HEADER SIGNALING PROTEIN 16-NOV-23 8R5E
TITLE JNK1 COVALENTLY BOUND TO RU77 CYCLOHEXENONE BASED INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 8;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: MAP KINASE 8,MAPK 8,JNK-46,STRESS-ACTIVATED PROTEIN KINASE
COMPND 5 1C,SAPK1C,STRESS-ACTIVATED PROTEIN KINASE JNK1,C-JUN N-TERMINAL
COMPND 6 KINASE 1;
COMPND 7 EC: 2.7.11.24;
COMPND 8 ENGINEERED: YES;
COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE JNK1-BETA-1 KINASE WITH
COMPND 10 RU77 COVALENT INHIBITOR AT THE KINASE DOCKING GROOVE
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: MAPK8, JNK1, PRKM8, SAPK1, SAPK1C;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS MAPK, MAP KINASE, KINASE, INHIBITOR, COVALENT INHIBITOR, SIGNALING
KEYWDS 2 PROTEIN, C-JUN N-TERMINAL KINASES
EXPDTA X-RAY DIFFRACTION
AUTHOR P.SOK,A.POTI,A.REMENYI
REVDAT 1 27-NOV-24 8R5E 0
JRNL AUTH A.POTI,P.SOK,A.REMENYI
JRNL TITL THE COVALENT COORDINATION OF CYCLOHEXENONE INHIBITORS IN THE
JRNL TITL 2 MAP KINASE DOCKING GROOVE
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0419
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.77
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 75.6
REMARK 3 NUMBER OF REFLECTIONS : 32690
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.177
REMARK 3 R VALUE (WORKING SET) : 0.174
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800
REMARK 3 FREE R VALUE TEST SET COUNT : 2001
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74
REMARK 3 REFLECTION IN BIN (WORKING SET) : 161
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.12
REMARK 3 BIN R VALUE (WORKING SET) : 0.3510
REMARK 3 BIN FREE R VALUE SET COUNT : 10
REMARK 3 BIN FREE R VALUE : 0.5520
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2844
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 59
REMARK 3 SOLVENT ATOMS : 120
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.11
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.23000
REMARK 3 B22 (A**2) : 0.07000
REMARK 3 B33 (A**2) : -0.29000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.236
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.911
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2993 ; 0.007 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 8R5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-23.
REMARK 100 THE DEPOSITION ID IS D_1292134595.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 23-OCT-23
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY
REMARK 200 BEAMLINE : P14 (MX2)
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : STARANISO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34746
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.697
REMARK 200 RESOLUTION RANGE LOW (A) : 65.341
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6
REMARK 200 DATA REDUNDANCY : 9.300
REMARK 200 R MERGE (I) : 0.05300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85
REMARK 200 COMPLETENESS FOR SHELL (%) : 67.6
REMARK 200 DATA REDUNDANCY IN SHELL : 8.10
REMARK 200 R MERGE FOR SHELL (I) : 1.35300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.712
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: LONG RODS
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 49.18
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 20000 , 0,1 M HEPES PH 7.5, 10%
REMARK 280 MPD, AND AS RESERVOIR 1.25 M NACL WAS USED, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.67050
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.43450
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.62450
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.43450
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.67050
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.62450
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A -1
REMARK 465 SER A 0
REMARK 465 MET A 1
REMARK 465 SER A 2
REMARK 465 ARG A 3
REMARK 465 SER A 4
REMARK 465 GLU A 364
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 5 CG CD CE NZ
REMARK 470 ARG A 6 CD NE CZ NH1 NH2
REMARK 470 ASN A 8 CG OD1 ND2
REMARK 470 ASP A 17 CG OD1 OD2
REMARK 470 LYS A 30 CD CE NZ
REMARK 470 GLN A 37 CG CD OE1 NE2
REMARK 470 LYS A 96 CG CD CE NZ
REMARK 470 GLU A 122 CG CD OE1 OE2
REMARK 470 ARG A 174 NE CZ NH1 NH2
REMARK 470 HIS A 230 CG ND1 CD2 CE1 NE2
REMARK 470 ASP A 283 CG OD1 OD2
REMARK 470 LYS A 288 CD CE NZ
REMARK 470 ASP A 362 CG OD1 OD2
REMARK 470 LEU A 363 CG CD1 CD2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 8 -2.37 -58.50
REMARK 500 GLN A 102 -55.49 -128.38
REMARK 500 ARG A 150 -10.25 76.05
REMARK 500 CYS A 163 5.95 86.96
REMARK 500 ALA A 173 -130.18 60.28
REMARK 500 ALA A 282 43.07 -162.33
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 401 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASN A 156 OD1
REMARK 620 2 ANP A 402 O2A 78.4
REMARK 620 3 ANP A 402 O1G 86.2 70.2
REMARK 620 4 HOH A 539 O 88.5 159.2 93.1
REMARK 620 5 HOH A 599 O 97.6 100.7 169.3 97.0
REMARK 620 N 1 2 3 4
DBREF 8R5E A 1 364 UNP P45983 MK08_HUMAN 1 364
SEQADV 8R5E GLY A -1 UNP P45983 EXPRESSION TAG
SEQADV 8R5E SER A 0 UNP P45983 EXPRESSION TAG
SEQADV 8R5E ILE A 208 UNP P45983 LEU 208 VARIANT
SEQRES 1 A 366 GLY SER MET SER ARG SER LYS ARG ASP ASN ASN PHE TYR
SEQRES 2 A 366 SER VAL GLU ILE GLY ASP SER THR PHE THR VAL LEU LYS
SEQRES 3 A 366 ARG TYR GLN ASN LEU LYS PRO ILE GLY SER GLY ALA GLN
SEQRES 4 A 366 GLY ILE VAL CYS ALA ALA TYR ASP ALA ILE LEU GLU ARG
SEQRES 5 A 366 ASN VAL ALA ILE LYS LYS LEU SER ARG PRO PHE GLN ASN
SEQRES 6 A 366 GLN THR HIS ALA LYS ARG ALA TYR ARG GLU LEU VAL LEU
SEQRES 7 A 366 MET LYS CYS VAL ASN HIS LYS ASN ILE ILE GLY LEU LEU
SEQRES 8 A 366 ASN VAL PHE THR PRO GLN LYS SER LEU GLU GLU PHE GLN
SEQRES 9 A 366 ASP VAL TYR ILE VAL MET GLU LEU MET ASP ALA ASN LEU
SEQRES 10 A 366 CYS GLN VAL ILE GLN MET GLU LEU ASP HIS GLU ARG MET
SEQRES 11 A 366 SER TYR LEU LEU TYR GLN MET LEU CYS GLY ILE LYS HIS
SEQRES 12 A 366 LEU HIS SER ALA GLY ILE ILE HIS ARG ASP LEU LYS PRO
SEQRES 13 A 366 SER ASN ILE VAL VAL LYS SER ASP CYS THR LEU LYS ILE
SEQRES 14 A 366 LEU ASP PHE GLY LEU ALA ARG THR ALA GLY THR SER PHE
SEQRES 15 A 366 MET MET THR PRO TYR VAL VAL THR ARG TYR TYR ARG ALA
SEQRES 16 A 366 PRO GLU VAL ILE LEU GLY MET GLY TYR LYS GLU ASN VAL
SEQRES 17 A 366 ASP ILE TRP SER VAL GLY CYS ILE MET GLY GLU MET ILE
SEQRES 18 A 366 LYS GLY GLY VAL LEU PHE PRO GLY THR ASP HIS ILE ASP
SEQRES 19 A 366 GLN TRP ASN LYS VAL ILE GLU GLN LEU GLY THR PRO CYS
SEQRES 20 A 366 PRO GLU PHE MET LYS LYS LEU GLN PRO THR VAL ARG THR
SEQRES 21 A 366 TYR VAL GLU ASN ARG PRO LYS TYR ALA GLY TYR SER PHE
SEQRES 22 A 366 GLU LYS LEU PHE PRO ASP VAL LEU PHE PRO ALA ASP SER
SEQRES 23 A 366 GLU HIS ASN LYS LEU LYS ALA SER GLN ALA ARG ASP LEU
SEQRES 24 A 366 LEU SER LYS MET LEU VAL ILE ASP ALA SER LYS ARG ILE
SEQRES 25 A 366 SER VAL ASP GLU ALA LEU GLN HIS PRO TYR ILE ASN VAL
SEQRES 26 A 366 TRP TYR ASP PRO SER GLU ALA GLU ALA PRO PRO PRO LYS
SEQRES 27 A 366 ILE PRO ASP LYS GLN LEU ASP GLU ARG GLU HIS THR ILE
SEQRES 28 A 366 GLU GLU TRP LYS GLU LEU ILE TYR LYS GLU VAL MET ASP
SEQRES 29 A 366 LEU GLU
HET MG A 401 1
HET ANP A 402 31
HET Y6K A 403 21
HET GOL A 404 6
HETNAM MG MAGNESIUM ION
HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
HETNAM Y6K ~{O}3-~{TERT}-BUTYL ~{O}1-METHYL (1~{S},3~{R},5~{R})-6-
HETNAM 2 Y6K METHYLIDENE-4-OXIDANYLIDENE-BICYCLO[3.2.1]OCTANE-1,3-
HETNAM 3 Y6K DICARBOXYLATE
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 MG MG 2+
FORMUL 3 ANP C10 H17 N6 O12 P3
FORMUL 4 Y6K C16 H22 O5
FORMUL 5 GOL C3 H8 O3
FORMUL 6 HOH *120(H2 O)
HELIX 1 AA1 ASN A 63 VAL A 80 1 18
HELIX 2 AA2 LEU A 115 MET A 121 1 7
HELIX 3 AA3 ASP A 124 ALA A 145 1 22
HELIX 4 AA4 LYS A 153 SER A 155 5 3
HELIX 5 AA5 ALA A 193 LEU A 198 1 6
HELIX 6 AA6 ASN A 205 GLY A 221 1 17
HELIX 7 AA7 ASP A 229 GLY A 242 1 14
HELIX 8 AA8 CYS A 245 LYS A 250 1 6
HELIX 9 AA9 GLN A 253 ASN A 262 1 10
HELIX 10 AB1 SER A 270 PHE A 275 1 6
HELIX 11 AB2 PRO A 276 PHE A 280 5 5
HELIX 12 AB3 SER A 284 LEU A 302 1 19
HELIX 13 AB4 ASP A 305 ARG A 309 5 5
HELIX 14 AB5 SER A 311 HIS A 318 1 8
HELIX 15 AB6 ILE A 321 TYR A 325 5 5
HELIX 16 AB7 ASP A 326 GLU A 331 1 6
HELIX 17 AB8 THR A 348 ASP A 362 1 15
SHEET 1 AA1 2 PHE A 10 ILE A 15 0
SHEET 2 AA1 2 SER A 18 LEU A 23 -1 O PHE A 20 N VAL A 13
SHEET 1 AA2 5 TYR A 26 GLY A 33 0
SHEET 2 AA2 5 ILE A 39 ASP A 45 -1 O ALA A 42 N LYS A 30
SHEET 3 AA2 5 ARG A 50 SER A 58 -1 O ILE A 54 N CYS A 41
SHEET 4 AA2 5 ASP A 103 GLU A 109 -1 O VAL A 104 N LEU A 57
SHEET 5 AA2 5 LEU A 88 PHE A 92 -1 N PHE A 92 O TYR A 105
SHEET 1 AA3 3 ALA A 113 ASN A 114 0
SHEET 2 AA3 3 ILE A 157 VAL A 159 -1 O VAL A 159 N ALA A 113
SHEET 3 AA3 3 LEU A 165 ILE A 167 -1 O LYS A 166 N VAL A 158
LINK SG CYS A 163 C3 Y6K A 403 1555 1555 1.81
LINK OD1 ASN A 156 MG MG A 401 1555 1555 2.10
LINK MG MG A 401 O2A ANP A 402 1555 1555 2.38
LINK MG MG A 401 O1G ANP A 402 1555 1555 2.03
LINK MG MG A 401 O HOH A 539 1555 1555 2.20
LINK MG MG A 401 O HOH A 599 1555 1555 1.92
CRYST1 65.341 75.249 82.869 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015304 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013289 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012067 0.00000