HEADER CELL ADHESION 19-OCT-23 8QWQ TITLE MAGIC-ANGLE SPINNING NMR STRUCTURE OF OPA60 IN LIPID BILAYERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OPACITY PROTEIN OPA60 (FRAGMENT); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: OPAH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STRUCTURE FROM CYANA 3.98.15, BETA BARREL, BACTERIAL OUTER MEMBRANE, KEYWDS 2 CELL ADHESION EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR M.C.FORSTER,L.B.ANDREAS REVDAT 1 24-JUL-24 8QWQ 0 JRNL AUTH M.C.FORSTER,K.TEKWANI MOVELLAN,E.E.NAJBAUER,S.BECKER, JRNL AUTH 2 L.B.ANDREAS JRNL TITL MAGIC-ANGLE SPINNING NMR STRUCTURE OF OPA60 IN LIPID JRNL TITL 2 BILAYERS. JRNL REF J STRUCT BIOL X V. 9 00098 2024 JRNL REFN ESSN 2590-1524 JRNL PMID 39010882 JRNL DOI 10.1016/J.YJSBX.2024.100098 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133260. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 140 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM NA SODIUM PHOSPHATE, 100 REMARK 210 MM NA SODIUM CHLORIDE, 20 MM NA MAGNESIUM CHLORIDE, 33 % W/W NA REMARK 210 DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 67 % W/W [U-99% 13C; U- REMARK 210 99% 15N; U-98% 2H] PROTEIN, WATER; 20 MM NA SODIUM PHOSPHATE, REMARK 210 100 MM NA SODIUM CHLORIDE, 20 MM NA MAGNESIUM CHLORIDE, 33 % W/W REMARK 210 ACYL CHAIN DEUTERATED (D54) DIMYRISTOYL-SN-GLYCERO-3- REMARK 210 PHOSPHOCHOLINE, 67 % W/W [U-99% 13C; U-99% 15N; U-98% 2H] REMARK 210 PROTEIN, WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : (H)NH; (H)CANH; (H)(CO)CA(CO)NH; REMARK 210 (H)(CA)CB(CA)NH; (H)(CA)CB(CA) REMARK 210 (CO)NH; (H)CONH; (H)CO(CA)NH; (H) REMARK 210 N(CA)(CO)NH; HN(H)(H)NH; (H) REMARK 210 NCAHA; HC(H)(H)CH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRFAM-SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 2000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLU A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 TYR A 18 REMARK 465 ALA A 19 REMARK 465 TYR A 20 REMARK 465 GLU A 21 REMARK 465 HIS A 22 REMARK 465 ILE A 23 REMARK 465 THR A 24 REMARK 465 HIS A 25 REMARK 465 ASP A 26 REMARK 465 TYR A 27 REMARK 465 PRO A 28 REMARK 465 GLU A 29 REMARK 465 PRO A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 PRO A 33 REMARK 465 ASN A 34 REMARK 465 LYS A 35 REMARK 465 ASN A 36 REMARK 465 LYS A 37 REMARK 465 ILE A 38 REMARK 465 SER A 39 REMARK 465 THR A 40 REMARK 465 VAL A 41 REMARK 465 SER A 42 REMARK 465 ASP A 43 REMARK 465 TYR A 44 REMARK 465 PHE A 45 REMARK 465 ARG A 46 REMARK 465 ASN A 47 REMARK 465 ILE A 48 REMARK 465 ARG A 49 REMARK 465 THR A 50 REMARK 465 ARG A 51 REMARK 465 SER A 52 REMARK 465 VAL A 53 REMARK 465 HIS A 54 REMARK 465 TYR A 75 REMARK 465 ARG A 76 REMARK 465 LYS A 77 REMARK 465 TRP A 78 REMARK 465 ASN A 79 REMARK 465 ASN A 80 REMARK 465 ASN A 81 REMARK 465 LYS A 82 REMARK 465 TYR A 83 REMARK 465 SER A 84 REMARK 465 VAL A 85 REMARK 465 ASN A 86 REMARK 465 ILE A 87 REMARK 465 GLU A 88 REMARK 465 ASN A 89 REMARK 465 VAL A 90 REMARK 465 ARG A 91 REMARK 465 ILE A 92 REMARK 465 ARG A 93 REMARK 465 LYS A 94 REMARK 465 GLU A 95 REMARK 465 ASN A 96 REMARK 465 GLY A 97 REMARK 465 ILE A 98 REMARK 465 ARG A 99 REMARK 465 ILE A 100 REMARK 465 ASP A 101 REMARK 465 ARG A 102 REMARK 465 LYS A 103 REMARK 465 THR A 104 REMARK 465 GLU A 105 REMARK 465 ASN A 106 REMARK 465 GLN A 107 REMARK 465 GLU A 108 REMARK 465 ASN A 109 REMARK 465 GLY A 110 REMARK 465 THR A 111 REMARK 465 PHE A 112 REMARK 465 HIS A 113 REMARK 465 ALA A 114 REMARK 465 ARG A 146 REMARK 465 HIS A 147 REMARK 465 SER A 148 REMARK 465 ILE A 149 REMARK 465 ASP A 150 REMARK 465 SER A 151 REMARK 465 THR A 152 REMARK 465 LYS A 153 REMARK 465 LYS A 154 REMARK 465 THR A 155 REMARK 465 ILE A 156 REMARK 465 GLU A 157 REMARK 465 VAL A 158 REMARK 465 THR A 159 REMARK 465 THR A 160 REMARK 465 VAL A 161 REMARK 465 PRO A 162 REMARK 465 SER A 163 REMARK 465 ASN A 164 REMARK 465 ALA A 165 REMARK 465 PRO A 166 REMARK 465 ASN A 167 REMARK 465 GLY A 168 REMARK 465 ALA A 169 REMARK 465 VAL A 170 REMARK 465 THR A 171 REMARK 465 THR A 172 REMARK 465 TYR A 173 REMARK 465 ASN A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 PRO A 177 REMARK 465 LYS A 178 REMARK 465 THR A 179 REMARK 465 GLN A 180 REMARK 465 ASN A 181 REMARK 465 ASP A 182 REMARK 465 TYR A 183 REMARK 465 GLN A 184 REMARK 465 SER A 185 REMARK 465 ASN A 186 REMARK 465 SER A 187 REMARK 465 ILE A 188 REMARK 465 PHE A 239 REMARK 465 LYS A 240 REMARK 465 LEU A 241 REMARK 465 ALA A 242 REMARK 465 ALA A 243 REMARK 465 ALA A 244 REMARK 465 LEU A 245 REMARK 465 GLU A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 63 -41.59 -131.79 REMARK 500 1 PHE A 126 47.72 -160.07 REMARK 500 1 ASN A 129 -170.34 -177.34 REMARK 500 1 PHE A 132 96.77 60.67 REMARK 500 1 ASP A 202 109.14 -174.10 REMARK 500 1 ARG A 220 -64.78 -166.90 REMARK 500 1 ASN A 223 37.84 -154.39 REMARK 500 1 THR A 224 160.43 64.07 REMARK 500 1 ARG A 225 -56.74 -176.42 REMARK 500 2 PHE A 63 41.04 -169.71 REMARK 500 2 TRP A 66 137.63 -170.56 REMARK 500 2 PHE A 126 -41.89 -155.37 REMARK 500 2 GLN A 127 -171.99 -62.08 REMARK 500 2 LYS A 131 -75.38 69.20 REMARK 500 2 ARG A 139 115.26 -160.97 REMARK 500 2 ASP A 202 58.14 -114.02 REMARK 500 2 GLU A 222 -48.17 -144.03 REMARK 500 2 THR A 224 96.13 59.58 REMARK 500 3 PHE A 63 176.82 63.59 REMARK 500 3 TRP A 66 -169.68 63.17 REMARK 500 3 GLN A 127 105.11 63.36 REMARK 500 3 ASP A 130 161.00 63.37 REMARK 500 3 LYS A 131 -72.13 -53.14 REMARK 500 3 HIS A 144 83.53 62.29 REMARK 500 3 GLU A 222 -179.27 57.76 REMARK 500 3 ARG A 225 -72.23 -102.27 REMARK 500 4 PHE A 63 99.96 -160.68 REMARK 500 4 GLN A 127 -170.35 -179.27 REMARK 500 4 ASP A 130 81.99 -176.62 REMARK 500 4 LYS A 131 -170.60 63.30 REMARK 500 4 HIS A 144 36.75 -172.26 REMARK 500 4 ASP A 202 127.80 67.58 REMARK 500 4 ILE A 203 -80.13 -51.50 REMARK 500 4 THR A 204 50.93 -165.36 REMARK 500 4 LYS A 206 -33.61 179.96 REMARK 500 4 ARG A 220 -73.84 -92.74 REMARK 500 4 LEU A 221 -177.37 56.69 REMARK 500 5 PHE A 126 -73.06 -103.79 REMARK 500 5 LYS A 131 -72.08 -110.83 REMARK 500 5 PHE A 132 96.48 -66.96 REMARK 500 5 HIS A 144 78.73 -174.13 REMARK 500 5 ASP A 202 58.24 -93.02 REMARK 500 5 LEU A 221 -53.10 -155.29 REMARK 500 6 PHE A 63 -73.81 -73.40 REMARK 500 6 GLN A 127 92.05 55.96 REMARK 500 6 ASN A 129 41.33 -176.21 REMARK 500 6 LYS A 131 -75.39 69.25 REMARK 500 6 HIS A 144 -176.35 -176.69 REMARK 500 6 ASP A 202 72.84 -110.47 REMARK 500 6 GLU A 222 -55.08 -156.63 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34872 RELATED DB: BMRB REMARK 900 MAGIC-ANGLE SPINNING NMR STRUCTURE OF OPA60 IN LIPID BILAYERS DBREF 8QWQ A 2 239 UNP Q04884 OPAH_NEIGO 1 238 SEQADV 8QWQ MET A 1 UNP Q04884 INITIATING METHIONINE SEQADV 8QWQ LYS A 240 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ LEU A 241 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ ALA A 242 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ ALA A 243 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ ALA A 244 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ LEU A 245 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ GLU A 246 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ HIS A 247 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ HIS A 248 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ HIS A 249 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ HIS A 250 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ HIS A 251 UNP Q04884 EXPRESSION TAG SEQADV 8QWQ HIS A 252 UNP Q04884 EXPRESSION TAG SEQRES 1 A 252 MET ALA SER GLU ASP GLY GLY ARG GLY PRO TYR VAL GLN SEQRES 2 A 252 ALA ASP LEU ALA TYR ALA TYR GLU HIS ILE THR HIS ASP SEQRES 3 A 252 TYR PRO GLU PRO THR ALA PRO ASN LYS ASN LYS ILE SER SEQRES 4 A 252 THR VAL SER ASP TYR PHE ARG ASN ILE ARG THR ARG SER SEQRES 5 A 252 VAL HIS PRO ARG VAL SER VAL GLY TYR ASP PHE GLY GLY SEQRES 6 A 252 TRP ARG ILE ALA ALA ASP TYR ALA ARG TYR ARG LYS TRP SEQRES 7 A 252 ASN ASN ASN LYS TYR SER VAL ASN ILE GLU ASN VAL ARG SEQRES 8 A 252 ILE ARG LYS GLU ASN GLY ILE ARG ILE ASP ARG LYS THR SEQRES 9 A 252 GLU ASN GLN GLU ASN GLY THR PHE HIS ALA VAL SER SER SEQRES 10 A 252 LEU GLY LEU SER ALA ILE TYR ASP PHE GLN ILE ASN ASP SEQRES 11 A 252 LYS PHE LYS PRO TYR ILE GLY ALA ARG VAL ALA TYR GLY SEQRES 12 A 252 HIS VAL ARG HIS SER ILE ASP SER THR LYS LYS THR ILE SEQRES 13 A 252 GLU VAL THR THR VAL PRO SER ASN ALA PRO ASN GLY ALA SEQRES 14 A 252 VAL THR THR TYR ASN THR ASP PRO LYS THR GLN ASN ASP SEQRES 15 A 252 TYR GLN SER ASN SER ILE ARG ARG VAL GLY LEU GLY VAL SEQRES 16 A 252 ILE ALA GLY VAL GLY PHE ASP ILE THR PRO LYS LEU THR SEQRES 17 A 252 LEU ASP ALA GLY TYR ARG TYR HIS ASN TRP GLY ARG LEU SEQRES 18 A 252 GLU ASN THR ARG PHE LYS THR HIS GLU ALA SER LEU GLY SEQRES 19 A 252 VAL ARG TYR ARG PHE LYS LEU ALA ALA ALA LEU GLU HIS SEQRES 20 A 252 HIS HIS HIS HIS HIS SHEET 1 AA1 9 GLY A 9 LEU A 16 0 SHEET 2 AA1 9 ARG A 56 ASP A 62 -1 O GLY A 60 N TYR A 11 SHEET 3 AA1 9 TRP A 66 ALA A 73 -1 O ILE A 68 N TYR A 61 SHEET 4 AA1 9 SER A 116 TYR A 124 -1 O SER A 117 N ALA A 73 SHEET 5 AA1 9 LYS A 133 HIS A 144 -1 O ILE A 136 N TYR A 124 SHEET 6 AA1 9 ARG A 190 PHE A 201 -1 O GLY A 192 N ALA A 141 SHEET 7 AA1 9 THR A 208 ASN A 217 -1 O LEU A 209 N PHE A 201 SHEET 8 AA1 9 LYS A 227 TYR A 237 -1 O GLY A 234 N ASP A 210 SHEET 9 AA1 9 GLY A 9 LEU A 16 -1 N LEU A 16 O LEU A 233 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1