HEADER SIGNALING PROTEIN 16-NOV-23 8R5F TITLE ERK2 COVALENTLY BOUND TO RU83 CYCLOHEXENONE BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAP KINASE 1,MAPK 1,ERT1,EXTRACELLULAR SIGNAL-REGULATED COMPND 5 KINASE 2,ERK-2,MAP KINASE ISOFORM P42,P42-MAPK,MITOGEN-ACTIVATED COMPND 6 PROTEIN KINASE 2,MAP KINASE 2,MAPK 2; COMPND 7 EC: 2.7.11.24; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE DEPHOSPHORYLATED INACTIVE ERK2 KINASE WITH RU83 COMPND 10 COVALENT INHIBITOR IN THE DOCKING GROOVE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK1, ERK2, PRKM1, PRKM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MAPK, MAP KINASE, KINASE, INHIBITOR, COVALENT INHIBITOR, SIGNALING KEYWDS 2 PROTEIN, ERK2, MITOGEN-ACTIVATED PROTEIN KINASE 1 EXPDTA X-RAY DIFFRACTION AUTHOR P.SOK,A.POTI,A.REMENYI REVDAT 1 27-NOV-24 8R5F 0 JRNL AUTH A.POTI,P.SOK,A.REMENYI JRNL TITL THE COVALENT COORDINATION OF CYCLOHEXENONE INHIBITORS IN THE JRNL TITL 2 MAP KINASE DOCKING GROOVE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.5100 - 2.3300 1.00 3302 143 0.2010 0.2446 REMARK 3 2 2.3300 - 2.1900 1.00 3299 141 0.1895 0.2039 REMARK 3 3 2.1900 - 2.0800 1.00 3297 142 0.1870 0.2465 REMARK 3 4 2.0800 - 1.9900 1.00 3286 142 0.1933 0.1969 REMARK 3 5 1.9900 - 1.9100 1.00 3301 142 0.2246 0.2552 REMARK 3 6 1.9100 - 1.8500 1.00 3292 141 0.2280 0.2793 REMARK 3 7 1.8500 - 1.7900 1.00 3257 140 0.2292 0.2678 REMARK 3 8 1.7900 - 1.7400 1.00 3254 139 0.2346 0.2511 REMARK 3 9 1.7400 - 1.6900 1.00 3296 142 0.2735 0.2426 REMARK 3 10 1.6900 - 1.6500 1.00 3248 140 0.3501 0.3497 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 NULL REMARK 3 ANGLE : 1.403 NULL REMARK 3 CHIRALITY : 0.085 436 REMARK 3 PLANARITY : 0.012 504 REMARK 3 DIHEDRAL : 14.345 1111 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8193 -12.6142 1.2163 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.4173 REMARK 3 T33: 0.2867 T12: 0.0430 REMARK 3 T13: -0.0488 T23: -0.0768 REMARK 3 L TENSOR REMARK 3 L11: 6.9808 L22: 7.7564 REMARK 3 L33: 8.0436 L12: -0.0718 REMARK 3 L13: -5.0576 L23: 4.4828 REMARK 3 S TENSOR REMARK 3 S11: 0.3916 S12: -0.1458 S13: 0.4192 REMARK 3 S21: -0.1085 S22: -0.5317 S23: 0.6900 REMARK 3 S31: -0.5409 S32: -0.4401 S33: 0.1402 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1507 -12.3346 5.2782 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.3078 REMARK 3 T33: 0.2058 T12: 0.0273 REMARK 3 T13: -0.0331 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.6178 L22: 6.0569 REMARK 3 L33: 6.5218 L12: 2.4791 REMARK 3 L13: 0.3311 L23: 4.5553 REMARK 3 S TENSOR REMARK 3 S11: 0.2436 S12: 0.0568 S13: 0.1236 REMARK 3 S21: 0.1283 S22: -0.5671 S23: 0.4756 REMARK 3 S31: -0.2387 S32: -0.6219 S33: 0.3300 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0382 -8.4217 9.4232 REMARK 3 T TENSOR REMARK 3 T11: 0.1308 T22: 0.2993 REMARK 3 T33: 0.2768 T12: -0.0495 REMARK 3 T13: 0.0325 T23: -0.0468 REMARK 3 L TENSOR REMARK 3 L11: 0.8954 L22: 6.5145 REMARK 3 L33: 7.0335 L12: -0.2742 REMARK 3 L13: -0.5946 L23: -1.3085 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: -0.0511 S13: 0.0684 REMARK 3 S21: -0.0212 S22: 0.0578 S23: -0.0976 REMARK 3 S31: -0.4271 S32: 0.3596 S33: -0.1240 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8836 -22.3281 21.4201 REMARK 3 T TENSOR REMARK 3 T11: 0.3362 T22: 0.2251 REMARK 3 T33: 0.2657 T12: -0.0165 REMARK 3 T13: -0.0400 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.0536 L22: 1.9072 REMARK 3 L33: 6.2446 L12: -0.2265 REMARK 3 L13: 0.4303 L23: -0.1600 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: -0.1082 S13: -0.1657 REMARK 3 S21: 0.2801 S22: 0.0100 S23: -0.0400 REMARK 3 S31: 0.7931 S32: 0.0496 S33: -0.1157 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1039 -10.7371 22.5149 REMARK 3 T TENSOR REMARK 3 T11: 0.3781 T22: 0.3069 REMARK 3 T33: 0.3591 T12: -0.0521 REMARK 3 T13: -0.0167 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 9.0969 L22: 2.3563 REMARK 3 L33: 7.2593 L12: 3.8798 REMARK 3 L13: 2.7379 L23: 2.6165 REMARK 3 S TENSOR REMARK 3 S11: -0.0462 S12: 0.1477 S13: 0.8137 REMARK 3 S21: 0.4074 S22: 0.1203 S23: -0.0433 REMARK 3 S31: -0.4211 S32: 0.7258 S33: -0.0716 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5374 -12.0429 33.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.3799 T22: 0.2119 REMARK 3 T33: 0.1988 T12: -0.0407 REMARK 3 T13: -0.0193 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 8.4992 L22: 3.1389 REMARK 3 L33: 8.3256 L12: 0.4970 REMARK 3 L13: 0.9929 L23: 1.7240 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: 0.1892 S13: 0.5494 REMARK 3 S21: 0.2784 S22: 0.1920 S23: -0.0676 REMARK 3 S31: -0.2704 S32: 0.3701 S33: -0.2188 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 224 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5746 -9.7120 38.3881 REMARK 3 T TENSOR REMARK 3 T11: 0.4502 T22: 0.2866 REMARK 3 T33: 0.2816 T12: -0.0141 REMARK 3 T13: 0.0426 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 6.3995 L22: 7.7954 REMARK 3 L33: 9.2774 L12: 0.0375 REMARK 3 L13: 4.3866 L23: 5.6253 REMARK 3 S TENSOR REMARK 3 S11: -0.1257 S12: -0.2581 S13: 0.3576 REMARK 3 S21: 0.0548 S22: -0.0880 S23: 0.1699 REMARK 3 S31: -0.3547 S32: -0.2316 S33: 0.2108 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7267 -2.7026 47.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.6225 T22: 0.3873 REMARK 3 T33: 0.5050 T12: -0.0438 REMARK 3 T13: -0.0673 T23: -0.1244 REMARK 3 L TENSOR REMARK 3 L11: 4.7480 L22: 1.0226 REMARK 3 L33: 8.2401 L12: -1.7813 REMARK 3 L13: 1.1174 L23: -1.7548 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.0889 S13: 0.3135 REMARK 3 S21: -0.2749 S22: 0.0231 S23: -0.9295 REMARK 3 S31: 0.2283 S32: 0.7398 S33: -0.0839 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.8143 -23.3981 38.0369 REMARK 3 T TENSOR REMARK 3 T11: 0.6556 T22: 0.3943 REMARK 3 T33: 0.2973 T12: 0.0965 REMARK 3 T13: -0.1211 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 2.0358 L22: 2.4051 REMARK 3 L33: 4.0207 L12: -0.6707 REMARK 3 L13: -0.8336 L23: 0.4994 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.3621 S13: -0.1896 REMARK 3 S21: 0.5746 S22: 0.1090 S23: -0.1113 REMARK 3 S31: 0.9339 S32: 0.7213 S33: -0.0992 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 358 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7555 -2.2245 9.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.4372 REMARK 3 T33: 0.4324 T12: -0.1497 REMARK 3 T13: 0.1042 T23: -0.0673 REMARK 3 L TENSOR REMARK 3 L11: 4.2401 L22: 7.2971 REMARK 3 L33: 4.5674 L12: -1.8402 REMARK 3 L13: 0.5318 L23: -1.6367 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.2058 S13: 0.1516 REMARK 3 S21: 0.1617 S22: 0.1273 S23: -0.7737 REMARK 3 S31: -0.9767 S32: 0.8988 S33: -0.1700 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R5F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48540 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 123.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 1.89500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RHOMBOID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1 M TRIS PH 8.5, 1.25 REMARK 280 M NACL AS RESERVOIR, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.74300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.62550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.54050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.62550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.74300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.54050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 ASP A 177 REMARK 465 HIS A 178 REMARK 465 ASP A 179 REMARK 465 HIS A 180 REMARK 465 THR A 181 REMARK 465 GLY A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 THR A 185 REMARK 465 GLU A 186 REMARK 465 TYR A 187 REMARK 465 VAL A 188 REMARK 465 SER A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CE NZ REMARK 470 ARG A 77 CD NE CZ NH1 NH2 REMARK 470 LYS A 99 CE NZ REMARK 470 LYS A 117 CD CE NZ REMARK 470 SER A 202 OG REMARK 470 LYS A 203 CG CD CE NZ REMARK 470 LEU A 258 CG CD1 CD2 REMARK 470 LYS A 300 CE NZ REMARK 470 GLU A 305 CD OE1 OE2 REMARK 470 ASP A 332 CG OD1 OD2 REMARK 470 GLU A 349 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 148 -4.69 76.68 REMARK 500 ASP A 149 40.15 -141.38 REMARK 500 ASP A 167 67.52 67.59 REMARK 500 ASP A 175 76.38 -171.14 REMARK 500 LEU A 294 55.18 -98.19 REMARK 500 MET A 333 143.93 -172.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 8R5F A 1 360 UNP P28482 MK01_HUMAN 1 360 SEQADV 8R5F GLY A -3 UNP P28482 EXPRESSION TAG SEQADV 8R5F SER A -2 UNP P28482 EXPRESSION TAG SEQADV 8R5F ALA A -1 UNP P28482 EXPRESSION TAG SEQADV 8R5F SER A 0 UNP P28482 EXPRESSION TAG SEQRES 1 A 364 GLY SER ALA SER MET ALA ALA ALA ALA ALA ALA GLY ALA SEQRES 2 A 364 GLY PRO GLU MET VAL ARG GLY GLN VAL PHE ASP VAL GLY SEQRES 3 A 364 PRO ARG TYR THR ASN LEU SER TYR ILE GLY GLU GLY ALA SEQRES 4 A 364 TYR GLY MET VAL CYS SER ALA TYR ASP ASN VAL ASN LYS SEQRES 5 A 364 VAL ARG VAL ALA ILE LYS LYS ILE SER PRO PHE GLU HIS SEQRES 6 A 364 GLN THR TYR CYS GLN ARG THR LEU ARG GLU ILE LYS ILE SEQRES 7 A 364 LEU LEU ARG PHE ARG HIS GLU ASN ILE ILE GLY ILE ASN SEQRES 8 A 364 ASP ILE ILE ARG ALA PRO THR ILE GLU GLN MET LYS ASP SEQRES 9 A 364 VAL TYR ILE VAL GLN ASP LEU MET GLU THR ASP LEU TYR SEQRES 10 A 364 LYS LEU LEU LYS THR GLN HIS LEU SER ASN ASP HIS ILE SEQRES 11 A 364 CYS TYR PHE LEU TYR GLN ILE LEU ARG GLY LEU LYS TYR SEQRES 12 A 364 ILE HIS SER ALA ASN VAL LEU HIS ARG ASP LEU LYS PRO SEQRES 13 A 364 SER ASN LEU LEU LEU ASN THR THR CYS ASP LEU LYS ILE SEQRES 14 A 364 CYS ASP PHE GLY LEU ALA ARG VAL ALA ASP PRO ASP HIS SEQRES 15 A 364 ASP HIS THR GLY PHE LEU THR GLU TYR VAL ALA THR ARG SEQRES 16 A 364 TRP TYR ARG ALA PRO GLU ILE MET LEU ASN SER LYS GLY SEQRES 17 A 364 TYR THR LYS SER ILE ASP ILE TRP SER VAL GLY CYS ILE SEQRES 18 A 364 LEU ALA GLU MET LEU SER ASN ARG PRO ILE PHE PRO GLY SEQRES 19 A 364 LYS HIS TYR LEU ASP GLN LEU ASN HIS ILE LEU GLY ILE SEQRES 20 A 364 LEU GLY SER PRO SER GLN GLU ASP LEU ASN CYS ILE ILE SEQRES 21 A 364 ASN LEU LYS ALA ARG ASN TYR LEU LEU SER LEU PRO HIS SEQRES 22 A 364 LYS ASN LYS VAL PRO TRP ASN ARG LEU PHE PRO ASN ALA SEQRES 23 A 364 ASP SER LYS ALA LEU ASP LEU LEU ASP LYS MET LEU THR SEQRES 24 A 364 PHE ASN PRO HIS LYS ARG ILE GLU VAL GLU GLN ALA LEU SEQRES 25 A 364 ALA HIS PRO TYR LEU GLU GLN TYR TYR ASP PRO SER ASP SEQRES 26 A 364 GLU PRO ILE ALA GLU ALA PRO PHE LYS PHE ASP MET GLU SEQRES 27 A 364 LEU ASP ASP LEU PRO LYS GLU LYS LEU LYS GLU LEU ILE SEQRES 28 A 364 PHE GLU GLU THR ALA ARG PHE GLN PRO GLY TYR ARG SER HET ANP A 401 31 HET GOL A 402 6 HET Y3H A 403 42 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GOL GLYCEROL HETNAM Y3H ~{O}3-~{TERT}-BUTYL ~{O}1-PROP-2-YNYL (1~{S},3~{S})-1- HETNAM 2 Y3H METHYL-4-OXIDANYLIDENE-CYCLOHEXANE-1,3-DICARBOXYLATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 Y3H C16 H22 O5 FORMUL 5 HOH *118(H2 O) HELIX 1 AA1 HIS A 61 PHE A 78 1 18 HELIX 2 AA2 LEU A 112 GLN A 119 1 8 HELIX 3 AA3 SER A 122 ALA A 143 1 22 HELIX 4 AA4 LYS A 151 SER A 153 5 3 HELIX 5 AA5 ALA A 195 SER A 202 1 8 HELIX 6 AA6 LYS A 207 ASN A 224 1 18 HELIX 7 AA7 HIS A 232 GLY A 245 1 14 HELIX 8 AA8 SER A 248 CYS A 254 1 7 HELIX 9 AA9 ASN A 257 SER A 266 1 10 HELIX 10 AB1 PRO A 274 PHE A 279 1 6 HELIX 11 AB2 ASP A 283 LEU A 294 1 12 HELIX 12 AB3 GLU A 303 ALA A 309 1 7 HELIX 13 AB4 HIS A 310 GLU A 314 5 5 HELIX 14 AB5 ASP A 318 GLU A 322 5 5 HELIX 15 AB6 PRO A 339 ALA A 352 1 14 HELIX 16 AB7 ARG A 353 GLN A 355 5 3 SHEET 1 AA1 2 GLU A 12 VAL A 14 0 SHEET 2 AA1 2 GLN A 17 PHE A 19 -1 O PHE A 19 N GLU A 12 SHEET 1 AA2 5 TYR A 25 GLU A 33 0 SHEET 2 AA2 5 MET A 38 ASP A 44 -1 O SER A 41 N SER A 29 SHEET 3 AA2 5 VAL A 49 ILE A 56 -1 O VAL A 49 N ASP A 44 SHEET 4 AA2 5 VAL A 101 ASP A 106 -1 O GLN A 105 N ALA A 52 SHEET 5 AA2 5 ILE A 86 ILE A 90 -1 N ASN A 87 O VAL A 104 SHEET 1 AA3 3 THR A 110 ASP A 111 0 SHEET 2 AA3 3 LEU A 155 LEU A 157 -1 O LEU A 157 N THR A 110 SHEET 3 AA3 3 LEU A 163 ILE A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA4 2 VAL A 145 LEU A 146 0 SHEET 2 AA4 2 ARG A 172 VAL A 173 -1 O ARG A 172 N LEU A 146 LINK NE2AHIS A 125 C3 AY3H A 403 1555 1555 1.53 LINK SG BCYS A 161 C3 BY3H A 403 1555 1555 1.77 CISPEP 1 GLY A 22 PRO A 23 0 4.47 CRYST1 41.486 77.081 123.251 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024105 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012973 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008114 0.00000