELIX 7 AA7 HIS A 152 GLY A 166 1 15 HELIX 8 AA8 MET A 176 THR A 180 5 5 HELIX 9 AA9 PRO A 184 GLN A 194 1 11 HELIX 10 AB1 THR A 197 ARG A 211 1 15 HELIX 11 AB2 LEU A 213 MET A 224 1 12 HELIX 12 AB3 ASN A 227 MET A 236 1 10 HELIX 13 AB4 LEU A 237 HIS A 239 5 3 HELIX 14 AB5 ASN A 244 ILE A 255 5 12 HELIX 15 AB6 GLY A 275 GLY A 287 1 13 HELIX 16 AB7 GLY A 298 GLN A 303 1 6 HELIX 17 AB8 ASP A 309 GLY A 326 1 18 HELIX 18 AB9 PHE B 2 ILE B 6 5 5 HELIX 19 AC1 PRO B 49 GLU B 51 5 3 HELIX 20 AC2 ALA B 65 GLU B 70 5 6 HELIX 21 AC3 PHE C 15 LEU C 21 1 7 HELIX 22 AC4 THR C 25 SER C 35 1 11 HELIX 23 AC5 LEU C 44 MET C 49 1 6 HELIX 24 AC6 ASP C 56 GLY C 71 1 16 HELIX 25 AC7 THR C 92 GLY C 111 1 20 HELIX 26 AC8 SER C 122 SER C 136 1 15 HELIX 27 AC9 HIS C 152 GLY C 166 1 15 HELIX 28 AD1 MET C 176 THR C 180 5 5 HELIX 29 AD2 PRO C 184 GLN C 194 1 11 HELIX 30 AD3 THR C 197 ARG C 211 1 15 HELIX 31 AD4 LEU C 213 MET C 224 1 12 HELIX 32 AD5 ASN C 227 MET C 236 1 10 HELIX 33 AD6 LEU C 237 HIS C 239 5 3 HELIX 34 AD7 ASN C 244 ILE C 255 5 12 HELIX 35 AD8 GLY C 275 GLY C 286 1 12 HELIX 36 AD9 GLY C 298 GLN C 303 1 6 HELIX 37 AE1 ASP C 309 GLY C 326 1 18 HELIX 38 AE2 PHE D 2 ILE D 6 5 5 HELIX 39 AE3 PRO D 49 GLU D 51 5 3 HELIX 40 AE4 ALA D 65 GLU D 70 5 6 SHEET 1 AA1 8 LEU A 170 PRO A 174 0 SHEET 2 AA1 8 ARG A 139 ILE A 144 1 N LEU A 142 O ILE A 173 SHEET 3 AA1 8 VAL A 114 VAL A 117 1 N VAL A 117 O GLY A 141 SHEET 4 AA1 8 VAL A 73 ASP A 78 1 N HIS A 77 O ARG A 116 SHEET 5 AA1 8 GLY A 40 SER A 43 1 N ILE A 41 O VAL A 73 SHEET 6 AA1 8 LYS A 7 SER A 11 1 N VAL A 10 O GLY A 40 SHEET 7 AA1 8 TYR A 291 TYR A 296 1 O LEU A 292 N GLY A 9 SHEET 8 AA1 8 VAL A 258 PHE A 262 1 N ALA A 260 O ALA A 293 SHEET 1 AA2 5 LYS B 13 VAL B 15 0 SHEET 2 AA2 5 GLY B 18 VAL B 23 -1 O GLN B 20 N LYS B 13 SHEET 3 AA2 5 ALA B 81 ARG B 86 -1 O ALA B 85 N VAL B 19 SHEET 4 AA2 5 LEU B 53 LEU B 57 -1 N THR B 54 O THR B 84 SHEET 5 AA2 5 ARG B 60 PRO B 63 -1 O ARG B 60 N LEU B 57 SHEET 1 AA3 2 LEU B 31 GLY B 32 0 SHEET 2 AA3 2 ILE B 74 TRP B 75 -1 O TRP B 75 N LEU B 31 SHEET 1 AA4 4 GLU B 46 ARG B 47 0 SHEET 2 AA4 4 VAL B 36 VAL B 43 -1 N VAL B 43 O GLU B 46 SHEET 3 AA4 4 GLU B 95 LEU B 104 -1 O GLY B 99 N THR B 42 SHEET 4 AA4 4 MET B 113 LYS B 122 -1 O LEU B 121 N HIS B 96 SHEET 1 AA5 8 LEU C 170 PRO C 174 0 SHEET 2 AA5 8 ARG C 139 ILE C 144 1 N LEU C 142 O ILE C 173 SHEET 3 AA5 8 VAL C 114 VAL C 117 1 N ILE C 115 O GLY C 141 SHEET 4 AA5 8 VAL C 73 ASP C 78 1 N HIS C 77 O ARG C 116 SHEET 5 AA5 8 GLY C 40 SER C 43 1 N ILE C 41 O VAL C 73 SHEET 6 AA5 8 LYS C 7 SER C 11 1 N VAL C 10 O GLY C 40 SHEET 7 AA5 8 TYR C 291 TYR C 296 1 O LEU C 292 N GLY C 9 SHEET 8 AA5 8 VAL C 258 PHE C 262 1 N ALA C 260 O GLU C 295 SHEET 1 AA6 5 LYS D 13 VAL D 15 0 SHEET 2 AA6 5 GLY D 18 ARG D 24 -1 O GLN D 20 N LYS D 13 SHEET 3 AA6 5 ILE D 80 ARG D 86 -1 O ALA D 85 N VAL D 19 SHEET 4 AA6 5 LEU D 53 LEU D 57 -1 N THR D 54 O THR D 84 SHEET 5 AA6 5 ARG D 60 PRO D 63 -1 O VAL D 62 N VAL D 55 SHEET 1 AA7 2 LEU D 31 GLY D 32 0 SHEET 2 AA7 2 ILE D 74 TRP D 75 -1 O TRP D 75 N LEU D 31 SHEET 1 AA8 4 GLU D 46 VAL D 48 0 SHEET 2 AA8 4 VAL D 36 VAL D 43 -1 N VAL D 41 O VAL D 48 SHEET 3 AA8 4 GLU D 95 LEU D 104 -1 O GLY D 99 N THR D 42 SHEET 4 AA8 4 MET D 113 LYS D 122 -1 O LEU D 121 N HIS D 96 LINK OD1 ASP A 57 CD CD A 502 1555 1555 2.25 LINK OD2 ASP A 57 CD CD A 502 1555 1555 1.99 LINK OD1 ASP A 61 CD CD A 502 1555 1555 2.14 LINK OD2 ASP A 61 CD CD A 502 1555 1555 2.17 LINK NE2 HIS A 64 CD CD A 503 1555 1555 1.99 LINK ND1 HIS A 132 CD CD A 505 1555 1555 2.12 LINK OE2 GLU A 143 CD CD A 501 1555 1555 2.22 LINK NE2 HIS A 145 CD CD A 506 1555 1555 2.27 LINK OD2 ASP A 175 CD CD A 501 1555 1555 2.15 LINK NE2 HIS A 182 CD CD A 502 1555 2555 2.56 LINK NE2 HIS A 199 CD CD A 504 1555 1555 2.11 LINK OE2 GLU A 206 CD CD A 503 1555 2555 2.58 LINK NE2 HIS A 239 CD CD A 507 1555 1555 2.20 LINK ND1 HIS A 259 CD CD A 501 1555 1555 2.15 LINK OE1 GLU A 295 CD CD A 501 1555 1555 2.12 LINK OE2 GLU B 46 CD CD B 501 1555 1555 2.17 LINK NE2 HIS B 89 CD CD B 501 1555 1555 2.08 LINK OD1 ASP C 57 CD CD C 502 1555 1555 2.17 LINK OD2 ASP C 57 CD CD C 502 1555 1555 2.07 LINK OD1 ASP C 61 CD CD C 502 1555 1555 2.28 LINK OD2 ASP C 61 CD CD C 502 1555 1555 2.20 LINK NE2 HIS C 64 CD CD C 503 1555 1555 2.01 LINK ND1 HIS C 132 CD CD C 504 1555 1555 2.16 LINK OE2 GLU C 143 CD CD C 501 1555 1555 2.25 LINK NE2 HIS C 145 CD CD C 505 1555 1555 2.31 LINK OD2 ASP C 175 CD CD C 501 1555 1555 2.16 LINK NE2 HIS C 182 CD CD C 502 1555 2544 2.53 LINK OE2 GLU C 206 CD CD C 503 1555 2544 2.60 LINK NE2 HIS C 239 CD CD C 506 1555 1555 2.20 LINK ND1 HIS C 259 CD CD C 501 1555 1555 2.19 LINK OE1 GLU C 295 CD CD C 501 1555 1555 2.15 LINK OE2 GLU C 295 CD CD C 501 1555 1555 2.34 LINK OE2 GLU D 46 CD CD D 501 1555 1555 2.18 LINK NE2 HIS D 89 CD CD D 501 1555 1555 2.19 CISPEP 1 PHE A 52 PRO A 53 0 4.83 CISPEP 2 ALA A 146 PRO A 147 0 3.48 CISPEP 3 PHE C 52 PRO C 53 0 5.05 CISPEP 4 ALA C 146 PRO C 147 0 3.11 CRYST1 70.030 93.780 93.460 90.00 94.94 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014280 0.000000 0.001234 0.00000 SCALE2 0.000000 0.010663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010740 0.00000