HEADER TRANSFERASE 27-OCT-23 8QZH TITLE CRYSTAL STRUCTURE OF APO-PPTT FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4'-PHOSPHOPANTETHEINYL TRANSFERASE PPTT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PPTT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.GAVALDA,C.CARIVENC,L.MOUREY,J.D.PEDELACQ REVDAT 1 19-JUN-24 8QZH 0 JRNL AUTH S.GAVALDA,A.FAILLE,S.FIOCCOLA,M.C.NGUYEN,C.CARIVENC, JRNL AUTH 2 K.ROTTIER,Y.RUFIN,S.SAITTA,G.CZAPLICKI,C.GUILHOT,C.CHALUT, JRNL AUTH 3 M.BRUT,L.MOUREY,J.D.PEDELACQ JRNL TITL CATALYTIC CYCLE OF TYPE II 4'-PHOSPHOPANTETHEINYL JRNL TITL 2 TRANSFERASES JRNL REF ACS CATALYSIS V. 14 8561 2024 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.3C06249 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 23969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.390 REMARK 3 FREE R VALUE TEST SET COUNT : 2076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9800 - 4.1900 1.00 3018 140 0.1681 0.1970 REMARK 3 2 4.1900 - 3.3300 1.00 3042 140 0.1638 0.2028 REMARK 3 3 3.3300 - 2.9100 1.00 3044 144 0.1898 0.2432 REMARK 3 4 2.9100 - 2.6400 1.00 3029 142 0.2043 0.2134 REMARK 3 5 2.6400 - 2.4500 1.00 3041 127 0.2079 0.2333 REMARK 3 6 2.4500 - 2.3100 1.00 2996 140 0.2169 0.2532 REMARK 3 7 2.3100 - 2.1900 1.00 3071 140 0.2211 0.2487 REMARK 3 8 2.1900 - 2.1000 1.00 3020 138 0.2331 0.2287 REMARK 3 9 2.1000 - 2.0200 1.00 3038 143 0.2416 0.3036 REMARK 3 10 2.0200 - 1.9500 1.00 3068 140 0.2546 0.2637 REMARK 3 11 1.9500 - 1.8900 1.00 3054 142 0.2807 0.2578 REMARK 3 12 1.8900 - 1.8300 1.00 3016 134 0.2962 0.3329 REMARK 3 13 1.8300 - 1.7800 1.00 2987 134 0.3084 0.3702 REMARK 3 14 1.7800 - 1.7400 0.99 3020 139 0.3407 0.2997 REMARK 3 15 1.7400 - 1.7000 0.92 2769 133 0.3569 0.3602 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.912 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1878 REMARK 3 ANGLE : 0.716 2567 REMARK 3 CHIRALITY : 0.045 291 REMARK 3 PLANARITY : 0.004 334 REMARK 3 DIHEDRAL : 16.419 264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -8 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0438 -2.5934 4.8618 REMARK 3 T TENSOR REMARK 3 T11: 0.3034 T22: 0.3089 REMARK 3 T33: 0.3303 T12: 0.0060 REMARK 3 T13: -0.0150 T23: 0.0409 REMARK 3 L TENSOR REMARK 3 L11: 0.2955 L22: 0.3128 REMARK 3 L33: 0.5150 L12: -0.1488 REMARK 3 L13: -0.3553 L23: -0.0132 REMARK 3 S TENSOR REMARK 3 S11: -0.0556 S12: 0.0718 S13: -0.2843 REMARK 3 S21: 0.1638 S22: 0.1819 S23: -0.1376 REMARK 3 S31: -0.2705 S32: -0.0843 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5757 -1.6541 -9.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.2721 T22: 0.3966 REMARK 3 T33: 0.2910 T12: -0.0397 REMARK 3 T13: 0.0090 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.7398 L22: 0.5437 REMARK 3 L33: 1.1378 L12: -0.6186 REMARK 3 L13: 0.4388 L23: -0.3931 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.0300 S13: 0.1236 REMARK 3 S21: -0.0111 S22: -0.0109 S23: -0.0503 REMARK 3 S31: -0.0187 S32: 0.2803 S33: -0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5133 -1.7998 -11.3553 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.4731 REMARK 3 T33: 0.2936 T12: -0.0044 REMARK 3 T13: 0.0085 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 0.8060 L22: 0.3090 REMARK 3 L33: 1.2042 L12: 0.0640 REMARK 3 L13: -0.2479 L23: 0.5831 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: -0.1060 S13: 0.1132 REMARK 3 S21: 0.2522 S22: -0.1023 S23: -0.1615 REMARK 3 S31: -0.1994 S32: 0.4633 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8310 -4.8325 -22.0746 REMARK 3 T TENSOR REMARK 3 T11: 0.3539 T22: 0.3698 REMARK 3 T33: 0.3192 T12: 0.0522 REMARK 3 T13: -0.0528 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.3378 L22: 0.2544 REMARK 3 L33: 0.2803 L12: 0.0383 REMARK 3 L13: -0.3033 L23: 0.0519 REMARK 3 S TENSOR REMARK 3 S11: 0.1387 S12: 0.1166 S13: 0.3859 REMARK 3 S21: -0.6923 S22: -0.1191 S23: 0.0390 REMARK 3 S31: 0.2766 S32: -0.0717 S33: -0.0003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0144 3.9826 -13.3729 REMARK 3 T TENSOR REMARK 3 T11: 0.2086 T22: 0.2174 REMARK 3 T33: 0.2246 T12: -0.0253 REMARK 3 T13: 0.0078 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.3363 L22: 1.0131 REMARK 3 L33: 1.6026 L12: -0.5676 REMARK 3 L13: -0.1196 L23: 0.1532 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: -0.0439 S13: 0.0181 REMARK 3 S21: -0.0368 S22: -0.0535 S23: 0.0425 REMARK 3 S31: -0.0743 S32: 0.0033 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4882 1.4958 -25.6928 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.2935 REMARK 3 T33: 0.2656 T12: 0.0177 REMARK 3 T13: 0.0253 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.2246 L22: 0.2109 REMARK 3 L33: 0.3315 L12: 0.2150 REMARK 3 L13: -0.0414 L23: 0.0438 REMARK 3 S TENSOR REMARK 3 S11: 0.2602 S12: 0.3713 S13: -0.0867 REMARK 3 S21: -0.3659 S22: -0.1954 S23: 0.0938 REMARK 3 S31: 0.1293 S32: -0.1667 S33: 0.0012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7529 4.1272 -9.6267 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.3194 REMARK 3 T33: 0.2910 T12: 0.0398 REMARK 3 T13: 0.0399 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.0777 L22: 0.3981 REMARK 3 L33: 0.0748 L12: 0.1862 REMARK 3 L13: 0.0006 L23: 0.0526 REMARK 3 S TENSOR REMARK 3 S11: 0.2037 S12: 0.0240 S13: -0.0092 REMARK 3 S21: 0.0660 S22: 0.1406 S23: 0.2124 REMARK 3 S31: 0.3019 S32: -0.2798 S33: -0.0015 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7669 1.6889 -10.9549 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.2668 REMARK 3 T33: 0.2717 T12: 0.0165 REMARK 3 T13: 0.0053 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.7368 L22: 0.6803 REMARK 3 L33: 0.4596 L12: -0.3247 REMARK 3 L13: -0.2747 L23: -0.3651 REMARK 3 S TENSOR REMARK 3 S11: 0.1271 S12: -0.0059 S13: -0.0990 REMARK 3 S21: 0.1596 S22: -0.0615 S23: 0.2385 REMARK 3 S31: 0.2902 S32: -0.3708 S33: 0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7443 -8.6236 -18.6546 REMARK 3 T TENSOR REMARK 3 T11: 0.3399 T22: 0.2447 REMARK 3 T33: 0.2956 T12: 0.0060 REMARK 3 T13: -0.0211 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.1609 L22: 0.1292 REMARK 3 L33: 0.1551 L12: 0.1542 REMARK 3 L13: 0.1134 L23: 0.1741 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: -0.0232 S13: -0.1250 REMARK 3 S21: 0.4312 S22: 0.0844 S23: 0.0653 REMARK 3 S31: 0.7548 S32: 0.0103 S33: 0.0003 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0447 3.7233 -4.7637 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.2238 REMARK 3 T33: 0.2698 T12: 0.0084 REMARK 3 T13: -0.0070 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 0.2875 L22: 0.3379 REMARK 3 L33: 0.2874 L12: -0.1077 REMARK 3 L13: -0.1303 L23: -0.1720 REMARK 3 S TENSOR REMARK 3 S11: 0.1252 S12: -0.0199 S13: -0.0595 REMARK 3 S21: 0.4817 S22: 0.0753 S23: -0.1764 REMARK 3 S31: 0.2082 S32: 0.2264 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8QZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292131045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23986 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M MG ACETATE 0.1M NA ACETATE, PH 4.6, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.55333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.10667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.83000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 151.38333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.27667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 116 CD GLU A 116 OE2 -0.067 REMARK 500 GLU A 174 CD GLU A 174 OE2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 190 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD1 REMARK 620 2 ACT A 301 OXT 93.8 REMARK 620 3 HOH A 421 O 87.7 87.6 REMARK 620 4 HOH A 424 O 87.0 175.9 96.5 REMARK 620 5 HOH A 425 O 98.8 81.8 167.9 94.1 REMARK 620 6 HOH A 520 O 170.6 94.5 88.2 85.0 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 139 O REMARK 620 2 HOH A 452 O 77.9 REMARK 620 3 HOH A 463 O 169.9 92.4 REMARK 620 4 HOH A 481 O 83.0 82.1 98.4 REMARK 620 5 HOH A 497 O 85.4 94.3 92.9 168.3 REMARK 620 6 HOH A 515 O 96.9 172.4 92.6 102.9 79.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 226 O REMARK 620 2 ACT A 302 O 90.1 REMARK 620 3 HOH A 418 O 177.3 92.5 REMARK 620 4 HOH A 437 O 81.8 84.4 99.0 REMARK 620 5 HOH A 473 O 86.7 174.0 90.8 90.1 REMARK 620 6 HOH A 487 O 94.3 98.5 84.7 175.2 86.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4U89 RELATED DB: PDB DBREF 8QZH A 1 227 UNP O33336 PPTT_MYCTU 1 227 SEQADV 8QZH MET A -19 UNP O33336 INITIATING METHIONINE SEQADV 8QZH GLY A -18 UNP O33336 EXPRESSION TAG SEQADV 8QZH SER A -17 UNP O33336 EXPRESSION TAG SEQADV 8QZH SER A -16 UNP O33336 EXPRESSION TAG SEQADV 8QZH HIS A -15 UNP O33336 EXPRESSION TAG SEQADV 8QZH HIS A -14 UNP O33336 EXPRESSION TAG SEQADV 8QZH HIS A -13 UNP O33336 EXPRESSION TAG SEQADV 8QZH HIS A -12 UNP O33336 EXPRESSION TAG SEQADV 8QZH HIS A -11 UNP O33336 EXPRESSION TAG SEQADV 8QZH HIS A -10 UNP O33336 EXPRESSION TAG SEQADV 8QZH SER A -9 UNP O33336 EXPRESSION TAG SEQADV 8QZH SER A -8 UNP O33336 EXPRESSION TAG SEQADV 8QZH GLY A -7 UNP O33336 EXPRESSION TAG SEQADV 8QZH LEU A -6 UNP O33336 EXPRESSION TAG SEQADV 8QZH VAL A -5 UNP O33336 EXPRESSION TAG SEQADV 8QZH PRO A -4 UNP O33336 EXPRESSION TAG SEQADV 8QZH ARG A -3 UNP O33336 EXPRESSION TAG SEQADV 8QZH GLY A -2 UNP O33336 EXPRESSION TAG SEQADV 8QZH SER A -1 UNP O33336 EXPRESSION TAG SEQADV 8QZH HIS A 0 UNP O33336 EXPRESSION TAG SEQRES 1 A 247 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 247 LEU VAL PRO ARG GLY SER HIS MET THR VAL GLY THR LEU SEQRES 3 A 247 VAL ALA SER VAL LEU PRO ALA THR VAL PHE GLU ASP LEU SEQRES 4 A 247 ALA TYR ALA GLU LEU TYR SER ASP PRO PRO GLY LEU THR SEQRES 5 A 247 PRO LEU PRO GLU GLU ALA PRO LEU ILE ALA ARG SER VAL SEQRES 6 A 247 ALA LYS ARG ARG ASN GLU PHE ILE THR VAL ARG HIS CYS SEQRES 7 A 247 ALA ARG ILE ALA LEU ASP GLN LEU GLY VAL PRO PRO ALA SEQRES 8 A 247 PRO ILE LEU LYS GLY ASP LYS GLY GLU PRO CYS TRP PRO SEQRES 9 A 247 ASP GLY MET VAL GLY SER LEU THR HIS CYS ALA GLY TYR SEQRES 10 A 247 ARG GLY ALA VAL VAL GLY ARG ARG ASP ALA VAL ARG SER SEQRES 11 A 247 VAL GLY ILE ASP ALA GLU PRO HIS ASP VAL LEU PRO ASN SEQRES 12 A 247 GLY VAL LEU ASP ALA ILE SER LEU PRO ALA GLU ARG ALA SEQRES 13 A 247 ASP MET PRO ARG THR MET PRO ALA ALA LEU HIS TRP ASP SEQRES 14 A 247 ARG ILE LEU PHE CYS ALA LYS GLU ALA THR TYR LYS ALA SEQRES 15 A 247 TRP PHE PRO LEU THR LYS ARG TRP LEU GLY PHE GLU ASP SEQRES 16 A 247 ALA HIS ILE THR PHE GLU THR ASP SER THR GLY TRP THR SEQRES 17 A 247 GLY ARG PHE VAL SER ARG ILE LEU ILE ASP GLY SER THR SEQRES 18 A 247 LEU SER GLY PRO PRO LEU THR THR LEU ARG GLY ARG TRP SEQRES 19 A 247 SER VAL GLU ARG GLY LEU VAL LEU THR ALA ILE VAL LEU HET ACT A 301 7 HET ACT A 302 7 HET ACT A 303 7 HET MG A 304 1 HET MG A 305 1 HET MG A 306 1 HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION FORMUL 2 ACT 3(C2 H3 O2 1-) FORMUL 5 MG 3(MG 2+) FORMUL 8 HOH *138(H2 O) HELIX 1 AA1 THR A 5 LEU A 11 5 7 HELIX 2 AA2 PRO A 12 PHE A 16 5 5 HELIX 3 AA3 GLU A 37 ALA A 42 5 6 HELIX 4 AA4 VAL A 45 LEU A 66 1 22 HELIX 5 AA5 GLY A 124 SER A 130 1 7 HELIX 6 AA6 LEU A 131 MET A 142 1 12 HELIX 7 AA7 HIS A 147 LYS A 168 1 22 HELIX 8 AA8 GLY A 172 GLU A 174 5 3 SHEET 1 AA1 3 LEU A 19 LEU A 24 0 SHEET 2 AA1 3 TYR A 97 ARG A 104 -1 O VAL A 102 N ALA A 20 SHEET 3 AA1 3 MET A 87 CYS A 94 -1 N VAL A 88 O GLY A 103 SHEET 1 AA2 2 LEU A 74 LYS A 75 0 SHEET 2 AA2 2 PRO A 81 CYS A 82 -1 O CYS A 82 N LEU A 74 SHEET 1 AA3 5 SER A 110 PRO A 117 0 SHEET 2 AA3 5 LEU A 220 LEU A 227 -1 O VAL A 221 N GLU A 116 SHEET 3 AA3 5 THR A 209 GLU A 217 -1 N SER A 215 O LEU A 222 SHEET 4 AA3 5 THR A 188 ILE A 195 -1 N SER A 193 O LEU A 210 SHEET 5 AA3 5 ALA A 176 THR A 182 -1 N HIS A 177 O ARG A 194 LINK OD1 ASP A 114 MG MG A 304 1555 1555 2.19 LINK O PRO A 139 MG MG A 306 1555 1555 2.15 LINK O VAL A 226 MG MG A 305 1555 1555 2.02 LINK OXT ACT A 301 MG MG A 304 1555 1555 2.12 LINK O ACT A 302 MG MG A 305 1555 1555 2.27 LINK MG MG A 304 O HOH A 421 1555 1555 2.18 LINK MG MG A 304 O HOH A 424 1555 1555 2.21 LINK MG MG A 304 O HOH A 425 1555 1555 2.21 LINK MG MG A 304 O HOH A 520 1555 1555 2.23 LINK MG MG A 305 O HOH A 418 1555 1555 2.26 LINK MG MG A 305 O HOH A 437 1555 1555 2.14 LINK MG MG A 305 O HOH A 473 1555 1555 2.16 LINK MG MG A 305 O HOH A 487 1555 1555 1.99 LINK MG MG A 306 O HOH A 452 1555 1555 2.27 LINK MG MG A 306 O HOH A 463 1555 6565 1.89 LINK MG MG A 306 O HOH A 481 1555 1555 2.22 LINK MG MG A 306 O HOH A 497 1555 1555 2.27 LINK MG MG A 306 O HOH A 515 1555 1555 2.28 CRYST1 46.169 46.169 181.660 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021660 0.012505 0.000000 0.00000 SCALE2 0.000000 0.025010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005505 0.00000