HEADER TRANSFERASE 27-OCT-23 8QZG TITLE 1,3 L,D-TRANSPEPTIDASE FROM GLUCONOBACTER OXYDANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YKUD DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: 1; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLUCONOBACTER OXYDANS; SOURCE 3 ORGANISM_TAXID: 442; SOURCE 4 GENE: EDC20_10617; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPEPTIDASE, PEPTIDOGLYCAN, GLUCONOBACTER OXYDANS, CELL WALL, KEYWDS 2 ANTIBIOTICS RESISTANCE, LIPOPROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.TER BEEK,R.P.BERNTSSON REVDAT 2 06-MAR-24 8QZG 1 JRNL REVDAT 1 08-NOV-23 8QZG 0 JRNL AUTH A.ESPAILLAT,L.ALVAREZ,G.TORRENS,J.TER BEEK,V.MIGUEL-RUANO, JRNL AUTH 2 O.IRAZOKI,F.GAGO,J.A.HERMOSO,R.P.BERNTSSON,F.CAVA JRNL TITL A DISTINCTIVE FAMILY OF L,D-TRANSPEPTIDASES CATALYZING JRNL TITL 2 L-ALA-MDAP CROSSLINKS IN ALPHA- AND BETAPROTEOBACTERIA. JRNL REF NAT COMMUN V. 15 1343 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38351082 JRNL DOI 10.1038/S41467-024-45620-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ESPAILLAT,L.ALVAREZ,G.TORRENS,J.T.BEEK,V.MIGUEL-RUANO, REMARK 1 AUTH 2 O.IRAZOKI,F.GAGO,J.A.HERMOSO,R.P.A.BERNTSSON,F.CAVA REMARK 1 TITL A DISTINCTIVE FAMILY OF L,D-TRANSPEPTIDASES CATALYZING REMARK 1 TITL 2 L-ALA-MDAP CROSSLINKS IN ALPHA AND BETAPROTEOBACTERIA REMARK 1 REF BIORXIV 2023 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2023.10.31.564931 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 29296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2216 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3229 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3289 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -2.7260 0.2294 -1.2504 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.1551 REMARK 3 T33: 0.1938 T12: -0.0063 REMARK 3 T13: -0.0014 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 0.6386 L22: 1.2125 REMARK 3 L33: 1.2519 L12: -0.1870 REMARK 3 L13: 0.0010 L23: 0.3261 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: 0.0085 S13: 0.0107 REMARK 3 S21: -0.0192 S22: 0.0173 S23: -0.0339 REMARK 3 S31: 0.0061 S32: -0.0105 S33: -0.0076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292133633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29339 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 48.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.120 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.11080 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.20RC3_4406 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE MES MONOHYDRATE (ACID) REMARK 280 PH 6.5, 30 MM MAGNESIUM CHLORIDE HEXAHYDRATE, 30 MM CALCIUM REMARK 280 CHLORIDE DIHYDRATE, 20% V/V PEG 500* MME; 10 % W/V PEG 20000 REMARK 280 (MORPHEUS A1 CONDITION), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.38900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.50950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.34400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.50950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.38900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.34400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 1 24 REMARK 465 LYS 1 25 REMARK 465 TYR 1 26 REMARK 465 LEU 1 27 REMARK 465 LEU 1 28 REMARK 465 PRO 1 29 REMARK 465 THR 1 30 REMARK 465 ALA 1 31 REMARK 465 ALA 1 32 REMARK 465 ALA 1 33 REMARK 465 GLY 1 34 REMARK 465 LEU 1 35 REMARK 465 LEU 1 36 REMARK 465 LEU 1 37 REMARK 465 LEU 1 38 REMARK 465 ALA 1 39 REMARK 465 ALA 1 40 REMARK 465 GLN 1 41 REMARK 465 PRO 1 42 REMARK 465 ALA 1 43 REMARK 465 MET 1 44 REMARK 465 ALA 1 45 REMARK 465 MET 1 46 REMARK 465 ASP 1 47 REMARK 465 ILE 1 48 REMARK 465 GLY 1 49 REMARK 465 ILE 1 50 REMARK 465 ASN 1 51 REMARK 465 SER 1 52 REMARK 465 ALA 1 53 REMARK 465 GLU 1 201 REMARK 465 GLY 1 202 REMARK 465 THR 1 203 REMARK 465 LYS 1 204 REMARK 465 ASN 1 205 REMARK 465 LYS 1 206 REMARK 465 TYR 1 207 REMARK 465 GLY 1 208 REMARK 465 ILE 1 209 REMARK 465 ARG 1 210 REMARK 465 GLY 1 211 REMARK 465 ILE 1 212 REMARK 465 GLY 1 213 REMARK 465 ALA 1 214 REMARK 465 LYS 1 215 REMARK 465 LYS 1 332 REMARK 465 ARG 1 333 REMARK 465 PRO 1 334 REMARK 465 LEU 1 335 REMARK 465 PRO 1 336 REMARK 465 ALA 1 337 REMARK 465 ALA 1 338 REMARK 465 LYS 1 339 REMARK 465 LEU 1 340 REMARK 465 ALA 1 341 REMARK 465 ALA 1 342 REMARK 465 ALA 1 343 REMARK 465 LEU 1 344 REMARK 465 GLU 1 345 REMARK 465 HIS 1 346 REMARK 465 HIS 1 347 REMARK 465 HIS 1 348 REMARK 465 HIS 1 349 REMARK 465 HIS 1 350 REMARK 465 HIS 1 351 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA 1 73 108.96 -59.56 REMARK 500 ILE 1 149 -68.27 -109.44 REMARK 500 THR 1 173 -169.38 -106.79 REMARK 500 HIS 1 235 92.94 66.86 REMARK 500 ALA 1 260 -0.44 -153.46 REMARK 500 ASP 1 311 3.12 -150.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH 1 633 DISTANCE = 7.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA 1 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR 1 173 OG1 REMARK 620 2 GLY 1 174 O 91.9 REMARK 620 3 HOH 1 525 O 92.9 94.4 REMARK 620 N 1 2 DBREF1 8QZG 1 53 336 UNP A0A4R4A0U0_GLUOY DBREF2 8QZG 1 A0A4R4A0U0 53 336 SEQADV 8QZG MET 1 24 UNP A0A4R4A0U INITIATING METHIONINE SEQADV 8QZG LYS 1 25 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG TYR 1 26 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 27 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 28 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG PRO 1 29 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG THR 1 30 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 31 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 32 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 33 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG GLY 1 34 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 35 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 36 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 37 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 38 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 39 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 40 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG GLN 1 41 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG PRO 1 42 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 43 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG MET 1 44 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 45 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG MET 1 46 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ASP 1 47 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ILE 1 48 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG GLY 1 49 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ILE 1 50 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ASN 1 51 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG SER 1 52 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 337 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 338 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LYS 1 339 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 340 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 341 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 342 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG ALA 1 343 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG LEU 1 344 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG GLU 1 345 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG HIS 1 346 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG HIS 1 347 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG HIS 1 348 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG HIS 1 349 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG HIS 1 350 UNP A0A4R4A0U EXPRESSION TAG SEQADV 8QZG HIS 1 351 UNP A0A4R4A0U EXPRESSION TAG SEQRES 1 1 328 MET LYS TYR LEU LEU PRO THR ALA ALA ALA GLY LEU LEU SEQRES 2 1 328 LEU LEU ALA ALA GLN PRO ALA MET ALA MET ASP ILE GLY SEQRES 3 1 328 ILE ASN SER ALA SER VAL PRO PRO PRO ALA SER ASN PRO SEQRES 4 1 328 PRO THR ASP THR PRO PRO GLN PRO ASP LEU ALA PRO PRO SEQRES 5 1 328 PRO ILE ASP ILE PRO ASP LEU PRO VAL VAL SER ASP GLU SEQRES 6 1 328 VAL ALA ARG GLU GLU ALA SER ARG LEU ALA VAL LEU MET SEQRES 7 1 328 LYS HIS ASN VAL LYS GLY PHE SER THR TYR THR PRO GLU SEQRES 8 1 328 ARG ARG LYS ALA PHE LEU THR LEU ALA LYS ASP ALA VAL SEQRES 9 1 328 THR GLN ALA ASP MET PRO VAL SER ARG PRO GLN LEU VAL SEQRES 10 1 328 MET VAL VAL ASP ARG ASN GLU LYS ILE GLN HIS LEU ASP SEQRES 11 1 328 TYR VAL LEU ALA LEU PRO ASP ALA PRO TRP GLU SER LEU SEQRES 12 1 328 GLY GLY THR PRO VAL SER THR GLY THR THR GLY ARG LYS SEQRES 13 1 328 TYR TYR TYR ILE THR PRO THR GLY VAL PHE GLN ASN THR SEQRES 14 1 328 ALA ASP ARG LEU GLY TYR ARG ALA GLU GLY THR LYS ASN SEQRES 15 1 328 LYS TYR GLY ILE ARG GLY ILE GLY ALA LYS GLY SER ARG SEQRES 16 1 328 VAL TRP ASP MET GLY TRP GLN THR ALA MET LYS GLY TRP SEQRES 17 1 328 LEU PRO ARG HIS GLU THR GLY GLN ILE ARG LEU GLU ILE SEQRES 18 1 328 HIS ALA THR ASP PRO GLN PHE LEU GLU TRP ARG LEU GLY SEQRES 19 1 328 HIS PRO ALA SER GLU GLY CYS ILE ARG ILE PRO ALA THR SEQRES 20 1 328 MET ASN LYS PHE MET ASP HIS TYR GLY LEU ILE ASP ALA SEQRES 21 1 328 LEU TYR GLU GLN ALA ALA SER TYR ASP PRO ARG PHE GLN SEQRES 22 1 328 ALA LEU LEU PRO LYS ASP ARG GLN PRO THR GLN ILE ALA SEQRES 23 1 328 GLY ASP LEU VAL VAL VAL ILE ASP SER GLY PRO LEU THR SEQRES 24 1 328 GLU PRO LYS ILE ASP PRO ILE ALA ASP LYS ARG PRO LEU SEQRES 25 1 328 PRO ALA ALA LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 26 1 328 HIS HIS HIS HET CL 1 401 1 HET NA 1 402 1 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CL CL 1- FORMUL 3 NA NA 1+ FORMUL 4 HOH *133(H2 O) HELIX 1 AA1 GLN 1 69 ALA 1 73 5 5 HELIX 2 AA2 PRO 1 75 ILE 1 79 5 5 HELIX 3 AA3 SER 1 86 VAL 1 105 1 20 HELIX 4 AA4 THR 1 112 ALA 1 130 1 19 HELIX 5 AA5 LEU 1 252 LEU 1 256 5 5 HELIX 6 AA6 PRO 1 268 GLY 1 279 1 12 HELIX 7 AA7 ASP 1 282 SER 1 290 1 9 HELIX 8 AA8 ASP 1 292 LEU 1 299 1 8 SHEET 1 AA1 5 GLU 1 164 GLY 1 167 0 SHEET 2 AA1 5 HIS 1 151 ALA 1 157 -1 N LEU 1 156 O GLU 1 164 SHEET 3 AA1 5 GLN 1 138 ASP 1 144 -1 N GLN 1 138 O ALA 1 157 SHEET 4 AA1 5 LEU 1 312 ILE 1 316 1 O VAL 1 314 N VAL 1 143 SHEET 5 AA1 5 GLY 1 187 GLN 1 190 -1 N PHE 1 189 O VAL 1 313 SHEET 1 AA2 4 TYR 1 198 ARG 1 199 0 SHEET 2 AA2 4 ARG 1 218 MET 1 228 -1 O VAL 1 219 N TYR 1 198 SHEET 3 AA2 4 THR 1 237 ALA 1 246 -1 O LEU 1 242 N MET 1 222 SHEET 4 AA2 4 ILE 1 265 ILE 1 267 1 O ILE 1 265 N HIS 1 245 LINK OG1 THR 1 173 NA NA 1 402 1555 1555 2.94 LINK O GLY 1 174 NA NA 1 402 1555 1555 2.72 LINK NA NA 1 402 O HOH 1 525 1555 1555 2.74 CRYST1 52.778 56.688 93.019 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010750 0.00000