HEADER OXIDOREDUCTASE 26-OCT-23 8QYG TITLE CRYSTAL STRUCTURE OF NITROREDUCTASE FROM BACILLUS TEQUILENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P)H-DEPENDENT OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS TEQUILENSIS; SOURCE 3 ORGANISM_TAXID: 227866; SOURCE 4 GENE: G4P54_04090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FMN-BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.ROZEBOOM,S.RUSSO,M.W.FRAAIJE,G.J.POELARENDS REVDAT 1 08-MAY-24 8QYG 0 JRNL AUTH H.J.ROZEBOOM,S.RUSSO,M.W.FRAAIJE,G.J.POELARENDS JRNL TITL CRYSTAL STRUCTURE OF NITROREDUCTASE FROM BACILLUS JRNL TITL 2 TEQUILENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 149747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.124 REMARK 3 R VALUE (WORKING SET) : 0.123 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 582 REMARK 3 BIN FREE R VALUE : 0.2170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 659 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.030 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.215 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3976 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3681 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5390 ; 1.811 ; 1.838 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8513 ; 0.678 ; 1.787 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 5.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 24 ; 7.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;11.077 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4690 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 919 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1859 ;27.444 ; 0.957 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1859 ;27.444 ; 0.957 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2343 ;28.258 ; 1.701 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2344 ;28.252 ; 1.701 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2117 ; 5.778 ; 1.214 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2118 ; 5.777 ; 1.214 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3048 ;16.628 ; 2.102 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4991 ;17.086 ;14.240 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4792 ;14.920 ;11.330 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7657 ; 5.218 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8QYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292134306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9655 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.150 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 20% PEG3350, REMARK 280 MES BUFFER PH 6.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.23600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.30300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.13950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.30300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.23600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.13950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 670 O HOH B 709 2.10 REMARK 500 O HOH B 557 O HOH B 621 2.16 REMARK 500 O HOH B 414 O HOH B 684 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 13 CB - CA - C ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 102 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = -22.0 DEGREES REMARK 500 ASN B 13 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG B 102 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 50 47.85 -88.76 REMARK 500 SER A 194 -60.75 -102.89 REMARK 500 PRO B 50 49.11 -88.01 REMARK 500 SER B 194 -61.07 -102.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 207 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 728 DISTANCE = 5.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 463 O REMARK 620 2 HOH A 523 O 93.5 REMARK 620 3 HOH A 663 O 94.3 90.2 REMARK 620 4 HOH A 726 O 77.7 170.9 88.0 REMARK 620 5 HOH A 729 O 87.9 98.0 171.4 84.3 REMARK 620 6 HOH A 731 O 171.4 93.4 90.8 95.6 86.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 3 OD2 REMARK 620 2 HOH B 429 O 89.1 REMARK 620 3 HOH B 599 O 176.9 91.9 REMARK 620 4 HOH B 605 O 92.6 177.3 86.4 REMARK 620 5 HOH B 615 O 92.9 89.2 90.0 88.7 REMARK 620 N 1 2 3 4 DBREF1 8QYG A 1 221 UNP A0A6H0WK49_9BACI DBREF2 8QYG A A0A6H0WK49 1 221 DBREF1 8QYG B 1 221 UNP A0A6H0WK49_9BACI DBREF2 8QYG B A0A6H0WK49 1 221 SEQADV 8QYG HIS A -5 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS A -4 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS A -3 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS A -2 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS A -1 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS A 0 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG VAL A 4 UNP A0A6H0WK4 ILE 4 VARIANT SEQADV 8QYG HIS B -5 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS B -4 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS B -3 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS B -2 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS B -1 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG HIS B 0 UNP A0A6H0WK4 EXPRESSION TAG SEQADV 8QYG VAL B 4 UNP A0A6H0WK4 ILE 4 VARIANT SEQRES 1 A 227 HIS HIS HIS HIS HIS HIS MET ALA ASP VAL LYS LYS GLN SEQRES 2 A 227 ILE LEU ASP ALA TYR ASN PHE ARG HIS ALA THR LYS GLU SEQRES 3 A 227 PHE ASP PRO ASN LYS LYS VAL SER ASP SER ASP PHE GLU SEQRES 4 A 227 PHE ILE LEU GLU THR GLY ARG LEU SER PRO SER SER LEU SEQRES 5 A 227 GLY LEU GLU PRO TRP LYS PHE VAL VAL VAL GLN ASN PRO SEQRES 6 A 227 GLU PHE ARG GLU LYS LEU ARG GLU TYR THR TRP GLY ALA SEQRES 7 A 227 GLN LYS GLN LEU PRO THR ALA SER HIS PHE VAL LEU ILE SEQRES 8 A 227 LEU ALA ARG THR ALA LYS ASP ILE LYS TYR ASN ALA ASP SEQRES 9 A 227 TYR ILE LYS ARG HIS LEU LYS GLU VAL LYS GLN MET PRO SEQRES 10 A 227 GLN ASP VAL SER GLU GLY TYR ILE SER LYS THR GLU GLU SEQRES 11 A 227 PHE GLN LYS ASN ASP LEU HIS LEU LEU GLU SER ASP ARG SEQRES 12 A 227 THR LEU PHE ASP TRP ALA SER LYS GLN THR TYR ILE ALA SEQRES 13 A 227 LEU GLY ASN MET MET THR ALA ALA ALA GLN ILE GLY VAL SEQRES 14 A 227 ASP SER CYS PRO ILE GLU GLY PHE GLN TYR ASP HIS ILE SEQRES 15 A 227 HIS ARG ILE LEU GLU GLU GLU GLY LEU LEU GLU ASN GLY SEQRES 16 A 227 SER PHE ASP ILE SER VAL MET ALA ALA PHE GLY TYR ARG SEQRES 17 A 227 VAL ARG ASP PRO ARG PRO LYS THR ARG SER ALA VAL GLU SEQRES 18 A 227 ASP VAL VAL LYS TRP VAL SEQRES 1 B 227 HIS HIS HIS HIS HIS HIS MET ALA ASP VAL LYS LYS GLN SEQRES 2 B 227 ILE LEU ASP ALA TYR ASN PHE ARG HIS ALA THR LYS GLU SEQRES 3 B 227 PHE ASP PRO ASN LYS LYS VAL SER ASP SER ASP PHE GLU SEQRES 4 B 227 PHE ILE LEU GLU THR GLY ARG LEU SER PRO SER SER LEU SEQRES 5 B 227 GLY LEU GLU PRO TRP LYS PHE VAL VAL VAL GLN ASN PRO SEQRES 6 B 227 GLU PHE ARG GLU LYS LEU ARG GLU TYR THR TRP GLY ALA SEQRES 7 B 227 GLN LYS GLN LEU PRO THR ALA SER HIS PHE VAL LEU ILE SEQRES 8 B 227 LEU ALA ARG THR ALA LYS ASP ILE LYS TYR ASN ALA ASP SEQRES 9 B 227 TYR ILE LYS ARG HIS LEU LYS GLU VAL LYS GLN MET PRO SEQRES 10 B 227 GLN ASP VAL SER GLU GLY TYR ILE SER LYS THR GLU GLU SEQRES 11 B 227 PHE GLN LYS ASN ASP LEU HIS LEU LEU GLU SER ASP ARG SEQRES 12 B 227 THR LEU PHE ASP TRP ALA SER LYS GLN THR TYR ILE ALA SEQRES 13 B 227 LEU GLY ASN MET MET THR ALA ALA ALA GLN ILE GLY VAL SEQRES 14 B 227 ASP SER CYS PRO ILE GLU GLY PHE GLN TYR ASP HIS ILE SEQRES 15 B 227 HIS ARG ILE LEU GLU GLU GLU GLY LEU LEU GLU ASN GLY SEQRES 16 B 227 SER PHE ASP ILE SER VAL MET ALA ALA PHE GLY TYR ARG SEQRES 17 B 227 VAL ARG ASP PRO ARG PRO LYS THR ARG SER ALA VAL GLU SEQRES 18 B 227 ASP VAL VAL LYS TRP VAL HET FMN A 301 31 HET GOL A 302 6 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET CL A 307 1 HET MG A 308 1 HET FMN B 301 31 HET GOL B 302 6 HET MG B 303 1 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 GOL 6(C3 H8 O3) FORMUL 9 CL CL 1- FORMUL 10 MG 2(MG 2+) FORMUL 14 HOH *659(H2 O) HELIX 1 AA1 MET A 1 ARG A 15 1 15 HELIX 2 AA2 SER A 28 LEU A 41 1 14 HELIX 3 AA3 SER A 44 LEU A 48 5 5 HELIX 4 AA4 ASN A 58 GLU A 67 1 10 HELIX 5 AA5 TYR A 68 GLN A 73 5 6 HELIX 6 AA6 LYS A 74 ALA A 79 1 6 HELIX 7 AA7 THR A 89 LYS A 94 1 6 HELIX 8 AA8 ALA A 97 VAL A 107 1 11 HELIX 9 AA9 PRO A 111 ASP A 129 1 19 HELIX 10 AB1 SER A 135 ILE A 161 1 27 HELIX 11 AB2 GLN A 172 GLU A 183 1 12 HELIX 12 AB3 ALA A 213 VAL A 217 1 5 HELIX 13 AB4 HIS B -2 ARG B 15 1 18 HELIX 14 AB5 SER B 28 LEU B 41 1 14 HELIX 15 AB6 SER B 44 LEU B 48 5 5 HELIX 16 AB7 ASN B 58 GLU B 67 1 10 HELIX 17 AB8 TYR B 68 GLN B 73 5 6 HELIX 18 AB9 LYS B 74 ALA B 79 1 6 HELIX 19 AC1 THR B 89 LYS B 94 1 6 HELIX 20 AC2 ALA B 97 VAL B 107 1 11 HELIX 21 AC3 PRO B 111 ASN B 128 1 18 HELIX 22 AC4 HIS B 131 GLU B 134 5 4 HELIX 23 AC5 SER B 135 ILE B 161 1 27 HELIX 24 AC6 GLN B 172 GLU B 183 1 12 HELIX 25 AC7 ALA B 213 VAL B 217 1 5 SHEET 1 AA1 5 ASP A 164 ILE A 168 0 SHEET 2 AA1 5 PHE A 191 GLY A 200 -1 O MET A 196 N ILE A 168 SHEET 3 AA1 5 HIS A 81 ARG A 88 -1 N VAL A 83 O ALA A 197 SHEET 4 AA1 5 TRP A 51 VAL A 56 -1 N VAL A 54 O LEU A 84 SHEET 5 AA1 5 VAL B 218 VAL B 221 1 O VAL B 221 N VAL A 55 SHEET 1 AA2 5 VAL A 218 VAL A 221 0 SHEET 2 AA2 5 TRP B 51 VAL B 56 1 O VAL B 55 N LYS A 219 SHEET 3 AA2 5 HIS B 81 ARG B 88 -1 O LEU B 86 N LYS B 52 SHEET 4 AA2 5 PHE B 191 GLY B 200 -1 O ALA B 197 N VAL B 83 SHEET 5 AA2 5 ASP B 164 ILE B 168 -1 N ILE B 168 O MET B 196 LINK MG MG A 308 O HOH A 463 1555 1555 2.25 LINK MG MG A 308 O HOH A 523 1555 1555 1.93 LINK MG MG A 308 O HOH A 663 1555 1555 2.00 LINK MG MG A 308 O HOH A 726 1555 1555 2.00 LINK MG MG A 308 O HOH A 729 1555 1555 2.13 LINK MG MG A 308 O HOH A 731 1555 1555 2.23 LINK OD2 ASP B 3 MG MG B 303 1555 1555 2.05 LINK MG MG B 303 O HOH B 429 1555 1555 2.04 LINK MG MG B 303 O HOH B 599 1555 1555 2.07 LINK MG MG B 303 O HOH B 605 1555 1555 2.11 LINK MG MG B 303 O HOH B 615 1555 1555 2.14 CRYST1 52.472 84.279 100.606 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019058 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011865 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009940 0.00000