HEADER TRANSFERASE 31-OCT-23 8R0I TITLE PSEUDOMONAS AERUGINOSA FABF C164A IN COMPLEX WITH 3-AMINO-N-(1,5- TITLE 2 DIMETHYL-3-OXO-2-PHENYL-2,3-DIHYDRO-1H-PYRAZOL-4-YL)BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.179; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: FABF1, PA2965; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PROTEIN-LIGAND COMPLEX, FABF, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.YADRYKHINSKY,R.BRENK REVDAT 2 08-MAY-24 8R0I 1 JRNL REVDAT 1 06-MAR-24 8R0I 0 JRNL AUTH X.JALENCAS,H.BERG,L.O.ESPELAND,S.SREERAMULU,F.KINNEN, JRNL AUTH 2 C.RICHTER,C.GEORGIOU,V.YADRYKHINSKY,E.SPECKER,K.JAUDZEMS, JRNL AUTH 3 T.MILETIC,R.HARMEL,P.GRIBBON,H.SCHWALBE,R.BRENK, JRNL AUTH 4 A.JIRGENSONS,A.ZALIANI,J.MESTRES JRNL TITL DESIGN, QUALITY AND VALIDATION OF THE EU-OPENSCREEN FRAGMENT JRNL TITL 2 LIBRARY POISED TO A HIGH-THROUGHPUT SCREENING COLLECTION. JRNL REF RSC MED CHEM V. 15 1176 2024 JRNL REFN ESSN 2632-8682 JRNL PMID 38665834 JRNL DOI 10.1039/D3MD00724C REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 115789 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.972 REMARK 3 FREE R VALUE TEST SET COUNT : 5757 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7991 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3870 REMARK 3 BIN FREE R VALUE SET COUNT : 365 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.47100 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : 0.85100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6328 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5959 ; 0.003 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8558 ; 1.868 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13665 ; 0.734 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 843 ; 6.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;14.619 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 992 ;15.650 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7796 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1528 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1254 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 214 ; 0.127 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3136 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 284 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3321 ; 3.723 ; 2.933 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3322 ; 3.724 ; 2.933 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4157 ; 4.476 ; 5.258 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4158 ; 4.476 ; 5.259 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3007 ; 4.764 ; 3.457 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3008 ; 4.763 ; 3.458 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4393 ; 6.570 ; 6.125 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4394 ; 6.569 ; 6.125 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 412 NULL REMARK 3 1 A 3 A 412 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8R0I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 3.12.0 REMARK 200 DATA SCALING SOFTWARE : DIALS 3.12.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 72.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.24M AMMONIUM FORMATE AND 35% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.65750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.65750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.50900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.83350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.50900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.83350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.65750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.50900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.83350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.65750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.50900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.83350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 101.01800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -70.65750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 751 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 720 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASP A 414 REMARK 465 GLY B -4 REMARK 465 HIS B -3 REMARK 465 MET B -2 REMARK 465 ALA B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 414 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 3 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU A 60 CG REMARK 480 LYS A 66 CD CE NZ REMARK 480 ARG A 69 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 70 CE REMARK 480 ARG A 87 NE CZ NH1 NH2 REMARK 480 LEU A 91 CD1 REMARK 480 GLU A 92 CD REMARK 480 ARG A 129 CD NE CZ NH1 NH2 REMARK 480 GLU A 374 CD OE1 OE2 REMARK 480 GLU A 384 CD OE1 OE2 REMARK 480 LYS A 389 CE NZ REMARK 480 ALA A 413 CB REMARK 480 ARG B 3 CG CD NE CZ NH1 NH2 REMARK 480 ASP B 42 OD2 REMARK 480 ARG B 49 NH2 REMARK 480 LYS B 66 CB CG CD CE NZ REMARK 480 GLU B 67 CD OE2 REMARK 480 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 70 CE REMARK 480 GLU B 92 CD OE1 OE2 REMARK 480 ILE B 109 CG2 CD1 REMARK 480 GLU B 116 CG REMARK 480 ARG B 128 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG B 129 CB CG CD NE CZ REMARK 480 ARG B 207 CZ NH1 NH2 REMARK 480 GLU B 245 CG REMARK 480 GLU B 275 CG CD REMARK 480 LYS B 285 CE NZ REMARK 480 GLU B 374 CD OE2 REMARK 480 LYS B 389 CD CE NZ REMARK 480 ALA B 413 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR B 162 HG1 THR B 166 1.19 REMARK 500 H THR A 162 HG1 THR A 166 1.21 REMARK 500 HG SER A 331 HH11 ARG A 388 1.28 REMARK 500 H PHE A 412 O HOH A 603 1.54 REMARK 500 O HOH A 628 O HOH A 705 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR A 77 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 282 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 163 -131.54 53.66 REMARK 500 ASP A 228 31.16 -143.80 REMARK 500 PHE A 268 -62.77 -123.76 REMARK 500 SER A 307 29.07 83.64 REMARK 500 LEU A 343 -119.13 59.80 REMARK 500 HIS A 383 -51.37 85.08 REMARK 500 ALA B 163 -131.03 49.62 REMARK 500 ASP B 228 29.16 -143.51 REMARK 500 PHE B 268 -66.08 -126.79 REMARK 500 SER B 307 26.19 84.65 REMARK 500 LEU B 343 -119.47 57.66 REMARK 500 HIS B 383 -45.62 77.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 87 0.08 SIDE CHAIN REMARK 500 ARG A 128 0.08 SIDE CHAIN REMARK 500 ARG A 225 0.07 SIDE CHAIN REMARK 500 ARG A 289 0.14 SIDE CHAIN REMARK 500 ARG B 49 0.12 SIDE CHAIN REMARK 500 ARG B 87 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8PFZ RELATED DB: PDB REMARK 900 RELATED ID: 8PD1 RELATED DB: PDB DBREF 8R0I A 1 414 UNP G3XDA2 G3XDA2_PSEAE 1 414 DBREF 8R0I B 1 414 UNP G3XDA2 G3XDA2_PSEAE 1 414 SEQADV 8R0I GLY A -4 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I HIS A -3 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I MET A -2 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I ALA A -1 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I SER A 0 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I ALA A 164 UNP G3XDA2 CYS 164 ENGINEERED MUTATION SEQADV 8R0I GLY B -4 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I HIS B -3 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I MET B -2 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I ALA B -1 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I SER B 0 UNP G3XDA2 EXPRESSION TAG SEQADV 8R0I ALA B 164 UNP G3XDA2 CYS 164 ENGINEERED MUTATION SEQRES 1 A 419 GLY HIS MET ALA SER MET SER ARG ARG ARG VAL VAL ILE SEQRES 2 A 419 THR GLY MET GLY MET LEU SER PRO LEU GLY LEU ASP VAL SEQRES 3 A 419 PRO SER SER TRP GLU GLY ILE LEU ALA GLY ARG SER GLY SEQRES 4 A 419 ILE ALA PRO ILE GLU HIS MET ASP LEU SER ALA TYR SER SEQRES 5 A 419 THR ARG PHE GLY GLY SER VAL LYS GLY PHE ASN VAL GLU SEQRES 6 A 419 GLU TYR LEU SER ALA LYS GLU ALA ARG LYS LEU ASP LEU SEQRES 7 A 419 PHE ILE GLN TYR GLY LEU ALA ALA SER PHE GLN ALA VAL SEQRES 8 A 419 ARG ASP SER GLY LEU GLU VAL THR ASP ALA ASN ARG GLU SEQRES 9 A 419 ARG ILE GLY VAL SER MET GLY SER GLY ILE GLY GLY LEU SEQRES 10 A 419 THR ASN ILE GLU ASN ASN CYS ARG SER LEU PHE GLU GLN SEQRES 11 A 419 GLY PRO ARG ARG ILE SER PRO PHE PHE VAL PRO GLY SER SEQRES 12 A 419 ILE ILE ASN MET VAL SER GLY PHE LEU SER ILE HIS LEU SEQRES 13 A 419 GLY LEU GLN GLY PRO ASN TYR ALA LEU THR THR ALA ALA SEQRES 14 A 419 THR THR GLY THR HIS SER ILE GLY MET ALA ALA ARG ASN SEQRES 15 A 419 ILE ALA TYR GLY GLU ALA ASP VAL MET VAL ALA GLY GLY SEQRES 16 A 419 SER GLU MET ALA ALA CYS GLY LEU GLY LEU GLY GLY PHE SEQRES 17 A 419 GLY ALA ALA ARG ALA LEU SER THR ARG ASN ASP GLU PRO SEQRES 18 A 419 THR ARG ALA SER ARG PRO TRP ASP ARG ASP ARG ASP GLY SEQRES 19 A 419 PHE VAL LEU SER ASP GLY SER GLY ALA LEU VAL LEU GLU SEQRES 20 A 419 GLU LEU GLU HIS ALA ARG ALA ARG GLY ALA ARG ILE TYR SEQRES 21 A 419 ALA GLU LEU VAL GLY PHE GLY MET SER GLY ASP ALA PHE SEQRES 22 A 419 HIS MET THR ALA PRO PRO GLU ASP GLY ALA GLY ALA ALA SEQRES 23 A 419 ARG CYS MET LYS ASN ALA LEU ARG ASP ALA GLY LEU ASP SEQRES 24 A 419 PRO ARG GLN VAL ASP TYR ILE ASN ALA HIS GLY THR SER SEQRES 25 A 419 THR PRO ALA GLY ASP ILE ALA GLU ILE ALA ALA VAL LYS SEQRES 26 A 419 SER VAL PHE GLY GLU HIS ALA HIS ALA LEU SER MET SER SEQRES 27 A 419 SER THR LYS SER MET THR GLY HIS LEU LEU GLY ALA ALA SEQRES 28 A 419 GLY ALA VAL GLU ALA ILE PHE SER VAL LEU ALA LEU ARG SEQRES 29 A 419 ASP GLN VAL ALA PRO PRO THR ILE ASN LEU ASP ASN PRO SEQRES 30 A 419 ASP GLU GLY CYS ASP LEU ASP LEU VAL ALA HIS GLU ALA SEQRES 31 A 419 LYS PRO ARG LYS ILE ASP VAL ALA LEU SER ASN SER PHE SEQRES 32 A 419 GLY PHE GLY GLY THR ASN GLY THR LEU VAL PHE ARG ARG SEQRES 33 A 419 PHE ALA ASP SEQRES 1 B 419 GLY HIS MET ALA SER MET SER ARG ARG ARG VAL VAL ILE SEQRES 2 B 419 THR GLY MET GLY MET LEU SER PRO LEU GLY LEU ASP VAL SEQRES 3 B 419 PRO SER SER TRP GLU GLY ILE LEU ALA GLY ARG SER GLY SEQRES 4 B 419 ILE ALA PRO ILE GLU HIS MET ASP LEU SER ALA TYR SER SEQRES 5 B 419 THR ARG PHE GLY GLY SER VAL LYS GLY PHE ASN VAL GLU SEQRES 6 B 419 GLU TYR LEU SER ALA LYS GLU ALA ARG LYS LEU ASP LEU SEQRES 7 B 419 PHE ILE GLN TYR GLY LEU ALA ALA SER PHE GLN ALA VAL SEQRES 8 B 419 ARG ASP SER GLY LEU GLU VAL THR ASP ALA ASN ARG GLU SEQRES 9 B 419 ARG ILE GLY VAL SER MET GLY SER GLY ILE GLY GLY LEU SEQRES 10 B 419 THR ASN ILE GLU ASN ASN CYS ARG SER LEU PHE GLU GLN SEQRES 11 B 419 GLY PRO ARG ARG ILE SER PRO PHE PHE VAL PRO GLY SER SEQRES 12 B 419 ILE ILE ASN MET VAL SER GLY PHE LEU SER ILE HIS LEU SEQRES 13 B 419 GLY LEU GLN GLY PRO ASN TYR ALA LEU THR THR ALA ALA SEQRES 14 B 419 THR THR GLY THR HIS SER ILE GLY MET ALA ALA ARG ASN SEQRES 15 B 419 ILE ALA TYR GLY GLU ALA ASP VAL MET VAL ALA GLY GLY SEQRES 16 B 419 SER GLU MET ALA ALA CYS GLY LEU GLY LEU GLY GLY PHE SEQRES 17 B 419 GLY ALA ALA ARG ALA LEU SER THR ARG ASN ASP GLU PRO SEQRES 18 B 419 THR ARG ALA SER ARG PRO TRP ASP ARG ASP ARG ASP GLY SEQRES 19 B 419 PHE VAL LEU SER ASP GLY SER GLY ALA LEU VAL LEU GLU SEQRES 20 B 419 GLU LEU GLU HIS ALA ARG ALA ARG GLY ALA ARG ILE TYR SEQRES 21 B 419 ALA GLU LEU VAL GLY PHE GLY MET SER GLY ASP ALA PHE SEQRES 22 B 419 HIS MET THR ALA PRO PRO GLU ASP GLY ALA GLY ALA ALA SEQRES 23 B 419 ARG CYS MET LYS ASN ALA LEU ARG ASP ALA GLY LEU ASP SEQRES 24 B 419 PRO ARG GLN VAL ASP TYR ILE ASN ALA HIS GLY THR SER SEQRES 25 B 419 THR PRO ALA GLY ASP ILE ALA GLU ILE ALA ALA VAL LYS SEQRES 26 B 419 SER VAL PHE GLY GLU HIS ALA HIS ALA LEU SER MET SER SEQRES 27 B 419 SER THR LYS SER MET THR GLY HIS LEU LEU GLY ALA ALA SEQRES 28 B 419 GLY ALA VAL GLU ALA ILE PHE SER VAL LEU ALA LEU ARG SEQRES 29 B 419 ASP GLN VAL ALA PRO PRO THR ILE ASN LEU ASP ASN PRO SEQRES 30 B 419 ASP GLU GLY CYS ASP LEU ASP LEU VAL ALA HIS GLU ALA SEQRES 31 B 419 LYS PRO ARG LYS ILE ASP VAL ALA LEU SER ASN SER PHE SEQRES 32 B 419 GLY PHE GLY GLY THR ASN GLY THR LEU VAL PHE ARG ARG SEQRES 33 B 419 PHE ALA ASP HET FMT A 501 5 HET XG7 A 502 42 HET FMT A 503 5 HET EDO A 504 10 HET FMT B 501 5 HET FMT B 502 5 HET FMT B 503 5 HET XG7 B 504 42 HET FMT B 505 5 HET DMS B 506 10 HETNAM FMT FORMIC ACID HETNAM XG7 3-AZANYL-N-(1,5-DIMETHYL-3-OXIDANYLIDENE-2-PHENYL- HETNAM 2 XG7 PYRAZOL-4-YL)BENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN XG7 3-AMINO-N-(1,5-DIMETHYL-3-OXO-2-PHENYL-2,3-DIHYDRO-1H- HETSYN 2 XG7 PYRAZOL-4-YL)BENZAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FMT 6(C H2 O2) FORMUL 4 XG7 2(C18 H18 N4 O2) FORMUL 6 EDO C2 H6 O2 FORMUL 12 DMS C2 H6 O S FORMUL 13 HOH *280(H2 O) HELIX 1 AA1 ASP A 20 ALA A 30 1 11 HELIX 2 AA2 ASN A 58 TYR A 62 5 5 HELIX 3 AA3 SER A 64 LYS A 70 1 7 HELIX 4 AA4 ASP A 72 GLY A 90 1 19 HELIX 5 AA5 ASN A 97 GLU A 99 5 3 HELIX 6 AA6 GLY A 111 GLY A 126 1 16 HELIX 7 AA7 PRO A 127 ILE A 130 5 4 HELIX 8 AA8 ASN A 141 GLY A 152 1 12 HELIX 9 AA9 THR A 162 ALA A 164 5 3 HELIX 10 AB1 THR A 165 TYR A 180 1 16 HELIX 11 AB2 CYS A 196 ALA A 206 1 11 HELIX 12 AB3 GLU A 215 ALA A 219 5 5 HELIX 13 AB4 LEU A 244 ARG A 250 1 7 HELIX 14 AB5 GLY A 277 GLY A 292 1 16 HELIX 15 AB6 ASP A 294 VAL A 298 5 5 HELIX 16 AB7 THR A 308 GLY A 324 1 17 HELIX 17 AB8 GLU A 325 ALA A 329 5 5 HELIX 18 AB9 THR A 335 GLY A 340 1 6 HELIX 19 AC1 LEU A 342 GLY A 344 5 3 HELIX 20 AC2 ALA A 345 GLN A 361 1 17 HELIX 21 AC3 ASP B 20 ALA B 30 1 11 HELIX 22 AC4 ASN B 58 TYR B 62 5 5 HELIX 23 AC5 SER B 64 ARG B 69 1 6 HELIX 24 AC6 ASP B 72 GLY B 90 1 19 HELIX 25 AC7 ASN B 97 GLU B 99 5 3 HELIX 26 AC8 GLY B 111 GLY B 126 1 16 HELIX 27 AC9 PRO B 127 ILE B 130 5 4 HELIX 28 AD1 ASN B 141 GLY B 152 1 12 HELIX 29 AD2 THR B 162 ALA B 164 5 3 HELIX 30 AD3 THR B 165 TYR B 180 1 16 HELIX 31 AD4 CYS B 196 ALA B 206 1 11 HELIX 32 AD5 GLU B 215 ALA B 219 5 5 HELIX 33 AD6 LEU B 244 ARG B 250 1 7 HELIX 34 AD7 GLY B 277 GLY B 292 1 16 HELIX 35 AD8 ASP B 294 VAL B 298 5 5 HELIX 36 AD9 THR B 308 GLY B 324 1 17 HELIX 37 AE1 GLU B 325 ALA B 329 5 5 HELIX 38 AE2 THR B 335 GLY B 340 1 6 HELIX 39 AE3 LEU B 342 GLY B 344 5 3 HELIX 40 AE4 ALA B 345 GLN B 361 1 17 SHEET 1 AA110 ASN A 157 TYR A 158 0 SHEET 2 AA110 ILE A 101 GLY A 106 1 N VAL A 103 O TYR A 158 SHEET 3 AA110 VAL A 185 GLU A 192 1 O VAL A 187 N SER A 104 SHEET 4 AA110 GLY A 235 GLU A 243 -1 O LEU A 241 N MET A 186 SHEET 5 AA110 VAL A 6 LEU A 14 -1 N VAL A 7 O GLU A 242 SHEET 6 AA110 ALA A 256 GLY A 265 -1 O ALA A 256 N ILE A 8 SHEET 7 AA110 THR A 403 ARG A 410 -1 O ASN A 404 N SER A 264 SHEET 8 AA110 VAL A 392 GLY A 399 -1 N ALA A 393 O PHE A 409 SHEET 9 AA110 TYR A 300 ASN A 302 1 N ASN A 302 O LEU A 394 SHEET 10 AA110 SER A 331 SER A 333 1 O SER A 333 N ILE A 301 SHEET 1 AA2 2 ALA A 36 PRO A 37 0 SHEET 2 AA2 2 PHE A 50 GLY A 51 -1 O GLY A 51 N ALA A 36 SHEET 1 AA3 2 VAL A 362 ALA A 363 0 SHEET 2 AA3 2 LYS A 386 PRO A 387 -1 O LYS A 386 N ALA A 363 SHEET 1 AA410 ASN B 157 TYR B 158 0 SHEET 2 AA410 ILE B 101 GLY B 106 1 N VAL B 103 O TYR B 158 SHEET 3 AA410 VAL B 185 GLU B 192 1 O VAL B 187 N SER B 104 SHEET 4 AA410 GLY B 235 GLU B 243 -1 O LEU B 241 N MET B 186 SHEET 5 AA410 VAL B 6 LEU B 14 -1 N VAL B 7 O GLU B 242 SHEET 6 AA410 ALA B 256 GLY B 265 -1 O ALA B 256 N ILE B 8 SHEET 7 AA410 THR B 403 ARG B 410 -1 O ASN B 404 N SER B 264 SHEET 8 AA410 VAL B 392 GLY B 399 -1 N ALA B 393 O PHE B 409 SHEET 9 AA410 TYR B 300 ASN B 302 1 N ASN B 302 O LEU B 394 SHEET 10 AA410 SER B 331 SER B 333 1 O SER B 333 N ILE B 301 SHEET 1 AA5 2 ALA B 36 PRO B 37 0 SHEET 2 AA5 2 PHE B 50 GLY B 51 -1 O GLY B 51 N ALA B 36 SHEET 1 AA6 2 VAL B 362 ALA B 363 0 SHEET 2 AA6 2 LYS B 386 PRO B 387 -1 O LYS B 386 N ALA B 363 CRYST1 101.018 103.667 141.315 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007076 0.00000