HEADER TRANSFERASE 15-NOV-23 8R53 TITLE THE COMPLEX OF GLYCOGEN PHOSPHORYLASE WITH (-)-EPIGALLOCATECHIN-3- TITLE 2 GALLATE (EGCG) AND GLUCOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOGEN PHOSPHORYLASE, MUSCLE FORM; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYOPHOSPHORYLASE; COMPND 5 EC: 2.4.1.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986 KEYWDS GLYCOGEN PHOSPHORYLASE, GLUCOSE, EPIGALLOCATECHIN-3-GALLATE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ALEXOPOULOS,S.PAPAKOSTOPOULOU,M.S.KOULAS,D.D.LEONIDAS,V.SKAMNAKI REVDAT 2 13-NOV-24 8R53 1 JRNL REVDAT 1 30-OCT-24 8R53 0 JRNL AUTH S.ALEXOPOULOS,M.MCGAWLEY,R.MATHEWS,S.PAPAKOSTOPOULOU, JRNL AUTH 2 S.KOULAS,D.D.LEONIDAS,T.ZWAIN,J.M.HAYES,V.SKAMNAKI JRNL TITL EVIDENCE FOR THE QUERCETIN BINDING SITE OF GLYCOGEN JRNL TITL 2 PHOSPHORYLASE AS A TARGET FOR LIVER-ISOFORM-SELECTIVE JRNL TITL 3 INHIBITORS AGAINST GLIOBLASTOMA: INVESTIGATION OF FLAVANOLS JRNL TITL 4 EPIGALLOCATECHIN GALLATE AND EPIGALLOCATECHIN. JRNL REF J.AGRIC.FOOD CHEM. V. 72 24070 2024 JRNL REFN ESSN 1520-5118 JRNL PMID 39433280 JRNL DOI 10.1021/ACS.JAFC.4C06920 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3142 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 230 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6649 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 149 REMARK 3 SOLVENT ATOMS : 821 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.161 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6966 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6691 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9408 ; 1.587 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15294 ; 1.380 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 822 ; 6.766 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 416 ;32.071 ;21.394 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1199 ;13.965 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;19.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 866 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7805 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1700 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3273 ; 2.328 ; 2.690 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3272 ; 2.328 ; 2.688 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4091 ; 3.178 ; 4.018 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4092 ; 3.178 ; 4.020 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3693 ; 3.432 ; 3.135 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3689 ; 3.422 ; 3.130 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5315 ; 4.800 ; 4.538 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8272 ; 6.736 ;32.759 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8273 ; 6.735 ;32.760 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8R53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292133424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 126.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0267 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM BES BUFFER, PH 6.7, BATCH MODE, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.61600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 63.09150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.09150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.42400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.09150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 63.09150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.80800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.09150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.09150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.42400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 63.09150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.09150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.80800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.61600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 115.23200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1151 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1393 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1474 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1534 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1682 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1752 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1802 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1805 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1821 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 253 REMARK 465 LEU A 254 REMARK 465 LYS A 255 REMARK 465 ASP A 256 REMARK 465 PHE A 257 REMARK 465 ASN A 258 REMARK 465 VAL A 259 REMARK 465 PHE A 316 REMARK 465 GLY A 317 REMARK 465 CYS A 318 REMARK 465 ARG A 319 REMARK 465 ASP A 320 REMARK 465 PRO A 321 REMARK 465 VAL A 322 REMARK 465 ARG A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 129 85.49 -68.22 REMARK 500 LEU A 131 38.95 -88.62 REMARK 500 TYR A 203 -132.83 66.90 REMARK 500 THR A 209 -146.65 -131.43 REMARK 500 PRO A 281 30.34 -82.71 REMARK 500 SER A 313 40.10 -95.25 REMARK 500 SER A 313 40.31 -95.41 REMARK 500 ASP A 339 -173.36 66.50 REMARK 500 THR A 466 -95.69 -121.31 REMARK 500 ARG A 489 -73.55 -69.53 REMARK 500 LEU A 492 -57.46 -145.41 REMARK 500 ASP A 514 65.46 -154.35 REMARK 500 TYR A 553 11.45 -142.90 REMARK 500 LYS A 568 164.49 171.19 REMARK 500 SER A 674 -59.77 -137.52 REMARK 500 SER A 751 55.77 -159.74 REMARK 500 ILE A 824 -55.03 -121.00 REMARK 500 PRO A 835 -179.30 -69.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1819 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A1820 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH A1821 DISTANCE = 6.72 ANGSTROMS DBREF 8R53 A 7 836 UNP P00489 PYGM_RABIT 8 837 SEQADV 8R53 ILE A 380 UNP P00489 LEU 381 VARIANT SEQRES 1 A 830 GLN GLU LYS ARG LYS GLN ILE SER VAL ARG GLY LEU ALA SEQRES 2 A 830 GLY VAL GLU ASN VAL THR GLU LEU LYS LYS ASN PHE ASN SEQRES 3 A 830 ARG HIS LEU HIS PHE THR LEU VAL LYS ASP ARG ASN VAL SEQRES 4 A 830 ALA THR PRO ARG ASP TYR TYR PHE ALA LEU ALA HIS THR SEQRES 5 A 830 VAL ARG ASP HIS LEU VAL GLY ARG TRP ILE ARG THR GLN SEQRES 6 A 830 GLN HIS TYR TYR GLU LYS ASP PRO LYS ARG ILE TYR TYR SEQRES 7 A 830 LEU SER LEU GLU PHE TYR MET GLY ARG THR LEU GLN ASN SEQRES 8 A 830 THR MET VAL ASN LEU ALA LEU GLU ASN ALA CYS ASP GLU SEQRES 9 A 830 ALA THR TYR GLN LEU GLY LEU ASP MET GLU GLU LEU GLU SEQRES 10 A 830 GLU ILE GLU GLU ASP ALA GLY LEU GLY ASN GLY GLY LEU SEQRES 11 A 830 GLY ARG LEU ALA ALA CYS PHE LEU ASP SER MET ALA THR SEQRES 12 A 830 LEU GLY LEU ALA ALA TYR GLY TYR GLY ILE ARG TYR GLU SEQRES 13 A 830 PHE GLY ILE PHE ASN GLN LYS ILE CSO GLY GLY TRP GLN SEQRES 14 A 830 MET GLU GLU ALA ASP ASP TRP LEU ARG TYR GLY ASN PRO SEQRES 15 A 830 TRP GLU LYS ALA ARG PRO GLU PHE THR LEU PRO VAL HIS SEQRES 16 A 830 PHE TYR GLY ARG VAL GLU HIS THR SER GLN GLY ALA LYS SEQRES 17 A 830 TRP VAL ASP THR GLN VAL VAL LEU ALA MET PRO TYR ASP SEQRES 18 A 830 THR PRO VAL PRO GLY TYR ARG ASN ASN VAL VAL ASN THR SEQRES 19 A 830 MET ARG LEU TRP SER ALA LYS ALA PRO ASN ASP PHE ASN SEQRES 20 A 830 LEU LYS ASP PHE ASN VAL GLY GLY TYR ILE GLN ALA VAL SEQRES 21 A 830 LEU ASP ARG ASN LEU ALA GLU ASN ILE SER ARG VAL LEU SEQRES 22 A 830 TYR PRO ASN ASP ASN PHE PHE GLU GLY LYS GLU LEU ARG SEQRES 23 A 830 LEU LYS GLN GLU TYR PHE VAL VAL ALA ALA THR LEU GLN SEQRES 24 A 830 ASP ILE ILE ARG ARG PHE LYS SER SER LYS PHE GLY CYS SEQRES 25 A 830 ARG ASP PRO VAL ARG THR ASN PHE ASP ALA PHE PRO ASP SEQRES 26 A 830 LYS VAL ALA ILE GLN LEU ASN ASP THR HIS PRO SER LEU SEQRES 27 A 830 ALA ILE PRO GLU LEU MET ARG VAL LEU VAL ASP LEU GLU SEQRES 28 A 830 ARG LEU ASP TRP ASP LYS ALA TRP GLU VAL THR VAL LYS SEQRES 29 A 830 THR CYS ALA TYR THR ASN HIS THR VAL ILE PRO GLU ALA SEQRES 30 A 830 LEU GLU ARG TRP PRO VAL HIS LEU LEU GLU THR LEU LEU SEQRES 31 A 830 PRO ARG HIS LEU GLN ILE ILE TYR GLU ILE ASN GLN ARG SEQRES 32 A 830 PHE LEU ASN ARG VAL ALA ALA ALA PHE PRO GLY ASP VAL SEQRES 33 A 830 ASP ARG LEU ARG ARG MET SER LEU VAL GLU GLU GLY ALA SEQRES 34 A 830 VAL LYS ARG ILE ASN MET ALA HIS LEU CYS ILE ALA GLY SEQRES 35 A 830 SER HIS ALA VAL ASN GLY VAL ALA ARG ILE HIS SER GLU SEQRES 36 A 830 ILE LEU LYS LYS THR ILE PHE LYS ASP PHE TYR GLU LEU SEQRES 37 A 830 GLU PRO HIS LYS PHE GLN ASN LYS THR ASN GLY ILE THR SEQRES 38 A 830 PRO ARG ARG TRP LEU VAL LEU CYS ASN PRO GLY LEU ALA SEQRES 39 A 830 GLU ILE ILE ALA GLU ARG ILE GLY GLU GLU TYR ILE SER SEQRES 40 A 830 ASP LEU ASP GLN LEU ARG LYS LEU LEU SER TYR VAL ASP SEQRES 41 A 830 ASP GLU ALA PHE ILE ARG ASP VAL ALA LYS VAL LYS GLN SEQRES 42 A 830 GLU ASN LYS LEU LYS PHE ALA ALA TYR LEU GLU ARG GLU SEQRES 43 A 830 TYR LYS VAL HIS ILE ASN PRO ASN SER LEU PHE ASP VAL SEQRES 44 A 830 GLN VAL LYS ARG ILE HIS GLU TYR LYS ARG GLN LEU LEU SEQRES 45 A 830 ASN CYS LEU HIS VAL ILE THR LEU TYR ASN ARG ILE LYS SEQRES 46 A 830 LYS GLU PRO ASN LYS PHE VAL VAL PRO ARG THR VAL MET SEQRES 47 A 830 ILE GLY GLY LYS ALA ALA PRO GLY TYR HIS MET ALA LYS SEQRES 48 A 830 MET ILE ILE LYS LEU ILE THR ALA ILE GLY ASP VAL VAL SEQRES 49 A 830 ASN HIS ASP PRO VAL VAL GLY ASP ARG LEU ARG VAL ILE SEQRES 50 A 830 PHE LEU GLU ASN TYR ARG VAL SER LEU ALA GLU LYS VAL SEQRES 51 A 830 ILE PRO ALA ALA ASP LEU SER GLU GLN ILE SER THR ALA SEQRES 52 A 830 GLY THR GLU ALA SER GLY THR GLY ASN MET LLP PHE MET SEQRES 53 A 830 LEU ASN GLY ALA LEU THR ILE GLY THR MET ASP GLY ALA SEQRES 54 A 830 ASN VAL GLU MET ALA GLU GLU ALA GLY GLU GLU ASN PHE SEQRES 55 A 830 PHE ILE PHE GLY MET ARG VAL GLU ASP VAL ASP ARG LEU SEQRES 56 A 830 ASP GLN ARG GLY TYR ASN ALA GLN GLU TYR TYR ASP ARG SEQRES 57 A 830 ILE PRO GLU LEU ARG GLN ILE ILE GLU GLN LEU SER SER SEQRES 58 A 830 GLY PHE PHE SER PRO LYS GLN PRO ASP LEU PHE LYS ASP SEQRES 59 A 830 ILE VAL ASN MET LEU MET HIS HIS ASP ARG PHE LYS VAL SEQRES 60 A 830 PHE ALA ASP TYR GLU GLU TYR VAL LYS CYS GLN GLU ARG SEQRES 61 A 830 VAL SER ALA LEU TYR LYS ASN PRO ARG GLU TRP THR ARG SEQRES 62 A 830 MET VAL ILE ARG ASN ILE ALA THR SER GLY LYS PHE SER SEQRES 63 A 830 SER ASP ARG THR ILE ALA GLN TYR ALA ARG GLU ILE TRP SEQRES 64 A 830 GLY VAL GLU PRO SER ARG GLN ARG LEU PRO ALA MODRES 8R53 CSO A 171 CYS MODIFIED RESIDUE MODRES 8R53 LLP A 680 LYS MODIFIED RESIDUE HET CSO A 171 7 HET LLP A 680 24 HET GLC A 901 12 HET DMS A 902 4 HET DMS A 903 4 HET DMS A 904 4 HET DMS A 905 4 HET DMS A 906 4 HET DMS A 907 4 HET DMS A 908 4 HET DMS A 909 4 HET DMS A 910 4 HET DMS A 911 4 HET DMS A 912 4 HET DMS A 913 4 HET DMS A 914 4 HET DMS A 915 4 HET DMS A 916 4 HET DMS A 917 4 HET DMS A 918 4 HET DMS A 919 4 HET DMS A 920 4 HET DMS A 921 4 HET DMS A 922 4 HET DMS A 923 4 HET DMS A 924 4 HET DMS A 925 4 HET DMS A 926 4 HET DMS A 927 4 HET KDH A 928 33 HETNAM CSO S-HYDROXYCYSTEINE HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM DMS DIMETHYL SULFOXIDE HETNAM KDH (2R,3R)-5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-3,4- HETNAM 2 KDH DIHYDRO-2H-CHROMEN-3-YL 3,4,5-TRIHYDROXYBENZOATE HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN KDH (-)-EPIGALLOCATECHIN-3-GALLATE; EGCG FORMUL 1 CSO C3 H7 N O3 S FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 GLC C6 H12 O6 FORMUL 3 DMS 26(C2 H6 O S) FORMUL 29 KDH C22 H18 O11 FORMUL 30 HOH *821(H2 O) HELIX 1 AA1 LYS A 9 GLY A 17 5 9 HELIX 2 AA2 GLY A 20 THR A 38 1 19 HELIX 3 AA3 THR A 47 HIS A 62 1 16 HELIX 4 AA4 LEU A 63 ASP A 78 1 16 HELIX 5 AA5 THR A 94 LEU A 102 1 9 HELIX 6 AA6 LEU A 104 LEU A 115 1 12 HELIX 7 AA7 ASP A 118 GLU A 124 1 7 HELIX 8 AA8 GLY A 134 LEU A 150 1 17 HELIX 9 AA9 PRO A 194 THR A 197 5 4 HELIX 10 AB1 GLY A 261 ASP A 268 1 8 HELIX 11 AB2 ASP A 268 ASN A 274 1 7 HELIX 12 AB3 ILE A 275 ARG A 277 5 3 HELIX 13 AB4 LYS A 289 SER A 313 1 25 HELIX 14 AB5 ALA A 328 LYS A 332 1 5 HELIX 15 AB6 LEU A 344 LEU A 356 1 13 HELIX 16 AB7 ASP A 360 THR A 371 1 12 HELIX 17 AB8 ILE A 380 LEU A 384 5 5 HELIX 18 AB9 VAL A 389 LEU A 396 1 8 HELIX 19 AC1 LEU A 396 PHE A 418 1 23 HELIX 20 AC2 ASP A 421 SER A 429 1 9 HELIX 21 AC3 MET A 441 SER A 449 1 9 HELIX 22 AC4 ALA A 456 THR A 466 1 11 HELIX 23 AC5 PHE A 468 GLU A 475 1 8 HELIX 24 AC6 ASN A 496 GLY A 508 1 13 HELIX 25 AC7 GLU A 509 VAL A 525 5 17 HELIX 26 AC8 ASP A 527 LYS A 554 1 28 HELIX 27 AC9 HIS A 571 LYS A 574 5 4 HELIX 28 AD1 ARG A 575 GLU A 593 1 19 HELIX 29 AD2 TYR A 613 ASN A 631 1 19 HELIX 30 AD3 VAL A 636 ASP A 638 5 3 HELIX 31 AD4 ARG A 649 ILE A 657 1 9 HELIX 32 AD5 PRO A 658 ALA A 660 5 3 HELIX 33 AD6 THR A 676 ASN A 684 1 9 HELIX 34 AD7 ALA A 695 GLY A 704 1 10 HELIX 35 AD8 GLU A 705 PHE A 708 5 4 HELIX 36 AD9 ARG A 714 GLY A 725 1 12 HELIX 37 AE1 ASN A 727 ILE A 735 1 9 HELIX 38 AE2 ILE A 735 GLY A 748 1 14 HELIX 39 AE3 PHE A 758 HIS A 768 1 11 HELIX 40 AE4 VAL A 773 ALA A 775 5 3 HELIX 41 AE5 ASP A 776 LYS A 792 1 17 HELIX 42 AE6 ASN A 793 ALA A 806 1 14 HELIX 43 AE7 THR A 807 PHE A 811 5 5 HELIX 44 AE8 SER A 812 ILE A 824 1 13 SHEET 1 AA1 3 LYS A 191 ALA A 192 0 SHEET 2 AA1 3 GLN A 219 PRO A 231 -1 O ASP A 227 N LYS A 191 SHEET 3 AA1 3 LEU A 198 PHE A 202 -1 N LEU A 198 O ALA A 223 SHEET 1 AA2 9 LYS A 191 ALA A 192 0 SHEET 2 AA2 9 GLN A 219 PRO A 231 -1 O ASP A 227 N LYS A 191 SHEET 3 AA2 9 VAL A 238 LYS A 247 -1 O SER A 245 N MET A 224 SHEET 4 AA2 9 ALA A 154 ILE A 159 1 N GLY A 156 O ARG A 242 SHEET 5 AA2 9 ARG A 81 LEU A 85 1 N ILE A 82 O TYR A 155 SHEET 6 AA2 9 VAL A 333 ASN A 338 1 O GLN A 336 N TYR A 83 SHEET 7 AA2 9 CYS A 372 THR A 375 1 O ALA A 373 N LEU A 337 SHEET 8 AA2 9 ALA A 451 GLY A 454 1 O ALA A 451 N TYR A 374 SHEET 9 AA2 9 PHE A 479 ASN A 481 1 O GLN A 480 N VAL A 452 SHEET 1 AA3 2 PHE A 89 GLY A 92 0 SHEET 2 AA3 2 ALA A 129 LEU A 131 -1 O LEU A 131 N PHE A 89 SHEET 1 AA4 2 ASN A 167 CSO A 171 0 SHEET 2 AA4 2 TRP A 174 GLU A 178 -1 O MET A 176 N LYS A 169 SHEET 1 AA5 2 ARG A 205 HIS A 208 0 SHEET 2 AA5 2 ALA A 213 VAL A 216 -1 O LYS A 214 N GLU A 207 SHEET 1 AA6 3 ARG A 386 PRO A 388 0 SHEET 2 AA6 3 ARG A 438 ASN A 440 -1 O ILE A 439 N TRP A 387 SHEET 3 AA6 3 VAL A 431 GLU A 432 -1 N GLU A 432 O ARG A 438 SHEET 1 AA7 6 LEU A 640 LEU A 645 0 SHEET 2 AA7 6 ARG A 601 GLY A 606 1 N VAL A 603 O ARG A 641 SHEET 3 AA7 6 LEU A 562 VAL A 567 1 N ASP A 564 O MET A 604 SHEET 4 AA7 6 LEU A 662 GLN A 665 1 O LEU A 662 N VAL A 565 SHEET 5 AA7 6 LEU A 687 GLY A 690 1 O ILE A 689 N SER A 663 SHEET 6 AA7 6 PHE A 709 ILE A 710 1 O PHE A 709 N THR A 688 LINK C ILE A 170 N CSO A 171 1555 1555 1.33 LINK C CSO A 171 N GLY A 172 1555 1555 1.32 LINK C MET A 679 N LLP A 680 1555 1555 1.33 LINK C LLP A 680 N PHE A 681 1555 1555 1.33 CRYST1 126.183 126.183 115.232 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008678 0.00000