HEADER CELL ADHESION 17-NOV-23 8R5L TITLE E-SELECTIN COMPLEXED WITH GLYCOMIMETIC LIGAND BW850 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E-SELECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CD62 ANTIGEN-LIKE FAMILY MEMBER E,ENDOTHELIAL LEUKOCYTE COMPND 5 ADHESION MOLECULE 1,ELAM-1,LEUKOCYTE-ENDOTHELIAL CELL ADHESION COMPND 6 MOLECULE 2,LECAM2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SELE, ELAM1; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO CELLS KEYWDS SICKLE CELL, VASO-OCCLUSIVE CRISIS (VOC), RIVIPANSEL, SICKLE CELL KEYWDS 2 DISEASE (SCD), CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR R.P.JAKOB,B.ERNST,T.MAIER REVDAT 1 23-OCT-24 8R5L 0 JRNL AUTH B.WAGNER,M.SMIESKO,R.P.JAKOB,T.MUHLETHALER,J.CRAMER,T.MAIER, JRNL AUTH 2 S.RABBANI,O.SCHWARDT,B.ERNST JRNL TITL ANALOGUES OF THE PAN-SELECTIN ANTAGONIST RIVIPANSEL JRNL TITL 2 (GMI-1070). JRNL REF EUR.J.MED.CHEM. V. 272 16455 2024 JRNL REFN ISSN 0223-5234 JRNL PMID 38728868 JRNL DOI 10.1016/J.EJMECH.2024.116455 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 16685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.53 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2245 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4677 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2133 REMARK 3 BIN R VALUE (WORKING SET) : 0.4609 REMARK 3 BIN FREE R VALUE : 0.5951 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.99 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 112 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 187 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -17.28570 REMARK 3 B22 (A**2) : 7.86360 REMARK 3 B33 (A**2) : 9.42210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -10.38670 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.700 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.283 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.201 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.294 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.204 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2506 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3511 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 828 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 67 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 350 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2506 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 342 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2678 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.32 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.15 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -11.5166 -7.8564 4.0817 REMARK 3 T TENSOR REMARK 3 T11: 0.1047 T22: 0.0700 REMARK 3 T33: -0.2171 T12: -0.0154 REMARK 3 T13: -0.0753 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 0.3505 L22: 0.7082 REMARK 3 L33: 3.8172 L12: 0.3202 REMARK 3 L13: -0.5775 L23: -1.4796 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: 0.0592 S13: -0.0822 REMARK 3 S21: 0.0073 S22: -0.0361 S23: -0.0181 REMARK 3 S31: -0.2871 S32: -0.2605 S33: -0.0331 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17529 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 0.1 M MOPS PH 6.2, 11-14% REMARK 280 PEG8000, AFTER MICROSEEDING, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.55000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 279 REMARK 465 ALA A 280 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA CA A 308 H12 Y6T A 309 1.48 REMARK 500 OE2 GLU A 8 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 23 -5.54 74.16 REMARK 500 TYR A 48 -165.22 67.71 REMARK 500 ASN A 75 37.34 -146.74 REMARK 500 LYS A 86 133.80 67.23 REMARK 500 ASP A 100 66.05 60.07 REMARK 500 SER A 128 16.14 52.25 REMARK 500 ASN A 139 -139.50 -148.29 REMARK 500 VAL A 171 75.15 -102.90 REMARK 500 ASN A 182 1.39 83.83 REMARK 500 ALA A 228 94.17 -53.72 REMARK 500 ASN A 229 -3.27 91.68 REMARK 500 PHE A 235 46.47 33.85 REMARK 500 ASN A 244 3.05 87.45 REMARK 500 GLU A 252 -169.72 -73.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 308 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASN A 82 OD1 68.9 REMARK 620 3 GLU A 88 OE1 150.6 82.2 REMARK 620 4 ASN A 105 OD1 63.0 125.8 144.8 REMARK 620 5 ASP A 106 O 124.8 165.5 83.6 68.6 REMARK 620 6 ASP A 106 OD1 73.5 102.0 109.0 87.4 79.5 REMARK 620 7 Y6T A 309 O3 112.7 110.7 81.8 69.1 70.4 146.7 REMARK 620 8 Y6T A 309 O4 60.6 69.8 114.8 65.9 119.8 133.4 58.0 REMARK 620 N 1 2 3 4 5 6 7 DBREF 8R5L A 1 280 UNP P16581 LYAM2_HUMAN 22 301 SEQRES 1 A 280 TRP SER TYR ASN THR SER THR GLU ALA MET THR TYR ASP SEQRES 2 A 280 GLU ALA SER ALA TYR CYS GLN GLN ARG TYR THR HIS LEU SEQRES 3 A 280 VAL ALA ILE GLN ASN LYS GLU GLU ILE GLU TYR LEU ASN SEQRES 4 A 280 SER ILE LEU SER TYR SER PRO SER TYR TYR TRP ILE GLY SEQRES 5 A 280 ILE ARG LYS VAL ASN ASN VAL TRP VAL TRP VAL GLY THR SEQRES 6 A 280 GLN LYS PRO LEU THR GLU GLU ALA LYS ASN TRP ALA PRO SEQRES 7 A 280 GLY GLU PRO ASN ASN ARG GLN LYS ASP GLU ASP CYS VAL SEQRES 8 A 280 GLU ILE TYR ILE LYS ARG GLU LYS ASP VAL GLY MET TRP SEQRES 9 A 280 ASN ASP GLU ARG CYS SER LYS LYS LYS LEU ALA LEU CYS SEQRES 10 A 280 TYR THR ALA ALA CYS THR ASN THR SER CYS SER GLY HIS SEQRES 11 A 280 GLY GLU CYS VAL GLU THR ILE ASN ASN TYR THR CYS LYS SEQRES 12 A 280 CYS ASP PRO GLY PHE SER GLY LEU LYS CYS GLU GLN ILE SEQRES 13 A 280 VAL ASN CYS THR ALA LEU GLU SER PRO GLU HIS GLY SER SEQRES 14 A 280 LEU VAL CYS SER HIS PRO LEU GLY ASN PHE SER TYR ASN SEQRES 15 A 280 SER SER CYS SER ILE SER CYS ASP ARG GLY TYR LEU PRO SEQRES 16 A 280 SER SER MET GLU THR MET GLN CYS MET SER SER GLY GLU SEQRES 17 A 280 TRP SER ALA PRO ILE PRO ALA CYS ASN VAL VAL GLU CYS SEQRES 18 A 280 ASP ALA VAL THR ASN PRO ALA ASN GLY PHE VAL GLU CYS SEQRES 19 A 280 PHE GLN ASN PRO GLY SER PHE PRO TRP ASN THR THR CYS SEQRES 20 A 280 THR PHE ASP CYS GLU GLU GLY PHE GLU LEU MET GLY ALA SEQRES 21 A 280 GLN SER LEU GLN CYS THR SER SER GLY ASN TRP ASP ASN SEQRES 22 A 280 GLU LYS PRO THR CYS LYS ALA HET NAG A 301 14 HET NAG A 302 14 HET NAG A 303 14 HET NAG A 304 14 HET NAG A 305 14 HET NAG A 306 14 HET NAG A 307 14 HET CA A 308 1 HET Y6T A 309 157 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM Y6T (2~{S})-3-CYCLOHEXYL-2-[(2~{R},3~{R},4~{S},5~{S}, HETNAM 2 Y6T 6~{R})-2-[(1~{R},2~{R},3~{S},5~{R})-3-ETHYL-2-[(2~{S}, HETNAM 3 Y6T 3~{S},4~{R},5~{S},6~{S})-6-METHYL-3,4,5- HETNAM 4 Y6T TRIS(OXIDANYL)OXAN-2-YL]OXY-5-[3-[1-[3-OXIDANYLIDENE- HETNAM 5 Y6T 3-[(3,6,8-TRISULFONAPHTHALEN-1-YL)AMINO]PROPYL]-1,2,3- HETNAM 6 Y6T TRIAZOL-4-YL]PROPYLCARBAMOYL]CYCLOHEXYL]OXY-6- HETNAM 7 Y6T (HYDROXYMETHYL)-5-OXIDANYL-3-(PHENYLCARBONYLOXY)OXAN- HETNAM 8 Y6T 4-YL]OXY-PROPANOIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 7(C8 H15 N O6) FORMUL 9 CA CA 2+ FORMUL 10 Y6T C55 H73 N5 O25 S3 FORMUL 11 HOH *54(H2 O) HELIX 1 AA1 THR A 11 ARG A 22 1 12 HELIX 2 AA2 ASN A 31 LEU A 42 1 12 SHEET 1 AA1 5 SER A 2 THR A 5 0 SHEET 2 AA1 5 LEU A 114 THR A 119 -1 O CYS A 117 N ASN A 4 SHEET 3 AA1 5 TYR A 49 VAL A 56 1 N TRP A 50 O LEU A 114 SHEET 4 AA1 5 VAL A 59 TRP A 62 -1 O VAL A 59 N VAL A 56 SHEET 5 AA1 5 LYS A 67 PRO A 68 -1 O LYS A 67 N TRP A 62 SHEET 1 AA2 5 HIS A 25 LEU A 26 0 SHEET 2 AA2 5 LEU A 114 THR A 119 -1 O TYR A 118 N HIS A 25 SHEET 3 AA2 5 TYR A 49 VAL A 56 1 N TRP A 50 O LEU A 114 SHEET 4 AA2 5 CYS A 90 ILE A 93 -1 O ILE A 93 N TYR A 49 SHEET 5 AA2 5 TRP A 104 GLU A 107 -1 O GLU A 107 N CYS A 90 SHEET 1 AA3 2 GLY A 131 GLU A 135 0 SHEET 2 AA3 2 TYR A 140 CYS A 144 -1 O LYS A 143 N GLU A 132 SHEET 1 AA4 2 PHE A 148 SER A 149 0 SHEET 2 AA4 2 GLN A 155 ILE A 156 -1 O GLN A 155 N SER A 149 SHEET 1 AA5 2 GLY A 168 LEU A 170 0 SHEET 2 AA5 2 ILE A 187 CYS A 189 -1 O SER A 188 N SER A 169 SHEET 1 AA6 2 SER A 184 CYS A 185 0 SHEET 2 AA6 2 MET A 201 GLN A 202 -1 O MET A 201 N CYS A 185 SHEET 1 AA7 2 TYR A 193 PRO A 195 0 SHEET 2 AA7 2 CYS A 216 VAL A 218 -1 O ASN A 217 N LEU A 194 SHEET 1 AA8 3 GLY A 230 GLU A 233 0 SHEET 2 AA8 3 THR A 246 CYS A 251 -1 O THR A 248 N GLU A 233 SHEET 3 AA8 3 SER A 262 GLN A 264 -1 O LEU A 263 N CYS A 247 SSBOND 1 CYS A 19 CYS A 117 1555 1555 2.04 SSBOND 2 CYS A 90 CYS A 109 1555 1555 2.04 SSBOND 3 CYS A 122 CYS A 133 1555 1555 2.05 SSBOND 4 CYS A 127 CYS A 142 1555 1555 2.06 SSBOND 5 CYS A 144 CYS A 153 1555 1555 2.05 SSBOND 6 CYS A 159 CYS A 203 1555 1555 2.04 SSBOND 7 CYS A 172 CYS A 185 1555 1555 2.06 SSBOND 8 CYS A 189 CYS A 216 1555 1555 2.05 SSBOND 9 CYS A 221 CYS A 265 1555 1555 2.03 SSBOND 10 CYS A 234 CYS A 247 1555 1555 2.06 SSBOND 11 CYS A 251 CYS A 278 1555 1555 2.05 LINK ND2 ASN A 4 C1 NAG A 305 1555 1555 1.43 LINK ND2 ASN A 124 C1 NAG A 306 1555 1555 1.43 LINK ND2 ASN A 139 C1 NAG A 302 1555 1555 1.44 LINK ND2 ASN A 158 C1 NAG A 303 1555 1555 1.43 LINK ND2 ASN A 178 C1 NAG A 304 1555 1555 1.43 LINK ND2 ASN A 182 C1 NAG A 301 1555 1555 1.43 LINK ND2 ASN A 244 C1 NAG A 307 1555 1555 1.43 LINK OE1 GLU A 80 CA CA A 308 1555 1555 2.75 LINK OD1 ASN A 82 CA CA A 308 1555 1555 2.96 LINK OE1 GLU A 88 CA CA A 308 1555 1555 2.66 LINK OD1 ASN A 105 CA CA A 308 1555 1555 2.52 LINK O ASP A 106 CA CA A 308 1555 1555 2.52 LINK OD1 ASP A 106 CA CA A 308 1555 1555 2.19 LINK CA CA A 308 O3 Y6T A 309 1555 1555 2.26 LINK CA CA A 308 O4 Y6T A 309 1555 1555 3.15 CISPEP 1 GLU A 80 PRO A 81 0 -2.02 CRYST1 93.100 72.810 52.530 90.00 94.11 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010741 0.000000 0.000772 0.00000 SCALE2 0.000000 0.013734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019086 0.00000