HEADER PROTEIN TRANSPORT 01-AUG-25 8R4Y TITLE HOMOTRIMER FOR THE LUMENAL DOMAIN OF VACUOLAR SORTING RECEPTOR 1 TITLE 2 (VSR1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR-SORTING RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATVSR1,BP80-LIKE PROTEIN B,ATBP80B,EPIDERMAL GROWTH FACTOR COMPND 5 RECEPTOR-LIKE PROTEIN 1,ATELP,ATELP1,SPOT 3 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: VSR1, BP80B, ELP, ELP1, AT3G52850, F8J2.20; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS VACUOLAR SORTING RECEPTOR; MEMBRANE PROTEIN, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.J.BORGES,M.K.ELDAHSHOURY,J.NETTLESHIP,L.BIRD,J.AN,A.J.L.LEVADA, AUTHOR 2 N.SHAH,M.THOMSON,M.R.M.FONTES,R.OWENS,J.DENECKE,V.POSTIS,I.USON, AUTHOR 3 A.GOLDMAN,C.DE MARCOS LOUSA REVDAT 1 13-AUG-25 8R4Y 0 JRNL AUTH R.J.BORGES,M.K.ELDAHSHOURY,J.NETTLESHIP,L.BIRD,J.AN, JRNL AUTH 2 A.J.L.LEVADA,N.SHAH,M.THOMSON,M.R.M.FONTES,R.OWENS, JRNL AUTH 3 J.DENECKE,V.POSTIS,I.USON,A.GOLDMAN,C.DE MARCOS LOUSA JRNL TITL THE CRYSTAL STRUCTURE OF VACUOLAR SORTING RECEPTOR 1 (VSR1) JRNL TITL 2 LUMENAL DOMAIN REVEALS A STABLE DOMAIN-SWAPPED TRIMER AND A JRNL TITL 3 POTENTIAL NEW CARGO BINDING SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.257 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 602 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1600 - 5.5700 1.00 2954 156 0.2190 0.2468 REMARK 3 2 5.5700 - 4.4300 1.00 2845 150 0.2626 0.2453 REMARK 3 3 4.4200 - 3.8600 1.00 2847 150 0.3000 0.3049 REMARK 3 4 3.8600 - 3.5100 0.99 2784 146 0.3697 0.4341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.661 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.722 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 137.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 133.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3547 REMARK 3 ANGLE : 0.489 4811 REMARK 3 CHIRALITY : 0.042 549 REMARK 3 PLANARITY : 0.004 614 REMARK 3 DIHEDRAL : 10.550 1389 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-19; 28-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; DIAMOND REMARK 200 BEAMLINE : I03; I23 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796; 3.024 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M; DECTRIS REMARK 200 PILATUS 12M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20180409, XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS 20180409, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12055 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.510 REMARK 200 RESOLUTION RANGE LOW (A) : 49.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 28.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ARCIMBOLDO, PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.0, 20% V/V GLYCEROL REMARK 280 ETHOXYLATE, 10% V/V TETRAHYDROFURAN, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 70.73850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.73850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.73850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.73850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.73850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.73850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 70.73850 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 70.73850 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 70.73850 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 70.73850 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 70.73850 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 70.73850 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 70.73850 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 70.73850 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 70.73850 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 70.73850 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 70.73850 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 70.73850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 129 REMARK 465 THR A 130 REMARK 465 PRO A 131 REMARK 465 GLU A 132 REMARK 465 GLU A 133 REMARK 465 ASP A 134 REMARK 465 LYS A 135 REMARK 465 SER A 463 REMARK 465 GLY A 464 REMARK 465 ALA A 465 REMARK 465 LEU A 466 REMARK 465 HIS A 467 REMARK 465 CYS A 468 REMARK 465 GLY A 469 REMARK 465 ILE A 470 REMARK 465 ASN A 471 REMARK 465 ASN A 472 REMARK 465 GLY A 473 REMARK 465 GLY A 474 REMARK 465 CYS A 475 REMARK 465 TRP A 476 REMARK 465 ARG A 477 REMARK 465 GLU A 478 REMARK 465 SER A 479 REMARK 465 ARG A 480 REMARK 465 GLY A 481 REMARK 465 GLY A 482 REMARK 465 PHE A 483 REMARK 465 THR A 484 REMARK 465 TYR A 485 REMARK 465 SER A 486 REMARK 465 ALA A 487 REMARK 465 CYS A 488 REMARK 465 VAL A 489 REMARK 465 ASP A 490 REMARK 465 ASP A 491 REMARK 465 HIS A 492 REMARK 465 SER A 493 REMARK 465 LYS A 494 REMARK 465 ASP A 495 REMARK 465 CYS A 496 REMARK 465 LYS A 497 REMARK 465 CYS A 498 REMARK 465 PRO A 499 REMARK 465 LEU A 500 REMARK 465 GLY A 501 REMARK 465 PHE A 502 REMARK 465 LYS A 503 REMARK 465 GLY A 504 REMARK 465 ASP A 505 REMARK 465 GLY A 506 REMARK 465 VAL A 507 REMARK 465 LYS A 508 REMARK 465 ASN A 509 REMARK 465 CYS A 510 REMARK 465 GLU A 511 REMARK 465 ASP A 512 REMARK 465 VAL A 513 REMARK 465 ASP A 514 REMARK 465 GLU A 515 REMARK 465 CYS A 516 REMARK 465 LYS A 517 REMARK 465 GLU A 518 REMARK 465 LYS A 519 REMARK 465 THR A 520 REMARK 465 VAL A 521 REMARK 465 CYS A 522 REMARK 465 GLN A 523 REMARK 465 CYS A 524 REMARK 465 PRO A 525 REMARK 465 GLU A 526 REMARK 465 CYS A 527 REMARK 465 LYS A 528 REMARK 465 CYS A 529 REMARK 465 LYS A 530 REMARK 465 ASN A 531 REMARK 465 THR A 532 REMARK 465 TRP A 533 REMARK 465 GLY A 534 REMARK 465 SER A 535 REMARK 465 TYR A 536 REMARK 465 GLU A 537 REMARK 465 CYS A 538 REMARK 465 SER A 539 REMARK 465 CYS A 540 REMARK 465 SER A 541 REMARK 465 ASN A 542 REMARK 465 GLY A 543 REMARK 465 LEU A 544 REMARK 465 LEU A 545 REMARK 465 TYR A 546 REMARK 465 MET A 547 REMARK 465 ARG A 548 REMARK 465 GLU A 549 REMARK 465 HIS A 550 REMARK 465 ASP A 551 REMARK 465 THR A 552 REMARK 465 CYS A 553 REMARK 465 ILE A 554 REMARK 465 GLY A 555 REMARK 465 SER A 556 REMARK 465 GLY A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 GLY A 560 REMARK 465 THR A 561 REMARK 465 THR A 562 REMARK 465 LYS A 563 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 PHE A 47 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 125 CB CG CD1 CD2 REMARK 470 LEU A 406 CG CD1 CD2 REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 81 74.21 48.08 REMARK 500 ASP A 97 -11.88 70.91 REMARK 500 THR A 176 -41.11 71.26 REMARK 500 SER A 178 0.55 -69.15 REMARK 500 VAL A 179 83.61 56.81 REMARK 500 ARG A 185 -161.27 -127.32 REMARK 500 ALA A 258 143.68 -170.94 REMARK 500 GLN A 263 -2.07 67.91 REMARK 500 PHE A 265 -50.06 72.20 REMARK 500 ASP A 270 149.54 67.60 REMARK 500 LYS A 313 18.55 58.24 REMARK 500 LYS A 360 65.90 -107.71 REMARK 500 LEU A 406 48.69 -84.68 REMARK 500 ASN A 413 29.19 -141.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MAN A 601 DBREF 8R4Y A 20 563 UNP P93026 VSR1_ARATH 20 563 SEQRES 1 A 544 ARG PHE VAL VAL GLU LYS ASN ASN LEU LYS VAL THR SER SEQRES 2 A 544 PRO ASP SER ILE LYS GLY ILE TYR GLU CYS ALA ILE GLY SEQRES 3 A 544 ASN PHE GLY VAL PRO GLN TYR GLY GLY THR LEU VAL GLY SEQRES 4 A 544 THR VAL VAL TYR PRO LYS SER ASN GLN LYS ALA CYS LYS SEQRES 5 A 544 SER TYR SER ASP PHE ASP ILE SER PHE LYS SER LYS PRO SEQRES 6 A 544 GLY ARG LEU PRO THR PHE VAL LEU ILE ASP ARG GLY ASP SEQRES 7 A 544 CYS TYR PHE THR LEU LYS ALA TRP ILE ALA GLN GLN ALA SEQRES 8 A 544 GLY ALA ALA ALA ILE LEU VAL ALA ASP SER LYS ALA GLU SEQRES 9 A 544 PRO LEU ILE THR MET ASP THR PRO GLU GLU ASP LYS SER SEQRES 10 A 544 ASP ALA ASP TYR LEU GLN ASN ILE THR ILE PRO SER ALA SEQRES 11 A 544 LEU ILE THR LYS THR LEU GLY ASP SER ILE LYS SER ALA SEQRES 12 A 544 LEU SER GLY GLY ASP MET VAL ASN MET LYS LEU ASP TRP SEQRES 13 A 544 THR GLU SER VAL PRO HIS PRO ASP GLU ARG VAL GLU TYR SEQRES 14 A 544 GLU LEU TRP THR ASN SER ASN ASP GLU CYS GLY LYS LYS SEQRES 15 A 544 CYS ASP THR GLN ILE GLU PHE LEU LYS ASN PHE LYS GLY SEQRES 16 A 544 ALA ALA GLN ILE LEU GLU LYS GLY GLY HIS THR GLN PHE SEQRES 17 A 544 THR PRO HIS TYR ILE THR TRP TYR CYS PRO GLU ALA PHE SEQRES 18 A 544 THR LEU SER LYS GLN CYS LYS SER GLN CYS ILE ASN HIS SEQRES 19 A 544 GLY ARG TYR CYS ALA PRO ASP PRO GLU GLN ASP PHE THR SEQRES 20 A 544 LYS GLY TYR ASP GLY LYS ASP VAL VAL VAL GLN ASN LEU SEQRES 21 A 544 ARG GLN ALA CYS VAL TYR ARG VAL MET ASN ASP THR GLY SEQRES 22 A 544 LYS PRO TRP VAL TRP TRP ASP TYR VAL THR ASP PHE ALA SEQRES 23 A 544 ILE ARG CYS PRO MET LYS GLU LYS LYS TYR THR LYS GLU SEQRES 24 A 544 CYS ALA ASP GLY ILE ILE LYS SER LEU GLY ILE ASP LEU SEQRES 25 A 544 LYS LYS VAL ASP LYS CYS ILE GLY ASP PRO GLU ALA ASP SEQRES 26 A 544 VAL GLU ASN PRO VAL LEU LYS ALA GLU GLN GLU SER GLN SEQRES 27 A 544 ILE GLY LYS GLY SER ARG GLY ASP VAL THR ILE LEU PRO SEQRES 28 A 544 THR LEU VAL VAL ASN ASN ARG GLN TYR ARG GLY LYS LEU SEQRES 29 A 544 GLU LYS GLY ALA VAL LEU LYS ALA MET CYS SER GLY PHE SEQRES 30 A 544 GLN GLU SER THR GLU PRO ALA ILE CYS LEU THR GLU ASP SEQRES 31 A 544 LEU GLU THR ASN GLU CYS LEU GLU ASN ASN GLY GLY CYS SEQRES 32 A 544 TRP GLN ASP LYS ALA ALA ASN ILE THR ALA CYS ARG ASP SEQRES 33 A 544 THR PHE ARG GLY ARG LEU CYS GLU CYS PRO THR VAL GLN SEQRES 34 A 544 GLY VAL LYS PHE VAL GLY ASP GLY TYR THR HIS CYS LYS SEQRES 35 A 544 ALA SER GLY ALA LEU HIS CYS GLY ILE ASN ASN GLY GLY SEQRES 36 A 544 CYS TRP ARG GLU SER ARG GLY GLY PHE THR TYR SER ALA SEQRES 37 A 544 CYS VAL ASP ASP HIS SER LYS ASP CYS LYS CYS PRO LEU SEQRES 38 A 544 GLY PHE LYS GLY ASP GLY VAL LYS ASN CYS GLU ASP VAL SEQRES 39 A 544 ASP GLU CYS LYS GLU LYS THR VAL CYS GLN CYS PRO GLU SEQRES 40 A 544 CYS LYS CYS LYS ASN THR TRP GLY SER TYR GLU CYS SER SEQRES 41 A 544 CYS SER ASN GLY LEU LEU TYR MET ARG GLU HIS ASP THR SEQRES 42 A 544 CYS ILE GLY SER GLY LYS VAL GLY THR THR LYS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN A 601 11 HET NAG A 602 14 HET NAG A 603 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) HELIX 1 AA1 PRO A 33 LYS A 37 5 5 HELIX 2 AA2 TYR A 99 ALA A 110 1 12 HELIX 3 AA3 THR A 152 GLY A 165 1 14 HELIX 4 AA4 GLY A 199 GLY A 222 1 24 HELIX 5 AA5 PRO A 237 THR A 241 5 5 HELIX 6 AA6 SER A 243 GLN A 249 1 7 HELIX 7 AA7 TYR A 269 GLY A 292 1 24 HELIX 8 AA8 TRP A 295 CYS A 308 1 14 HELIX 9 AA9 THR A 316 LEU A 327 1 12 HELIX 10 AB1 ASP A 330 GLY A 339 1 10 HELIX 11 AB2 ASN A 347 GLN A 357 1 11 HELIX 12 AB3 GLU A 384 CYS A 393 1 10 HELIX 13 AB4 ASN A 413 CYS A 422 5 10 HELIX 14 AB5 LYS A 426 ASN A 429 5 4 SHEET 1 AA1 8 PHE A 21 SER A 32 0 SHEET 2 AA1 8 GLY A 38 GLY A 45 -1 O CYS A 42 N GLU A 24 SHEET 3 AA1 8 SER A 148 ILE A 151 -1 O LEU A 150 N ALA A 43 SHEET 4 AA1 8 ALA A 114 ALA A 118 1 N VAL A 117 O ILE A 151 SHEET 5 AA1 8 THR A 89 ASP A 94 1 N VAL A 91 O LEU A 116 SHEET 6 AA1 8 LEU A 56 VAL A 61 1 N THR A 59 O PHE A 90 SHEET 7 AA1 8 ASN A 170 LEU A 173 -1 O MET A 171 N GLY A 58 SHEET 8 AA1 8 PHE A 21 SER A 32 -1 N LYS A 29 O LYS A 172 SHEET 1 AA2 4 THR A 225 HIS A 230 0 SHEET 2 AA2 4 VAL A 186 TRP A 191 1 N LEU A 190 O HIS A 230 SHEET 3 AA2 4 THR A 371 VAL A 374 -1 O VAL A 373 N GLU A 189 SHEET 4 AA2 4 ARG A 377 TYR A 379 -1 O ARG A 377 N VAL A 374 SHEET 1 AA3 2 CYS A 250 ILE A 251 0 SHEET 2 AA3 2 TYR A 256 CYS A 257 -1 O TYR A 256 N ILE A 251 SHEET 1 AA4 2 GLN A 424 ASP A 425 0 SHEET 2 AA4 2 ILE A 430 THR A 431 -1 O ILE A 430 N ASP A 425 SHEET 1 AA5 2 CYS A 433 THR A 436 0 SHEET 2 AA5 2 GLY A 439 CYS A 442 -1 O LEU A 441 N ARG A 434 SHEET 1 AA6 2 THR A 446 VAL A 447 0 SHEET 2 AA6 2 VAL A 450 LYS A 451 -1 O VAL A 450 N VAL A 447 SSBOND 1 CYS A 70 CYS A 98 1555 1555 2.03 SSBOND 2 CYS A 198 CYS A 202 1555 1555 2.05 SSBOND 3 CYS A 236 CYS A 246 1555 1555 2.03 SSBOND 4 CYS A 250 CYS A 257 1555 1555 2.03 SSBOND 5 CYS A 283 CYS A 337 1555 1555 2.03 SSBOND 6 CYS A 308 CYS A 319 1555 1555 2.04 SSBOND 7 CYS A 393 CYS A 405 1555 1555 2.03 SSBOND 8 CYS A 415 CYS A 433 1555 1555 2.03 SSBOND 9 CYS A 422 CYS A 442 1555 1555 2.03 SSBOND 10 CYS A 444 CYS A 460 1555 1555 2.03 LINK ND2 ASN A 143 C1 NAG A 603 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 429 C1 NAG A 602 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 CISPEP 1 SER A 32 PRO A 33 0 0.19 CRYST1 141.477 141.477 141.477 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007068 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007068 0.00000 CONECT 373 600 CONECT 600 373 CONECT 885 3460 CONECT 1311 1341 CONECT 1341 1311 CONECT 1626 1706 CONECT 1627 1707 CONECT 1706 1626 CONECT 1707 1627 CONECT 1737 1796 CONECT 1796 1737 CONECT 1998 2447 CONECT 2051 3385 CONECT 2218 2314 CONECT 2314 2218 CONECT 2447 1998 CONECT 2868 2955 CONECT 2955 2868 CONECT 3027 3158 CONECT 3074 3235 CONECT 3132 3446 CONECT 3158 3027 CONECT 3235 3074 CONECT 3250 3369 CONECT 3369 3250 CONECT 3385 2051 3386 3396 CONECT 3386 3385 3387 3393 CONECT 3387 3386 3388 3394 CONECT 3388 3387 3389 3395 CONECT 3389 3388 3390 3396 CONECT 3390 3389 3397 CONECT 3391 3392 3393 3398 CONECT 3392 3391 CONECT 3393 3386 3391 CONECT 3394 3387 CONECT 3395 3388 3399 CONECT 3396 3385 3389 CONECT 3397 3390 CONECT 3398 3391 CONECT 3399 3395 3400 3410 CONECT 3400 3399 3401 3407 CONECT 3401 3400 3402 3408 CONECT 3402 3401 3403 3409 CONECT 3403 3402 3404 3410 CONECT 3404 3403 3411 CONECT 3405 3406 3407 3412 CONECT 3406 3405 CONECT 3407 3400 3405 CONECT 3408 3401 CONECT 3409 3402 3413 CONECT 3410 3399 3403 CONECT 3411 3404 CONECT 3412 3405 CONECT 3413 3409 3414 3422 CONECT 3414 3413 3415 3419 CONECT 3415 3414 3416 3420 CONECT 3416 3415 3417 3421 CONECT 3417 3416 3418 3422 CONECT 3418 3417 3423 CONECT 3419 3414 CONECT 3420 3415 3424 CONECT 3421 3416 CONECT 3422 3413 3417 CONECT 3423 3418 CONECT 3424 3420 3425 3433 CONECT 3425 3424 3426 3430 CONECT 3426 3425 3427 3431 CONECT 3427 3426 3428 3432 CONECT 3428 3427 3429 3433 CONECT 3429 3428 3434 CONECT 3430 3425 CONECT 3431 3426 CONECT 3432 3427 CONECT 3433 3424 3428 CONECT 3434 3429 CONECT 3435 3436 3444 CONECT 3436 3435 3437 3441 CONECT 3437 3436 3438 3442 CONECT 3438 3437 3439 3443 CONECT 3439 3438 3440 3444 CONECT 3440 3439 3445 CONECT 3441 3436 CONECT 3442 3437 CONECT 3443 3438 CONECT 3444 3435 3439 CONECT 3445 3440 CONECT 3446 3132 3447 3457 CONECT 3447 3446 3448 3454 CONECT 3448 3447 3449 3455 CONECT 3449 3448 3450 3456 CONECT 3450 3449 3451 3457 CONECT 3451 3450 3458 CONECT 3452 3453 3454 3459 CONECT 3453 3452 CONECT 3454 3447 3452 CONECT 3455 3448 CONECT 3456 3449 CONECT 3457 3446 3450 CONECT 3458 3451 CONECT 3459 3452 CONECT 3460 885 3461 3471 CONECT 3461 3460 3462 3468 CONECT 3462 3461 3463 3469 CONECT 3463 3462 3464 3470 CONECT 3464 3463 3465 3471 CONECT 3465 3464 3472 CONECT 3466 3467 3468 3473 CONECT 3467 3466 CONECT 3468 3461 3466 CONECT 3469 3462 CONECT 3470 3463 CONECT 3471 3460 3464 CONECT 3472 3465 CONECT 3473 3466 MASTER 400 0 7 14 20 0 0 6 3454 1 114 42 END