HEADER VIRAL PROTEIN 31-OCT-23 8R0S TITLE STRUCTURE OF REVERSE TRANSCRIPTASE FROM CAULIFLOWER MOSAIC VIRUS IN TITLE 2 COMPLEX WITH RNA/DNA HYBRID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENZYMATIC POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.49; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'- COMPND 8 R(*GP*UP*CP*CP*AP*GP*CP*AP*GP*UP*GP*CP*GP*UP*AP*GP*C)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*GP*CP*TP*AP*CP*GP*CP*AP*CP*TP*GP*CP*TP*GP*GP*A)- COMPND 13 3'); COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULIFLOWER MOSAIC VIRUS; SOURCE 3 ORGANISM_TAXID: 10641; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC GENE; SOURCE 9 ORGANISM_TAXID: 2005392; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC GENE; SOURCE 13 ORGANISM_TAXID: 2005392 KEYWDS REVERSE TRANSCRIPTASE, PROTEIN-RNA-DNA COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.PRABAHARAN,M.FIGIEL,S.CHAMERA,R.SZCZEPANOWSKI,E.NOWAK,M.NOWOTNY REVDAT 2 21-AUG-24 8R0S 1 JRNL REVDAT 1 24-JUL-24 8R0S 0 JRNL AUTH C.PRABAHARAN,M.FIGIEL,R.H.SZCZEPANOWSKI,K.SKOWRONEK,W.ZAJKO, JRNL AUTH 2 V.THANGARAJ,S.CHAMERA,E.NOWAK,M.NOWOTNY JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF CAULIFLOWER JRNL TITL 2 MOSAIC VIRUS REVERSE TRANSCRIPTASE. JRNL REF J.BIOL.CHEM. V. 300 07555 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39002684 JRNL DOI 10.1016/J.JBC.2024.107555 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2500 - 5.0600 1.00 2861 151 0.1936 0.2382 REMARK 3 2 5.0600 - 4.0200 1.00 2711 143 0.1727 0.1867 REMARK 3 3 4.0200 - 3.5100 1.00 2685 141 0.2008 0.2457 REMARK 3 4 3.5100 - 3.1900 1.00 2679 141 0.2272 0.3217 REMARK 3 5 3.1900 - 2.9600 1.00 2655 140 0.2483 0.3269 REMARK 3 6 2.9600 - 2.7900 1.00 2633 138 0.2677 0.3162 REMARK 3 7 2.7900 - 2.6500 1.00 2650 140 0.2541 0.3771 REMARK 3 8 2.6500 - 2.5300 1.00 2635 139 0.2720 0.3264 REMARK 3 9 2.5300 - 2.4300 1.00 2646 139 0.3140 0.4253 REMARK 3 10 2.4300 - 2.3500 1.00 2600 136 0.3518 0.3821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.386 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.467 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4499 REMARK 3 ANGLE : 1.010 6249 REMARK 3 CHIRALITY : 0.054 712 REMARK 3 PLANARITY : 0.008 684 REMARK 3 DIHEDRAL : 10.674 847 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1292134398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.032340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.04M CITRIC ACID, 0.06M BIS-TRIS REMARK 280 PROPANE , 20% PEG 3350, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.41000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.41000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -101 REMARK 465 GLY A -100 REMARK 465 SER A -99 REMARK 465 SER A -98 REMARK 465 HIS A -97 REMARK 465 HIS A -96 REMARK 465 HIS A -95 REMARK 465 HIS A -94 REMARK 465 HIS A -93 REMARK 465 HIS A -92 REMARK 465 SER A -91 REMARK 465 SER A -90 REMARK 465 GLY A -89 REMARK 465 LEU A -88 REMARK 465 VAL A -87 REMARK 465 PRO A -86 REMARK 465 ARG A -85 REMARK 465 GLY A -84 REMARK 465 SER A -83 REMARK 465 HIS A -82 REMARK 465 MET A -81 REMARK 465 GLU A -80 REMARK 465 GLY A -79 REMARK 465 GLU A -78 REMARK 465 TYR A -77 REMARK 465 ILE A -76 REMARK 465 LYS A -75 REMARK 465 LEU A -74 REMARK 465 LYS A -73 REMARK 465 VAL A -72 REMARK 465 ILE A -71 REMARK 465 GLY A -70 REMARK 465 GLN A -69 REMARK 465 ASP A -68 REMARK 465 SER A -67 REMARK 465 SER A -66 REMARK 465 GLU A -65 REMARK 465 ILE A -64 REMARK 465 HIS A -63 REMARK 465 PHE A -62 REMARK 465 LYS A -61 REMARK 465 VAL A -60 REMARK 465 LYS A -59 REMARK 465 MET A -58 REMARK 465 THR A -57 REMARK 465 THR A -56 REMARK 465 HIS A -55 REMARK 465 LEU A -54 REMARK 465 LYS A -53 REMARK 465 LYS A -52 REMARK 465 LEU A -51 REMARK 465 LYS A -50 REMARK 465 GLU A -49 REMARK 465 SER A -48 REMARK 465 TYR A -47 REMARK 465 CYS A -46 REMARK 465 GLN A -45 REMARK 465 ARG A -44 REMARK 465 GLN A -43 REMARK 465 GLY A -42 REMARK 465 VAL A -41 REMARK 465 PRO A -40 REMARK 465 MET A -39 REMARK 465 ASN A -38 REMARK 465 SER A -37 REMARK 465 LEU A -36 REMARK 465 ARG A -35 REMARK 465 PHE A -34 REMARK 465 LEU A -33 REMARK 465 PHE A -32 REMARK 465 GLU A -31 REMARK 465 GLY A -30 REMARK 465 GLN A -29 REMARK 465 ARG A -28 REMARK 465 ILE A -27 REMARK 465 ALA A -26 REMARK 465 ASP A -25 REMARK 465 ASN A -24 REMARK 465 HIS A -23 REMARK 465 THR A -22 REMARK 465 PRO A -21 REMARK 465 LYS A -20 REMARK 465 GLU A -19 REMARK 465 LEU A -18 REMARK 465 GLY A -17 REMARK 465 MET A -16 REMARK 465 GLU A -15 REMARK 465 GLU A -14 REMARK 465 GLU A -13 REMARK 465 ASP A -12 REMARK 465 VAL A -11 REMARK 465 ILE A -10 REMARK 465 GLU A -9 REMARK 465 VAL A -8 REMARK 465 TYR A -7 REMARK 465 GLN A -6 REMARK 465 GLU A -5 REMARK 465 GLN A -4 REMARK 465 THR A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 PRO A 313 REMARK 465 GLY A 369 REMARK 465 LYS A 460 REMARK 465 GLY A 461 REMARK 465 THR A 462 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 1 CG CD CE NZ REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 GLN A 10 CG CD OE1 NE2 REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 MET A 57 CG SD CE REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 VAL A 89 CG1 CG2 REMARK 470 ASN A 91 CG OD1 ND2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLN A 152 CG CD OE1 NE2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ILE A 263 CG1 CG2 CD1 REMARK 470 LEU A 264 CG CD1 CD2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 LYS A 302 CG CD CE NZ REMARK 470 GLN A 305 CG CD OE1 NE2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 ASN A 311 CG OD1 ND2 REMARK 470 VAL A 312 CG1 CG2 REMARK 470 ARG A 315 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 318 CE NZ REMARK 470 LEU A 322 CG CD1 CD2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 GLN A 332 CG CD OE1 NE2 REMARK 470 LYS A 345 CE NZ REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 LYS A 384 CD CE NZ REMARK 470 HIS A 391 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 427 OG REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 ASP A 436 CG OD1 OD2 REMARK 470 LYS A 438 CG CD CE NZ REMARK 470 SER A 450 OG REMARK 470 ASN A 464 CG OD1 ND2 REMARK 470 ARG A 472 CG CD NE CZ NH1 NH2 REMARK 470 G C 2 N9 C8 N7 C5 C6 O6 N1 REMARK 470 G C 2 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 G C 7 O HOH C 101 2.08 REMARK 500 O PHE A 270 NZ LYS A 328 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 32 O3' DG D 32 C3' -0.048 REMARK 500 DG D 33 O3' DG D 33 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 24 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 32 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG D 33 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 -22.78 92.46 REMARK 500 PRO A 51 -178.22 -63.13 REMARK 500 SER A 143 59.24 39.63 REMARK 500 VAL A 202 -78.75 53.87 REMARK 500 THR A 288 -39.14 -39.69 REMARK 500 ARG A 377 145.74 -170.98 REMARK 500 LYS A 384 172.83 -57.47 REMARK 500 ASN A 430 20.42 -79.09 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8R0S A 1 475 UNP A0A2D2PYL0_9VIRU DBREF2 8R0S A A0A2D2PYL0 197 671 DBREF 8R0S C 2 18 PDB 8R0S 8R0S 2 18 DBREF 8R0S D 19 34 PDB 8R0S 8R0S 19 34 SEQADV 8R0S MET A -101 UNP A0A2D2PYL INITIATING METHIONINE SEQADV 8R0S GLY A -100 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -99 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -98 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -97 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -96 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -95 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -94 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -93 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -92 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -91 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -90 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -89 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LEU A -88 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S VAL A -87 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S PRO A -86 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ARG A -85 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -84 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -83 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -82 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S MET A -81 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -80 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -79 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -78 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S TYR A -77 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ILE A -76 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -75 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LEU A -74 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -73 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S VAL A -72 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ILE A -71 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -70 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLN A -69 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ASP A -68 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -67 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -66 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -65 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ILE A -64 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -63 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S PHE A -62 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -61 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S VAL A -60 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -59 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S MET A -58 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S THR A -57 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S THR A -56 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -55 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LEU A -54 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -53 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -52 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LEU A -51 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -50 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -49 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -48 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S TYR A -47 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S CYS A -46 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLN A -45 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ARG A -44 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLN A -43 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -42 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S VAL A -41 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S PRO A -40 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S MET A -39 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ASN A -38 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A -37 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LEU A -36 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ARG A -35 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S PHE A -34 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LEU A -33 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S PHE A -32 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -31 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -30 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLN A -29 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ARG A -28 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ILE A -27 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ALA A -26 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ASP A -25 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ASN A -24 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S HIS A -23 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S THR A -22 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S PRO A -21 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LYS A -20 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -19 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S LEU A -18 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -17 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S MET A -16 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -15 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -14 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -13 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ASP A -12 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S VAL A -11 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ILE A -10 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -9 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S VAL A -8 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S TYR A -7 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLN A -6 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLU A -5 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLN A -4 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S THR A -3 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -2 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S GLY A -1 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S SER A 0 UNP A0A2D2PYL EXPRESSION TAG SEQADV 8R0S ASN A 28 UNP A0A2D2PYL SER 224 CONFLICT SEQADV 8R0S ASN A 421 UNP A0A2D2PYL ASP 617 CONFLICT SEQRES 1 A 577 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 577 LEU VAL PRO ARG GLY SER HIS MET GLU GLY GLU TYR ILE SEQRES 3 A 577 LYS LEU LYS VAL ILE GLY GLN ASP SER SER GLU ILE HIS SEQRES 4 A 577 PHE LYS VAL LYS MET THR THR HIS LEU LYS LYS LEU LYS SEQRES 5 A 577 GLU SER TYR CYS GLN ARG GLN GLY VAL PRO MET ASN SER SEQRES 6 A 577 LEU ARG PHE LEU PHE GLU GLY GLN ARG ILE ALA ASP ASN SEQRES 7 A 577 HIS THR PRO LYS GLU LEU GLY MET GLU GLU GLU ASP VAL SEQRES 8 A 577 ILE GLU VAL TYR GLN GLU GLN THR GLY GLY SER LYS LEU SEQRES 9 A 577 PHE ILE THR GLN GLN ARG MET GLN LYS ILE GLU GLU LEU SEQRES 10 A 577 LEU GLU LYS VAL CYS SER GLU ASN PRO LEU ASP PRO ASN SEQRES 11 A 577 LYS THR LYS GLN TRP MET LYS ALA SER ILE LYS LEU SER SEQRES 12 A 577 ASP PRO SER LYS ALA ILE LYS VAL LYS PRO MET LYS TYR SEQRES 13 A 577 SER PRO MET ASP ARG GLU GLU PHE ASP LYS GLN ILE LYS SEQRES 14 A 577 GLU LEU LEU ASP LEU LYS VAL ILE LYS PRO SER LYS SER SEQRES 15 A 577 PRO HIS MET ALA PRO ALA PHE LEU VAL ASN ASN GLU ALA SEQRES 16 A 577 GLU LYS ARG ARG GLY LYS LYS ARG MET VAL VAL ASN TYR SEQRES 17 A 577 LYS ALA MET ASN LYS ALA THR VAL GLY ASP ALA TYR ASN SEQRES 18 A 577 LEU PRO ASN LYS ASP GLU LEU LEU THR LEU ILE ARG GLY SEQRES 19 A 577 LYS LYS ILE PHE SER SER PHE ASP CYS LYS SER GLY PHE SEQRES 20 A 577 TRP GLN VAL LEU LEU ASP GLN GLU SER ARG PRO LEU THR SEQRES 21 A 577 ALA PHE THR CYS PRO GLN GLY HIS TYR GLU TRP ASN VAL SEQRES 22 A 577 VAL PRO PHE GLY LEU LYS GLN ALA PRO SER ILE PHE GLN SEQRES 23 A 577 ARG HIS MET ASP GLU ALA PHE ARG VAL PHE ARG LYS PHE SEQRES 24 A 577 CYS CYS VAL TYR VAL ASP ASP ILE LEU VAL PHE SER ASN SEQRES 25 A 577 ASN GLU GLU ASP HIS LEU LEU HIS VAL ALA MET ILE LEU SEQRES 26 A 577 GLN LYS CYS ASN GLN HIS GLY ILE ILE LEU SER LYS LYS SEQRES 27 A 577 LYS ALA GLN LEU PHE LYS LYS LYS ILE ASN PHE LEU GLY SEQRES 28 A 577 LEU GLU ILE ASP GLU GLY THR HIS LYS PRO GLN GLY HIS SEQRES 29 A 577 ILE LEU GLU HIS ILE ASN LYS PHE PRO ASP THR LEU GLU SEQRES 30 A 577 ASP LYS LYS GLN LEU GLN ARG PHE LEU GLY ILE LEU THR SEQRES 31 A 577 TYR ALA SER ASP TYR ILE PRO LYS LEU ALA GLN ILE ARG SEQRES 32 A 577 LYS PRO LEU GLN ALA LYS LEU LYS GLU ASN VAL PRO TRP SEQRES 33 A 577 ARG TRP THR LYS GLU ASP THR LEU TYR MET GLN LYS VAL SEQRES 34 A 577 LYS LYS ASN LEU GLN GLY PHE PRO PRO LEU HIS HIS PRO SEQRES 35 A 577 LEU PRO GLU GLU LYS LEU ILE ILE GLU THR ASP ALA SER SEQRES 36 A 577 ASP ASP TYR TRP GLY GLY MET LEU LYS ALA ILE LYS ILE SEQRES 37 A 577 ASN GLU GLY THR ASN THR GLU LEU ILE CYS ARG TYR ALA SEQRES 38 A 577 SER GLY SER PHE LYS ALA ALA GLU LYS ASN TYR HIS SER SEQRES 39 A 577 ASN ASP LYS GLU THR LEU ALA VAL ILE ASN THR ILE LYS SEQRES 40 A 577 LYS PHE SER ILE TYR LEU THR PRO VAL HIS PHE LEU ILE SEQRES 41 A 577 ARG THR ASN ASN THR HIS PHE LYS SER PHE VAL ASN LEU SEQRES 42 A 577 ASN TYR LYS GLY ASP SER LYS LEU GLY ARG ASN ILE ARG SEQRES 43 A 577 TRP GLN ALA TRP LEU SER HIS TYR SER PHE ASP VAL GLU SEQRES 44 A 577 HIS ILE LYS GLY THR ASP ASN HIS PHE ALA ASP PHE LEU SEQRES 45 A 577 SER ARG GLU PHE ASN SEQRES 1 C 17 G U C C A G C A G U G C G SEQRES 2 C 17 U A G C SEQRES 1 D 16 DG DC DT DA DC DG DC DA DC DT DG DC DT SEQRES 2 D 16 DG DG DA FORMUL 4 HOH *74(H2 O) HELIX 1 AA1 PHE A 3 CYS A 20 1 18 HELIX 2 AA2 SER A 55 LEU A 72 1 18 HELIX 3 AA3 ASN A 91 GLY A 98 1 8 HELIX 4 AA4 TYR A 106 ALA A 112 1 7 HELIX 5 AA5 ASN A 122 LEU A 129 1 8 HELIX 6 AA6 SER A 143 VAL A 148 5 6 HELIX 7 AA7 SER A 154 ALA A 159 5 6 HELIX 8 AA8 GLN A 178 ARG A 192 1 15 HELIX 9 AA9 VAL A 193 ARG A 195 5 3 HELIX 10 AB1 ASN A 211 GLY A 230 1 20 HELIX 11 AB2 SER A 234 ALA A 238 5 5 HELIX 12 AB3 GLN A 260 GLU A 265 1 6 HELIX 13 AB4 HIS A 266 PHE A 270 5 5 HELIX 14 AB5 ASP A 276 THR A 288 1 13 HELIX 15 AB6 TYR A 289 SER A 291 5 3 HELIX 16 AB7 LYS A 296 LYS A 309 1 14 HELIX 17 AB8 THR A 317 LEU A 331 1 15 HELIX 18 AB9 ALA A 385 TYR A 390 5 6 HELIX 19 AC1 HIS A 391 THR A 412 1 22 HELIX 20 AC2 HIS A 424 ASN A 430 1 7 HELIX 21 AC3 LYS A 438 HIS A 451 1 14 HELIX 22 AC4 ASN A 464 ASN A 475 1 12 SHEET 1 AA1 2 LYS A 35 ALA A 36 0 SHEET 2 AA1 2 LEU A 149 LEU A 150 1 O LEU A 149 N ALA A 36 SHEET 1 AA2 3 ILE A 75 PRO A 77 0 SHEET 2 AA2 3 GLY A 165 TRP A 169 -1 O GLU A 168 N LYS A 76 SHEET 3 AA2 3 PHE A 160 CYS A 162 -1 N PHE A 160 O TYR A 167 SHEET 1 AA3 2 ALA A 86 VAL A 89 0 SHEET 2 AA3 2 ARG A 101 VAL A 104 -1 O VAL A 103 N PHE A 87 SHEET 1 AA4 4 CYS A 198 TYR A 201 0 SHEET 2 AA4 4 ASP A 204 SER A 209 -1 O LEU A 206 N CYS A 199 SHEET 3 AA4 4 ILE A 135 ASP A 140 -1 N SER A 137 O VAL A 207 SHEET 4 AA4 4 GLN A 239 LYS A 242 -1 O LYS A 242 N PHE A 136 SHEET 1 AA5 4 ILE A 245 PHE A 247 0 SHEET 2 AA5 4 LEU A 250 ILE A 252 -1 O ILE A 252 N ILE A 245 SHEET 3 AA5 4 THR A 256 PRO A 259 -1 O LYS A 258 N GLU A 251 SHEET 4 AA5 4 LEU A 337 HIS A 338 -1 O LEU A 337 N HIS A 257 SHEET 1 AA6 5 THR A 372 SER A 382 0 SHEET 2 AA6 5 TYR A 356 LYS A 365 -1 N LEU A 361 O ARG A 377 SHEET 3 AA6 5 LYS A 345 ALA A 352 -1 N ILE A 347 O LYS A 362 SHEET 4 AA6 5 HIS A 415 THR A 420 1 O ARG A 419 N ILE A 348 SHEET 5 AA6 5 SER A 453 HIS A 458 1 O ASP A 455 N ILE A 418 CRYST1 88.820 140.520 52.580 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019019 0.00000