HEADER TRANSFERASE 03-NOV-23 8R25 TITLE PIM1 IN COMPLEX WITH 4-(5-(4-AMINOPHENYL)-1H-PYRAZOL-1-YL)BENZOIC ACID TITLE 2 AND PIMTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PIMTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLIC-SGC; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS SERINE KINASE, KINASE, COMPLEX, PIM1, PIM, PIM-1, INHIBITOR, KEYWDS 2 TUMORIGENISIS, CANCER, PIMTIDE, PROTO ONCOGEN, ATP, PHOSPHORYLATION, KEYWDS 3 APOPTOSIS, CELL CYCLE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.M.HOCHBAN,A.HEINE,W.E.DIEDERICH REVDAT 1 13-NOV-24 8R25 0 JRNL AUTH P.M.M.HOCHBAN,L.HEYDER,A.HEINE,W.E.DIEDERICH JRNL TITL PIM1 IN COMPLEX WITH JRNL TITL 2 4-(5-(4-AMINOPHENYL)-1H-PYRAZOL-1-YL)BENZOIC ACID AND JRNL TITL 3 PIMTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.2900 - 4.3700 1.00 2775 145 0.1699 0.1980 REMARK 3 2 4.3700 - 3.4700 1.00 2739 144 0.1588 0.1897 REMARK 3 3 3.4700 - 3.0300 1.00 2713 143 0.1813 0.2027 REMARK 3 4 3.0300 - 2.7500 1.00 2721 143 0.1826 0.2345 REMARK 3 5 2.7500 - 2.5500 1.00 2746 145 0.1973 0.2317 REMARK 3 6 2.5500 - 2.4000 1.00 2703 142 0.1886 0.2272 REMARK 3 7 2.4000 - 2.2800 1.00 2692 141 0.1860 0.2512 REMARK 3 8 2.2800 - 2.1800 1.00 2694 142 0.2016 0.2255 REMARK 3 9 2.1800 - 2.1000 1.00 2708 142 0.2302 0.2398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.224 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2300 REMARK 3 ANGLE : 0.481 3126 REMARK 3 CHIRALITY : 0.043 332 REMARK 3 PLANARITY : 0.005 425 REMARK 3 DIHEDRAL : 11.364 836 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.0638-121.1969 11.8872 REMARK 3 T TENSOR REMARK 3 T11: 0.6346 T22: 0.4985 REMARK 3 T33: 0.5159 T12: 0.0623 REMARK 3 T13: 0.1171 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.0510 L22: 0.1694 REMARK 3 L33: 0.1864 L12: -0.0554 REMARK 3 L13: -0.0305 L23: -0.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.2747 S12: -0.6092 S13: 0.3723 REMARK 3 S21: 0.4052 S22: -0.3285 S23: -0.1769 REMARK 3 S31: -0.4064 S32: 0.3835 S33: -0.0030 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -77.4537-116.6818 -5.2528 REMARK 3 T TENSOR REMARK 3 T11: 0.5379 T22: 0.9002 REMARK 3 T33: 0.7440 T12: 0.1680 REMARK 3 T13: -0.0041 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.0327 L22: 0.2317 REMARK 3 L33: 0.0593 L12: 0.0007 REMARK 3 L13: -0.0433 L23: 0.0175 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: -0.1431 S13: 0.2060 REMARK 3 S21: 0.4419 S22: -0.2401 S23: 0.5551 REMARK 3 S31: -0.3760 S32: 0.2376 S33: -0.0039 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -68.0218-115.2427 -10.8142 REMARK 3 T TENSOR REMARK 3 T11: 0.4082 T22: 0.4769 REMARK 3 T33: 0.4962 T12: 0.0340 REMARK 3 T13: 0.0417 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.4416 L22: 0.3787 REMARK 3 L33: 0.5134 L12: -0.3492 REMARK 3 L13: 0.0748 L23: 0.0145 REMARK 3 S TENSOR REMARK 3 S11: 0.2805 S12: 0.0873 S13: 0.3036 REMARK 3 S21: -0.3465 S22: -0.2556 S23: 0.1105 REMARK 3 S31: -0.4417 S32: -0.2105 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.6335-124.2300 -3.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.3207 T22: 0.5411 REMARK 3 T33: 0.4463 T12: 0.0088 REMARK 3 T13: -0.0037 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.4103 L22: 0.6501 REMARK 3 L33: 1.1523 L12: -0.2194 REMARK 3 L13: -0.2970 L23: 0.8658 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: -0.1059 S13: -0.1026 REMARK 3 S21: -0.0042 S22: 0.0801 S23: 0.4861 REMARK 3 S31: -0.0535 S32: -0.5800 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.5118-129.9089 -0.0245 REMARK 3 T TENSOR REMARK 3 T11: 0.3037 T22: 0.3841 REMARK 3 T33: 0.3406 T12: -0.0082 REMARK 3 T13: 0.0012 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.1555 L22: 1.2089 REMARK 3 L33: 2.6789 L12: 0.1331 REMARK 3 L13: -0.3590 L23: -0.5051 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: -0.0741 S13: 0.0385 REMARK 3 S21: 0.0772 S22: 0.0484 S23: 0.0010 REMARK 3 S31: 0.0662 S32: 0.3000 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8-7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 3.1.9 REMARK 200 DATA SCALING SOFTWARE : XDS 3.1.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25812 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-PROPANE (PH 7.0), 10% REMARK 280 ETHYLENE GLYCOL, 0.3% DMSO, 20% PEG3350, 200 MM MG(OAC)2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.48533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.74267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.11400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.37133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.85667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 LEU A 12 REMARK 465 ARG A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 CYS A 17 REMARK 465 ASN A 18 REMARK 465 ASP A 19 REMARK 465 LEU A 20 REMARK 465 HIS A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 LEU A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 GLY A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 SER A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 ALA B 1 REMARK 465 PRO B 11 REMARK 465 PRO B 12 REMARK 465 THR B 13 REMARK 465 ALA B 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 34 CG CD1 CD2 REMARK 470 GLU A 35 CG CD OE1 OE2 REMARK 470 SER A 36 OG REMARK 470 GLN A 39 CD OE1 NE2 REMARK 470 PHE A 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 56 CG2 CD1 REMARK 470 VAL A 58 CG1 CG2 REMARK 470 SER A 59 OG REMARK 470 LEU A 62 CD1 CD2 REMARK 470 ARG A 73 CG CD NE CZ NH1 NH2 REMARK 470 SER A 75 OG REMARK 470 ASP A 76 OD1 OD2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LEU A 80 CG CD1 CD2 REMARK 470 ASN A 82 CG OD1 ND2 REMARK 470 THR A 84 OG1 CG2 REMARK 470 ARG A 85 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CE NZ REMARK 470 SER A 97 OG REMARK 470 SER A 98 OG REMARK 470 SER A 101 OG REMARK 470 ARG A 105 CD NE CZ NH1 NH2 REMARK 470 GLU A 124 OE2 REMARK 470 ARG A 179 CZ NH1 NH2 REMARK 470 ASP A 202 CG OD1 OD2 REMARK 470 ARG A 214 NE CZ NH1 NH2 REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 ARG A 274 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LYS B 3 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 49 32.46 -92.34 REMARK 500 ASP A 60 15.39 -152.37 REMARK 500 ASP A 167 46.15 -146.19 REMARK 500 ASP A 186 81.80 56.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7QB2 RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 7QFM RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 7Z6U RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8AFR RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R0H RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R0Q RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R0W RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R0Y RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R10 RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R18 RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R1K RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R1N RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R1P RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R1T RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR REMARK 900 RELATED ID: 8R1W RELATED DB: PDB REMARK 900 COMPLEXED WITH ANOTHER INHIBITOR DBREF 8R25 A 1 312 UNP P11309 PIM1_HUMAN 1 312 DBREF 8R25 B 1 14 PDB 8R25 8R25 1 14 SEQADV 8R25 SER A 0 UNP P11309 EXPRESSION TAG SEQADV 8R25 GLY A 250 UNP P11309 ARG 250 ENGINEERED MUTATION SEQRES 1 A 313 SER MET LEU LEU SER LYS ILE ASN SER LEU ALA HIS LEU SEQRES 2 A 313 ARG ALA ALA PRO CYS ASN ASP LEU HIS ALA THR LYS LEU SEQRES 3 A 313 ALA PRO GLY LYS GLU LYS GLU PRO LEU GLU SER GLN TYR SEQRES 4 A 313 GLN VAL GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER SEQRES 5 A 313 VAL TYR SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL SEQRES 6 A 313 ALA ILE LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP SEQRES 7 A 313 GLY GLU LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL SEQRES 8 A 313 VAL LEU LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL SEQRES 9 A 313 ILE ARG LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE SEQRES 10 A 313 VAL LEU ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU SEQRES 11 A 313 PHE ASP PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU SEQRES 12 A 313 LEU ALA ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL SEQRES 13 A 313 ARG HIS CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE SEQRES 14 A 313 LYS ASP GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU SEQRES 15 A 313 LEU LYS LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS SEQRES 16 A 313 ASP THR VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SEQRES 17 A 313 SER PRO PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY SEQRES 18 A 313 ARG SER ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR SEQRES 19 A 313 ASP MET VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU SEQRES 20 A 313 GLU ILE ILE GLY GLY GLN VAL PHE PHE ARG GLN ARG VAL SEQRES 21 A 313 SER SEP GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA SEQRES 22 A 313 LEU ARG PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN SEQRES 23 A 313 ASN HIS PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU SEQRES 24 A 313 THR ALA GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SEQRES 25 A 313 SER SEQRES 1 B 14 ALA ARG LYS ARG ARG ARG HIS PRO SER GLY PRO PRO THR SEQRES 2 B 14 ALA MODRES 8R25 SEP A 261 SER MODIFIED RESIDUE HET SEP A 261 10 HET GOL A 401 6 HET XJL A 402 21 HETNAM SEP PHOSPHOSERINE HETNAM GOL GLYCEROL HETNAM XJL 4-(5-(4-AMINOPHENYL)-1H-PYRAZOL-1-YL)BENZOIC ACID HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN XJL 4-[5-(4-AMINOPHENYL)PYRAZOL-1-YL]BENZOIC ACID FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 GOL C3 H8 O3 FORMUL 4 XJL C16 H13 N3 O2 FORMUL 5 HOH *102(H2 O) HELIX 1 AA1 PRO A 33 GLN A 37 1 5 HELIX 2 AA2 ASP A 72 ILE A 74 5 3 HELIX 3 AA3 MET A 88 SER A 97 1 10 HELIX 4 AA4 LEU A 129 GLY A 137 1 9 HELIX 5 AA5 GLN A 140 CYS A 161 1 22 HELIX 6 AA6 LYS A 169 GLU A 171 5 3 HELIX 7 AA7 THR A 204 SER A 208 5 5 HELIX 8 AA8 PRO A 209 HIS A 216 1 8 HELIX 9 AA9 HIS A 219 GLY A 238 1 20 HELIX 10 AB1 HIS A 244 GLY A 251 1 8 HELIX 11 AB2 SER A 260 LEU A 271 1 12 HELIX 12 AB3 ARG A 274 ARG A 278 5 5 HELIX 13 AB4 THR A 280 ASN A 286 1 7 HELIX 14 AB5 HIS A 287 GLN A 291 5 5 HELIX 15 AB6 LEU A 295 LEU A 304 1 10 SHEET 1 AA1 5 TYR A 38 GLY A 47 0 SHEET 2 AA1 5 GLY A 50 ARG A 57 -1 O SER A 54 N GLY A 41 SHEET 3 AA1 5 PRO A 63 GLU A 70 -1 O ILE A 66 N TYR A 53 SHEET 4 AA1 5 SER A 115 GLU A 121 -1 O LEU A 118 N LYS A 67 SHEET 5 AA1 5 LEU A 106 ARG A 112 -1 N LEU A 107 O ILE A 119 SHEET 1 AA2 2 TRP A 77 GLU A 79 0 SHEET 2 AA2 2 ARG A 85 PRO A 87 -1 O VAL A 86 N GLY A 78 SHEET 1 AA3 3 VAL A 126 ASP A 128 0 SHEET 2 AA3 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 AA3 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 AA4 2 VAL A 163 LEU A 164 0 SHEET 2 AA4 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 LINK C SER A 260 N SEP A 261 1555 1555 1.33 LINK C SEP A 261 N GLU A 262 1555 1555 1.33 CISPEP 1 GLU A 124 PRO A 125 0 -5.83 CRYST1 98.352 98.352 80.228 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010168 0.005870 0.000000 0.00000 SCALE2 0.000000 0.011740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012464 0.00000 CONECT 1758 1762 CONECT 1762 1758 1763 CONECT 1763 1762 1764 1766 CONECT 1764 1763 1765 CONECT 1765 1764 1768 CONECT 1766 1763 1767 1772 CONECT 1767 1766 CONECT 1768 1765 1769 1770 1771 CONECT 1769 1768 CONECT 1770 1768 CONECT 1771 1768 CONECT 1772 1766 CONECT 2215 2216 2217 CONECT 2216 2215 CONECT 2217 2215 2218 2219 CONECT 2218 2217 CONECT 2219 2217 2220 CONECT 2220 2219 CONECT 2221 2229 2239 CONECT 2222 2233 2235 CONECT 2223 2231 CONECT 2224 2225 2233 CONECT 2225 2224 2237 CONECT 2226 2227 2229 CONECT 2227 2226 2230 2239 CONECT 2228 2231 2234 CONECT 2229 2221 2226 CONECT 2230 2227 2232 2234 CONECT 2231 2223 2228 2236 CONECT 2232 2230 2236 CONECT 2233 2222 2224 2240 CONECT 2234 2228 2230 CONECT 2235 2222 2237 CONECT 2236 2231 2232 CONECT 2237 2225 2235 2239 CONECT 2238 2240 CONECT 2239 2221 2227 2237 CONECT 2240 2233 2238 2241 CONECT 2241 2240 MASTER 425 0 3 15 12 0 0 6 2341 2 39 27 END