HEADER CELL ADHESION 14-NOV-23 8R4P TITLE STRUCTURE OF BABA FROM HELICOBACTER PYLORI STRAIN 17875 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESIN BINDING FUCOSYLATED HISTO-BLOOD GROUP ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 STRAIN: 17875; SOURCE 5 GENE: BABA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ADHESIN, LECTIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.PERSSON,T.BOREN,J.BUGAYTSOVA REVDAT 1 20-NOV-24 8R4P 0 JRNL AUTH K.PERSSON,T.BOREN,J.BUGAYTSOVA JRNL TITL STRUCTURE OF BABA FROM HELICOBACTER PYLORI STRAIN 17875 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 35794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6400 - 4.7000 0.95 2703 144 0.2089 0.2433 REMARK 3 2 4.7000 - 3.7300 0.97 2615 137 0.1729 0.2055 REMARK 3 3 3.7300 - 3.2600 0.98 2629 140 0.1983 0.2283 REMARK 3 4 3.2600 - 2.9600 0.99 2631 136 0.2157 0.2512 REMARK 3 5 2.9600 - 2.7500 0.98 2619 138 0.2139 0.2736 REMARK 3 6 2.7500 - 2.5900 0.96 2548 132 0.2202 0.2618 REMARK 3 7 2.5900 - 2.4600 0.99 2618 136 0.2260 0.2527 REMARK 3 8 2.4600 - 2.3500 0.99 2606 135 0.2160 0.2471 REMARK 3 9 2.3500 - 2.2600 1.00 2615 136 0.2279 0.2746 REMARK 3 10 2.2600 - 2.1800 1.00 2617 135 0.2453 0.2739 REMARK 3 11 2.1800 - 2.1100 1.00 2582 138 0.2523 0.3086 REMARK 3 12 2.1100 - 2.0500 1.00 2610 140 0.2744 0.3440 REMARK 3 13 2.0500 - 2.0000 1.00 2618 136 0.2712 0.2858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3660 REMARK 3 ANGLE : 0.461 4982 REMARK 3 CHIRALITY : 0.035 584 REMARK 3 PLANARITY : 0.002 662 REMARK 3 DIHEDRAL : 4.086 506 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292133063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35796 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07556 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.96250 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CADMIUM CHLORIDE 0.1 M SODIUM REMARK 280 ACETATE PH 4.6 30% (V/V) PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.80650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.70400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.47650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.70400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.80650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.47650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 LYS A -20 REMARK 465 TYR A -19 REMARK 465 LEU A -18 REMARK 465 LEU A -17 REMARK 465 PRO A -16 REMARK 465 THR A -15 REMARK 465 ALA A -14 REMARK 465 ALA A -13 REMARK 465 ALA A -12 REMARK 465 GLY A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 ALA A -6 REMARK 465 ALA A -5 REMARK 465 GLN A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 1 REMARK 465 ASP A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 PHE A 5 REMARK 465 TYR A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 VAL A 9 REMARK 465 GLY A 10 REMARK 465 TYR A 11 REMARK 465 GLN A 12 REMARK 465 ILE A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 GLN A 18 REMARK 465 MET A 19 REMARK 465 VAL A 20 REMARK 465 THR A 21 REMARK 465 ASN A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 GLY A 25 REMARK 465 THR A 283 REMARK 465 ASN A 284 REMARK 465 LYS A 285 REMARK 465 SER A 286 REMARK 465 GLY A 287 REMARK 465 GLY A 288 REMARK 465 PRO A 289 REMARK 465 GLN A 290 REMARK 465 MET A 291 REMARK 465 GLU A 292 REMARK 465 PRO A 293 REMARK 465 LYS A 398 REMARK 465 SER A 399 REMARK 465 THR A 400 REMARK 465 ALA A 401 REMARK 465 GLY A 402 REMARK 465 THR A 403 REMARK 465 SER A 404 REMARK 465 GLY A 405 REMARK 465 THR A 406 REMARK 465 GLN A 407 REMARK 465 GLY A 408 REMARK 465 LYS A 525 REMARK 465 LYS A 526 REMARK 465 LYS A 527 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 LYS A 530 REMARK 465 GLY A 531 REMARK 465 SER A 532 REMARK 465 GLU A 533 REMARK 465 GLN A 534 REMARK 465 LYS A 535 REMARK 465 LEU A 536 REMARK 465 ILE A 537 REMARK 465 SER A 538 REMARK 465 GLU A 539 REMARK 465 GLU A 540 REMARK 465 ASP A 541 REMARK 465 LEU A 542 REMARK 465 SER A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 451 CD GLU A 451 OE1 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 337 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 ASN A 397 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -71.68 -113.38 REMARK 500 SER A 117 51.21 -155.49 REMARK 500 SER A 136 32.39 -144.12 REMARK 500 TYR A 145 16.66 59.34 REMARK 500 VAL A 204 -99.55 -82.89 REMARK 500 SER A 205 -96.03 -177.67 REMARK 500 ALA A 236 133.72 178.31 REMARK 500 SER A 244 113.92 -30.89 REMARK 500 HIS A 328 58.28 -143.95 REMARK 500 ASN A 337 10.22 -140.52 REMARK 500 PHE A 391 -58.62 -136.71 REMARK 500 ALA A 393 36.06 -88.84 REMARK 500 CYS A 395 99.92 -167.61 REMARK 500 ASN A 483 72.02 61.19 REMARK 500 SER A 486 -53.34 -132.72 REMARK 500 TYR A 498 36.72 -88.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 905 DISTANCE = 6.16 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 601 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 GLU A 34 OE1 81.2 REMARK 620 3 GLU A 34 OE2 84.2 51.5 REMARK 620 4 GLU A 151 OE1 170.5 92.7 86.2 REMARK 620 5 GLU A 151 OE2 169.4 92.3 85.2 1.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 602 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 72 OD1 REMARK 620 2 ASP A 76 OD2 80.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 603 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 176 OE1 REMARK 620 2 THR A 431 OG1 13.3 REMARK 620 3 HOH A 789 O 143.1 156.3 REMARK 620 N 1 2 DBREF 8R4P A 1 524 UNP O52269 O52269_HELPX 21 544 SEQADV 8R4P MET A -21 UNP O52269 INITIATING METHIONINE SEQADV 8R4P LYS A -20 UNP O52269 EXPRESSION TAG SEQADV 8R4P TYR A -19 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A -18 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A -17 UNP O52269 EXPRESSION TAG SEQADV 8R4P PRO A -16 UNP O52269 EXPRESSION TAG SEQADV 8R4P THR A -15 UNP O52269 EXPRESSION TAG SEQADV 8R4P ALA A -14 UNP O52269 EXPRESSION TAG SEQADV 8R4P ALA A -13 UNP O52269 EXPRESSION TAG SEQADV 8R4P ALA A -12 UNP O52269 EXPRESSION TAG SEQADV 8R4P GLY A -11 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A -10 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A -9 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A -8 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A -7 UNP O52269 EXPRESSION TAG SEQADV 8R4P ALA A -6 UNP O52269 EXPRESSION TAG SEQADV 8R4P ALA A -5 UNP O52269 EXPRESSION TAG SEQADV 8R4P GLN A -4 UNP O52269 EXPRESSION TAG SEQADV 8R4P PRO A -3 UNP O52269 EXPRESSION TAG SEQADV 8R4P ALA A -2 UNP O52269 EXPRESSION TAG SEQADV 8R4P MET A -1 UNP O52269 EXPRESSION TAG SEQADV 8R4P ALA A 0 UNP O52269 EXPRESSION TAG SEQADV 8R4P LYS A 525 UNP O52269 EXPRESSION TAG SEQADV 8R4P LYS A 526 UNP O52269 EXPRESSION TAG SEQADV 8R4P LYS A 527 UNP O52269 EXPRESSION TAG SEQADV 8R4P LYS A 528 UNP O52269 EXPRESSION TAG SEQADV 8R4P LYS A 529 UNP O52269 EXPRESSION TAG SEQADV 8R4P LYS A 530 UNP O52269 EXPRESSION TAG SEQADV 8R4P GLY A 531 UNP O52269 EXPRESSION TAG SEQADV 8R4P SER A 532 UNP O52269 EXPRESSION TAG SEQADV 8R4P GLU A 533 UNP O52269 EXPRESSION TAG SEQADV 8R4P GLN A 534 UNP O52269 EXPRESSION TAG SEQADV 8R4P LYS A 535 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A 536 UNP O52269 EXPRESSION TAG SEQADV 8R4P ILE A 537 UNP O52269 EXPRESSION TAG SEQADV 8R4P SER A 538 UNP O52269 EXPRESSION TAG SEQADV 8R4P GLU A 539 UNP O52269 EXPRESSION TAG SEQADV 8R4P GLU A 540 UNP O52269 EXPRESSION TAG SEQADV 8R4P ASP A 541 UNP O52269 EXPRESSION TAG SEQADV 8R4P LEU A 542 UNP O52269 EXPRESSION TAG SEQADV 8R4P SER A 543 UNP O52269 EXPRESSION TAG SEQADV 8R4P HIS A 544 UNP O52269 EXPRESSION TAG SEQADV 8R4P HIS A 545 UNP O52269 EXPRESSION TAG SEQADV 8R4P HIS A 546 UNP O52269 EXPRESSION TAG SEQADV 8R4P HIS A 547 UNP O52269 EXPRESSION TAG SEQADV 8R4P HIS A 548 UNP O52269 EXPRESSION TAG SEQADV 8R4P HIS A 549 UNP O52269 EXPRESSION TAG SEQRES 1 A 571 MET LYS TYR LEU LEU PRO THR ALA ALA ALA GLY LEU LEU SEQRES 2 A 571 LEU LEU ALA ALA GLN PRO ALA MET ALA GLU ASP ASP GLY SEQRES 3 A 571 PHE TYR THR SER VAL GLY TYR GLN ILE GLY GLU ALA ALA SEQRES 4 A 571 GLN MET VAL THR ASN THR LYS GLY ILE GLN ASP LEU SER SEQRES 5 A 571 ASP ASN TYR GLU ASN LEU SER LYS LEU LEU THR ARG TYR SEQRES 6 A 571 SER THR LEU ASN THR LEU ILE LYS LEU SER ALA ASP PRO SEQRES 7 A 571 SER ALA ILE ASN ALA ALA ARG GLU ASN LEU GLY ALA SER SEQRES 8 A 571 ALA LYS ASN LEU ILE GLY ASP THR LYS ASN SER PRO ALA SEQRES 9 A 571 TYR GLN ALA VAL LEU LEU ALA ILE ASN ALA ALA VAL GLY SEQRES 10 A 571 PHE TRP ASN VAL LEU GLY TYR ALA THR GLN CYS GLY GLY SEQRES 11 A 571 ASN ALA ASN GLY GLN GLU SER THR SER SER THR THR ILE SEQRES 12 A 571 PHE ASN ASN GLU PRO GLY TYR ARG SER THR SER ILE THR SEQRES 13 A 571 CYS SER LEU ASN ARG TYR LYS PRO GLY TYR TYR GLY PRO SEQRES 14 A 571 MET SER ILE GLU ASN PHE LYS LYS LEU ASN GLU ALA TYR SEQRES 15 A 571 GLN ILE LEU GLN THR ALA LEU ASN LYS GLY LEU PRO ALA SEQRES 16 A 571 LEU LYS GLU ASN ASN GLY THR VAL SER VAL THR TYR THR SEQRES 17 A 571 TYR THR CYS SER GLY GLU GLY ASN ASP ASN CYS SER LYS SEQRES 18 A 571 LYS ALA THR GLY VAL SER ASP GLN ASN GLY GLY THR LYS SEQRES 19 A 571 THR LYS THR GLN THR ILE ASP GLY LYS THR VAL THR THR SEQRES 20 A 571 THR ILE SER SER LYS VAL VAL ASP SER GLN ALA LYS GLY SEQRES 21 A 571 ASN THR THR ARG VAL SER TYR THR GLU ILE THR ASN LYS SEQRES 22 A 571 LEU ASP GLY VAL PRO ASP SER ALA GLN ALA LEU LEU ALA SEQRES 23 A 571 GLN ALA SER THR LEU ILE ASN THR ILE ASN THR ALA CYS SEQRES 24 A 571 PRO TYR PHE SER VAL THR ASN LYS SER GLY GLY PRO GLN SEQRES 25 A 571 MET GLU PRO THR ARG GLY LYS LEU CYS GLY PHE THR GLU SEQRES 26 A 571 GLU ILE SER ALA ILE GLN LYS MET ILE THR ASP ALA GLN SEQRES 27 A 571 GLU LEU VAL ASN GLN THR SER VAL ILE ASN GLU HIS GLU SEQRES 28 A 571 GLN SER THR PRO VAL GLY GLY ASN ASN GLY LYS PRO PHE SEQRES 29 A 571 ASN PRO PHE THR ASP ALA SER PHE ALA GLN GLY MET LEU SEQRES 30 A 571 ALA ASN ALA SER ALA GLN ALA LYS MET LEU ASN LEU ALA SEQRES 31 A 571 HIS GLN VAL GLY GLN THR ILE ASN PRO ASP ASN LEU THR SEQRES 32 A 571 GLY THR PHE LYS ASN PHE VAL THR GLY PHE LEU ALA THR SEQRES 33 A 571 CYS ASN ASN LYS SER THR ALA GLY THR SER GLY THR GLN SEQRES 34 A 571 GLY SER PRO PRO GLY THR VAL THR THR GLN THR PHE ALA SEQRES 35 A 571 SER GLY CYS ALA TYR VAL GLU GLN THR ILE THR ASN LEU SEQRES 36 A 571 ASN ASN SER ILE ALA HIS PHE GLY THR GLN GLU GLN GLN SEQRES 37 A 571 ILE GLN GLN ALA GLU ASN ILE ALA ASP THR LEU VAL ASN SEQRES 38 A 571 PHE LYS SER ARG TYR SER GLU LEU GLY ASN THR TYR ASN SEQRES 39 A 571 SER ILE THR THR ALA LEU SER LYS VAL PRO ASN ALA GLN SEQRES 40 A 571 SER LEU GLN ASN VAL VAL GLY LYS LYS ASN ASN PRO TYR SEQRES 41 A 571 SER PRO GLN GLY ILE GLU THR ASN TYR TYR LEU ASN GLN SEQRES 42 A 571 ASN SER TYR ASN GLN ILE GLN THR ILE ASN GLN GLU LEU SEQRES 43 A 571 LYS LYS LYS LYS LYS LYS GLY SER GLU GLN LYS LEU ILE SEQRES 44 A 571 SER GLU GLU ASP LEU SER HIS HIS HIS HIS HIS HIS HET CD A 601 1 HET CD A 602 1 HET CD A 603 1 HET CD A 604 1 HET CD A 605 1 HET CD A 606 1 HET CD A 607 1 HET CD A 608 1 HET CD A 609 1 HET CD A 610 1 HETNAM CD CADMIUM ION FORMUL 2 CD 10(CD 2+) FORMUL 12 HOH *205(H2 O) HELIX 1 AA1 ILE A 26 ASP A 28 5 3 HELIX 2 AA2 LEU A 29 ALA A 54 1 26 HELIX 3 AA3 ASP A 55 ASP A 76 1 22 HELIX 4 AA4 SER A 80 GLY A 101 1 22 HELIX 5 AA5 TYR A 102 THR A 104 5 3 HELIX 6 AA6 ASN A 109 GLN A 113 5 5 HELIX 7 AA7 SER A 149 GLY A 170 1 22 HELIX 8 AA8 SER A 198 GLY A 203 1 6 HELIX 9 AA9 SER A 258 CYS A 277 1 20 HELIX 10 AB1 PHE A 301 GLU A 327 1 27 HELIX 11 AB2 PHE A 350 ASN A 376 1 27 HELIX 12 AB3 PRO A 377 LEU A 380 5 4 HELIX 13 AB4 THR A 381 PHE A 391 1 11 HELIX 14 AB5 TYR A 425 PHE A 440 1 16 HELIX 15 AB6 PHE A 440 ASN A 459 1 20 HELIX 16 AB7 ASN A 459 SER A 479 1 21 HELIX 17 AB8 LEU A 487 ASN A 489 5 3 HELIX 18 AB9 ASN A 510 LEU A 524 1 15 SHEET 1 AA1 6 SER A 130 CYS A 135 0 SHEET 2 AA1 6 THR A 119 GLY A 127 -1 N THR A 120 O CYS A 135 SHEET 3 AA1 6 THR A 180 SER A 190 -1 O SER A 190 N THR A 119 SHEET 4 AA1 6 TYR A 245 PRO A 256 -1 O LEU A 252 N VAL A 183 SHEET 5 AA1 6 LYS A 221 VAL A 232 -1 N THR A 224 O ASP A 253 SHEET 6 AA1 6 THR A 211 ILE A 218 -1 N LYS A 212 O ILE A 227 SHEET 1 AA2 2 TYR A 279 PHE A 280 0 SHEET 2 AA2 2 GLY A 296 LYS A 297 -1 O GLY A 296 N PHE A 280 SHEET 1 AA3 2 VAL A 491 ASN A 495 0 SHEET 2 AA3 2 THR A 505 LEU A 509 -1 O TYR A 508 N GLY A 492 SSBOND 1 CYS A 106 CYS A 135 1555 1555 2.03 SSBOND 2 CYS A 189 CYS A 197 1555 1555 1.91 SSBOND 3 CYS A 277 CYS A 299 1555 1555 2.03 SSBOND 4 CYS A 395 CYS A 423 1555 1555 2.04 LINK OD1 ASP A 31 CD CD A 601 1555 1555 2.44 LINK OE1 GLU A 34 CD CD A 601 1555 1555 2.43 LINK OE2 GLU A 34 CD CD A 601 1555 1555 2.54 LINK OD1 ASN A 72 CD CD A 602 1555 1555 2.67 LINK OD2 ASP A 76 CD CD A 602 1555 1555 2.48 LINK OE1 GLU A 151 CD CD A 601 1555 3656 2.68 LINK OE2 GLU A 151 CD CD A 601 1555 3656 2.68 LINK OE1 GLU A 176 CD CD A 603 1555 1555 2.61 LINK OG1 THR A 431 CD CD A 603 1555 4466 2.65 LINK CD CD A 603 O HOH A 789 1555 1555 2.66 LINK CD CD A 608 O HOH A 850 1555 1555 2.69 CISPEP 1 GLY A 335 GLY A 336 0 16.47 CRYST1 55.613 96.953 97.408 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010314 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010266 0.00000