data_8R6D # _entry.id 8R6D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8R6D pdb_00008r6d 10.2210/pdb8r6d/pdb WWPDB D_1292134782 ? ? BMRB 34880 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-03-06 2 'Structure model' 1 1 2024-03-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8R6D _pdbx_database_status.recvd_initial_deposition_date 2023-11-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'A quadruplex-duplex hybrid with a three-layered hybrid-2 G-quadruplex topology' _pdbx_database_related.db_id 34880 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email weisz@uni-greifswald.de _pdbx_contact_author.name_first Klaus _pdbx_contact_author.name_last Weisz _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2736-6606 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vianney, Y.M.' 1 0000-0002-4576-9935 'Weisz, K.' 2 0000-0002-2736-6606 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Adv Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2198-3844 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first e2309891 _citation.page_last e2309891 _citation.title 'Structural Differences at Quadruplex-Duplex Interfaces Enable Ligand-Induced Topological Transitions.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/advs.202309891 _citation.pdbx_database_id_PubMed 38477454 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vianney, Y.M.' 1 ? primary 'Dierks, D.' 2 ? primary 'Weisz, K.' 3 0000-0002-2736-6606 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'DNA (31-MER)' _entity.formula_weight 9771.240 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DG)(DG)(DG)(DC)(DG)(DC)(DG)(DA)(DA)(DG)(DC)(DA)(DT)(DT)(DC)(DG)(DC)(DG)(DG)(DG) (DG)(DT)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can GGGCGCGAAGCATTCGCGGGGTTAGGGTGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DC n 1 5 DG n 1 6 DC n 1 7 DG n 1 8 DA n 1 9 DA n 1 10 DG n 1 11 DC n 1 12 DA n 1 13 DT n 1 14 DT n 1 15 DC n 1 16 DG n 1 17 DC n 1 18 DG n 1 19 DG n 1 20 DG n 1 21 DG n 1 22 DT n 1 23 DT n 1 24 DA n 1 25 DG n 1 26 DG n 1 27 DG n 1 28 DT n 1 29 DG n 1 30 DG n 1 31 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DT 13 13 13 DT DT A . n A 1 14 DT 14 14 14 DT DT A . n A 1 15 DC 15 15 15 DC DC A . n A 1 16 DG 16 16 16 DG DG A . n A 1 17 DC 17 17 17 DC DC A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DT 22 22 22 DT DT A . n A 1 23 DT 23 23 23 DT DT A . n A 1 24 DA 24 24 24 DA DA A . n A 1 25 DG 25 25 25 DG DG A . n A 1 26 DG 26 26 26 DG DG A . n A 1 27 DG 27 27 27 DG DG A . n A 1 28 DT 28 28 28 DT DT A . n A 1 29 DG 29 29 29 DG DG A . n A 1 30 DG 30 30 30 DG DG A . n A 1 31 DG 31 31 31 DG DG A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8R6D _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8R6D _struct.title 'A quadruplex-duplex hybrid with a three-layered hybrid-2 G-quadruplex topology' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8R6D _struct_keywords.text '(3+1) hybrid, DNA, hybrid-2, G-quadruplex, Quadruplex-duplex hybrid' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8R6D _struct_ref.pdbx_db_accession 8R6D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8R6D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 31 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8R6D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 31 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 31 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'NMR Distance Restraints' 'not applicable' 2 1 'native gel electrophoresis' 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 21 N2 ? ? A DG 1 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 21 N1 ? ? A DG 1 A DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 29 O6 ? ? A DG 1 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 29 N7 ? ? A DG 1 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 2 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 30 N2 ? ? A DG 2 A DG 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 30 N1 ? ? A DG 2 A DG 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 3 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 31 N2 ? ? A DG 3 A DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 31 N1 ? ? A DG 3 A DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 18 N1 ? ? A DC 4 A DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 18 O6 ? ? A DC 4 A DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 18 N2 ? ? A DC 4 A DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 17 N3 ? ? A DG 5 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 17 O2 ? ? A DG 5 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 17 N4 ? ? A DG 5 A DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 16 N1 ? ? A DC 6 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 16 O6 ? ? A DC 6 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 16 N2 ? ? A DC 6 A DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 15 N3 ? ? A DG 7 A DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 15 O2 ? ? A DG 7 A DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 15 N4 ? ? A DG 7 A DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 8 N1 ? ? ? 1_555 A DT 14 N3 ? ? A DA 8 A DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 8 N6 ? ? ? 1_555 A DT 14 O4 ? ? A DA 8 A DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 13 N3 ? ? A DA 9 A DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 13 O4 ? ? A DA 9 A DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DA 12 N7 ? ? A DG 10 A DA 12 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A DG 10 N3 ? ? ? 1_555 A DA 12 N6 ? ? A DG 10 A DA 12 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog31 hydrog ? ? A DG 19 N1 ? ? ? 1_555 A DG 27 O6 ? ? A DG 19 A DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 19 N2 ? ? ? 1_555 A DG 27 N7 ? ? A DG 19 A DG 27 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DG 26 O6 ? ? A DG 20 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DG 26 N7 ? ? A DG 20 A DG 26 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A DG 21 N7 ? ? ? 1_555 A DG 25 N2 ? ? A DG 21 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A DG 21 O6 ? ? ? 1_555 A DG 25 N1 ? ? A DG 21 A DG 25 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A DG 25 N7 ? ? ? 1_555 A DG 29 N2 ? ? A DG 25 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A DG 25 O6 ? ? ? 1_555 A DG 29 N1 ? ? A DG 25 A DG 29 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? A DG 26 N1 ? ? ? 1_555 A DG 30 O6 ? ? A DG 26 A DG 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog40 hydrog ? ? A DG 26 N2 ? ? ? 1_555 A DG 30 N7 ? ? A DG 26 A DG 30 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? A DG 27 N1 ? ? ? 1_555 A DG 31 O6 ? ? A DG 27 A DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? A DG 27 N2 ? ? ? 1_555 A DG 31 N7 ? ? A DG 27 A DG 31 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.82 108.30 3.52 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.19 108.30 1.89 0.30 N 3 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.89 108.30 4.59 0.30 N 4 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.39 121.90 -5.51 0.70 N 5 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 112.35 108.30 4.05 0.30 N 6 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.62 118.90 3.72 0.60 N 7 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.32 121.90 -5.58 0.70 N 8 1 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.66 117.00 -3.34 0.50 N 9 1 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.15 117.70 3.45 0.50 N 10 1 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.46 118.60 -5.14 0.60 N 11 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 110.10 108.30 1.80 0.30 N 12 1 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.68 117.00 -3.32 0.50 N 13 1 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.42 117.70 3.72 0.50 N 14 1 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.86 118.60 -4.74 0.60 N 15 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.35 108.30 4.05 0.30 N 16 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.96 108.30 4.66 0.30 N 17 1 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.36 121.90 -4.54 0.70 N 18 1 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.51 108.30 2.21 0.30 N 19 1 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.65 117.00 -3.35 0.50 N 20 1 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.67 117.70 3.97 0.50 N 21 1 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.09 118.60 -5.51 0.60 N 22 1 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.30 122.90 -3.60 0.60 N 23 1 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.22 108.30 1.92 0.30 N 24 1 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.53 121.90 -5.37 0.70 N 25 1 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.55 121.90 -5.35 0.70 N 26 1 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.55 108.30 5.25 0.30 N 27 1 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 115.00 108.30 6.70 0.30 N 28 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.17 108.30 1.87 0.30 N 29 1 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.29 108.30 2.99 0.30 N 30 1 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.22 108.30 1.92 0.30 N 31 1 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 119.00 122.90 -3.90 0.60 N 32 1 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.34 108.30 2.04 0.30 N 33 1 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.76 117.00 -3.24 0.50 N 34 1 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.32 117.70 3.62 0.50 N 35 1 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.24 118.60 -5.36 0.60 N 36 1 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.64 108.30 4.34 0.30 N 37 1 "C3'" A DG 25 ? ? "O3'" A DG 25 ? ? P A DG 26 ? ? 127.32 119.70 7.62 1.20 Y 38 1 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 110.46 108.30 2.16 0.30 N 39 1 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 110.43 108.30 2.13 0.30 N 40 1 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.79 108.30 2.49 0.30 N 41 1 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.25 122.90 -3.65 0.60 N 42 1 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 112.35 108.30 4.05 0.30 N 43 1 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 111.75 108.30 3.45 0.30 N 44 1 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 110.18 108.30 1.88 0.30 N 45 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.39 108.30 3.09 0.30 N 46 2 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.68 121.90 -5.22 0.70 N 47 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.51 108.30 2.21 0.30 N 48 2 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.74 118.90 3.84 0.60 N 49 2 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.25 121.90 -5.65 0.70 N 50 2 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 111.09 108.30 2.79 0.30 N 51 2 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.77 117.00 -3.23 0.50 N 52 2 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.18 117.70 3.48 0.50 N 53 2 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.47 118.60 -5.13 0.60 N 54 2 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.79 117.00 -3.21 0.50 N 55 2 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.41 117.70 3.71 0.50 N 56 2 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.67 118.60 -4.93 0.60 N 57 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.50 108.30 2.20 0.30 N 58 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.49 108.30 3.19 0.30 N 59 2 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.40 121.90 -4.50 0.70 N 60 2 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.70 108.30 2.40 0.30 N 61 2 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.75 117.00 -3.25 0.50 N 62 2 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.62 117.70 3.92 0.50 N 63 2 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.17 118.60 -5.43 0.60 N 64 2 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.81 122.90 -4.09 0.60 N 65 2 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.26 122.90 -3.64 0.60 N 66 2 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.59 121.90 -5.31 0.70 N 67 2 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 112.87 108.30 4.57 0.30 N 68 2 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.64 108.30 2.34 0.30 N 69 2 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.70 121.90 -5.20 0.70 N 70 2 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 114.83 108.30 6.53 0.30 N 71 2 "C3'" A DG 19 ? ? "O3'" A DG 19 ? ? P A DG 20 ? ? 127.02 119.70 7.32 1.20 Y 72 2 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 113.78 108.30 5.48 0.30 N 73 2 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.17 108.30 1.87 0.30 N 74 2 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 111.65 108.30 3.35 0.30 N 75 2 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.27 122.90 -3.63 0.60 N 76 2 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 111.09 108.30 2.79 0.30 N 77 2 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 118.92 122.90 -3.98 0.60 N 78 2 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 111.39 108.30 3.09 0.30 N 79 2 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.74 117.00 -3.26 0.50 N 80 2 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.35 117.70 3.65 0.50 N 81 2 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 112.66 118.60 -5.94 0.60 N 82 2 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.22 108.30 3.92 0.30 N 83 2 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 112.39 108.30 4.09 0.30 N 84 2 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 110.97 108.30 2.67 0.30 N 85 2 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.39 108.30 2.09 0.30 N 86 2 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 118.68 122.90 -4.22 0.60 N 87 2 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 112.40 108.30 4.10 0.30 N 88 2 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 111.66 108.30 3.36 0.30 N 89 2 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 110.47 108.30 2.17 0.30 N 90 3 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.30 108.30 3.00 0.30 N 91 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.26 108.30 1.96 0.30 N 92 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.61 108.30 4.31 0.30 N 93 3 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.42 121.90 -5.48 0.70 N 94 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.96 108.30 2.66 0.30 N 95 3 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.36 121.90 -5.54 0.70 N 96 3 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.66 117.00 -3.34 0.50 N 97 3 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.16 117.70 3.46 0.50 N 98 3 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.57 118.60 -5.03 0.60 N 99 3 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.77 117.00 -3.23 0.50 N 100 3 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.48 117.70 3.78 0.50 N 101 3 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.61 118.60 -4.99 0.60 N 102 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.30 108.30 2.00 0.30 N 103 3 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.48 108.30 4.18 0.30 N 104 3 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.48 121.90 -4.42 0.70 N 105 3 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.31 117.70 3.61 0.50 N 106 3 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.07 118.60 -5.53 0.60 N 107 3 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.29 122.90 -3.61 0.60 N 108 3 "C3'" A DT 13 ? ? "O3'" A DT 13 ? ? P A DT 14 ? ? 127.14 119.70 7.44 1.20 Y 109 3 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.65 121.90 -5.25 0.70 N 110 3 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.37 108.30 2.07 0.30 N 111 3 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.68 121.90 -5.22 0.70 N 112 3 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.73 108.30 5.43 0.30 N 113 3 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.76 108.30 6.46 0.30 N 114 3 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.04 108.30 3.74 0.30 N 115 3 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.75 108.30 2.45 0.30 N 116 3 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 118.78 122.90 -4.12 0.60 N 117 3 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.94 108.30 2.64 0.30 N 118 3 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.57 117.00 -3.43 0.50 N 119 3 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.35 117.70 3.65 0.50 N 120 3 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 112.40 118.60 -6.20 0.60 N 121 3 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.22 108.30 3.92 0.30 N 122 3 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 111.79 108.30 3.49 0.30 N 123 3 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 112.55 108.30 4.25 0.30 N 124 3 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 112.11 108.30 3.81 0.30 N 125 3 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 110.29 108.30 1.99 0.30 N 126 4 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.19 108.30 3.89 0.30 N 127 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.47 108.30 2.17 0.30 N 128 4 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.80 108.30 3.50 0.30 N 129 4 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.54 121.90 -5.36 0.70 N 130 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 110.41 108.30 2.11 0.30 N 131 4 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.57 121.90 -5.33 0.70 N 132 4 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.62 117.00 -3.38 0.50 N 133 4 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.18 117.70 3.48 0.50 N 134 4 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.53 118.60 -5.07 0.60 N 135 4 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.74 117.00 -3.26 0.50 N 136 4 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.43 117.70 3.73 0.50 N 137 4 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.95 118.60 -4.65 0.60 N 138 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.56 108.30 4.26 0.30 N 139 4 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.90 108.30 4.60 0.30 N 140 4 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.29 121.90 -4.61 0.70 N 141 4 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.17 108.30 1.87 0.30 N 142 4 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.75 117.00 -3.25 0.50 N 143 4 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.58 117.70 3.88 0.50 N 144 4 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.14 118.60 -5.46 0.60 N 145 4 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.73 122.90 -4.17 0.60 N 146 4 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.23 108.30 1.93 0.30 N 147 4 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 112.47 108.30 4.17 0.30 N 148 4 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.46 121.90 -5.44 0.70 N 149 4 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.98 108.30 2.68 0.30 N 150 4 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.47 121.90 -5.43 0.70 N 151 4 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.81 108.30 5.51 0.30 N 152 4 "C3'" A DG 19 ? ? "O3'" A DG 19 ? ? P A DG 20 ? ? 127.05 119.70 7.35 1.20 Y 153 4 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.11 108.30 5.81 0.30 N 154 4 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.83 108.30 2.53 0.30 N 155 4 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.20 108.30 3.90 0.30 N 156 4 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 118.61 122.90 -4.29 0.60 N 157 4 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.74 108.30 2.44 0.30 N 158 4 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 119.14 122.90 -3.76 0.60 N 159 4 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 111.40 108.30 3.10 0.30 N 160 4 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.68 117.00 -3.32 0.50 N 161 4 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.48 117.70 3.78 0.50 N 162 4 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.12 118.60 -5.48 0.60 N 163 4 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 111.96 108.30 3.66 0.30 N 164 4 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 111.59 108.30 3.29 0.30 N 165 4 "C3'" A DG 26 ? ? "O3'" A DG 26 ? ? P A DG 27 ? ? 127.00 119.70 7.30 1.20 Y 166 4 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.16 122.90 -3.74 0.60 N 167 4 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 113.43 108.30 5.13 0.30 N 168 4 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 111.85 108.30 3.55 0.30 N 169 4 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 110.74 108.30 2.44 0.30 N 170 5 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.56 108.30 3.26 0.30 N 171 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.05 108.30 3.75 0.30 N 172 5 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.37 121.90 -5.53 0.70 N 173 5 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 122.51 118.90 3.61 0.60 N 174 5 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.46 121.90 -5.44 0.70 N 175 5 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 112.54 108.30 4.24 0.30 N 176 5 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.61 117.00 -3.39 0.50 N 177 5 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.15 117.70 3.45 0.50 N 178 5 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.15 118.60 -5.45 0.60 N 179 5 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.32 108.30 3.02 0.30 N 180 5 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.94 117.00 -3.06 0.50 N 181 5 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.49 117.70 3.79 0.50 N 182 5 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.02 118.60 -4.58 0.60 N 183 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.01 108.30 4.71 0.30 N 184 5 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 112.47 108.30 4.17 0.30 N 185 5 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.61 121.90 -4.29 0.70 N 186 5 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.24 108.30 2.94 0.30 N 187 5 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.56 117.70 3.86 0.50 N 188 5 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.66 118.60 -4.94 0.60 N 189 5 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.20 122.90 -3.70 0.60 N 190 5 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 112.20 108.30 3.90 0.30 N 191 5 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.46 121.90 -5.44 0.70 N 192 5 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.53 108.30 2.23 0.30 N 193 5 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.49 121.90 -5.41 0.70 N 194 5 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.46 108.30 2.16 0.30 N 195 5 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.22 108.30 4.92 0.30 N 196 5 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.67 108.30 6.37 0.30 N 197 5 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 111.92 108.30 3.62 0.30 N 198 5 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.42 108.30 4.12 0.30 N 199 5 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.17 122.90 -3.73 0.60 N 200 5 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.49 108.30 2.19 0.30 N 201 5 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.75 117.00 -3.25 0.50 N 202 5 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.43 117.70 3.73 0.50 N 203 5 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.39 118.60 -5.21 0.60 N 204 5 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.10 108.30 3.80 0.30 N 205 5 "C3'" A DG 25 ? ? "O3'" A DG 25 ? ? P A DG 26 ? ? 127.29 119.70 7.59 1.20 Y 206 5 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 110.57 108.30 2.27 0.30 N 207 5 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 110.49 108.30 2.19 0.30 N 208 5 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.48 108.30 2.18 0.30 N 209 5 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.23 122.90 -3.67 0.60 N 210 5 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 112.46 108.30 4.16 0.30 N 211 5 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 111.90 108.30 3.60 0.30 N 212 5 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 110.47 108.30 2.17 0.30 N 213 6 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.57 108.30 3.27 0.30 N 214 6 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.97 108.30 3.67 0.30 N 215 6 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.47 121.90 -5.43 0.70 N 216 6 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.74 121.90 -5.16 0.70 N 217 6 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 112.66 108.30 4.36 0.30 N 218 6 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.76 117.00 -3.24 0.50 N 219 6 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.20 117.70 3.50 0.50 N 220 6 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.08 118.60 -5.52 0.60 N 221 6 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.73 117.00 -3.27 0.50 N 222 6 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.43 117.70 3.73 0.50 N 223 6 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.93 118.60 -4.67 0.60 N 224 6 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.30 108.30 2.00 0.30 N 225 6 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.19 108.30 2.89 0.30 N 226 6 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.46 121.90 -4.44 0.70 N 227 6 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.82 108.30 2.52 0.30 N 228 6 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.85 117.00 -3.15 0.50 N 229 6 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.55 117.70 3.85 0.50 N 230 6 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.34 118.60 -5.26 0.60 N 231 6 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.19 122.90 -3.71 0.60 N 232 6 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.30 122.90 -3.60 0.60 N 233 6 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 110.41 108.30 2.11 0.30 N 234 6 N1 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 122.53 118.90 3.63 0.60 N 235 6 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.54 121.90 -5.36 0.70 N 236 6 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.51 121.90 -5.39 0.70 N 237 6 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 110.53 108.30 2.23 0.30 N 238 6 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 114.37 108.30 6.07 0.30 N 239 6 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 115.40 108.30 7.10 0.30 N 240 6 "C3'" A DG 20 ? ? "O3'" A DG 20 ? ? P A DG 21 ? ? 127.00 119.70 7.30 1.20 Y 241 6 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 111.50 108.30 3.20 0.30 N 242 6 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 113.05 108.30 4.75 0.30 N 243 6 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.28 108.30 1.98 0.30 N 244 6 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 118.97 122.90 -3.93 0.60 N 245 6 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.14 108.30 1.84 0.30 N 246 6 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.80 117.00 -3.20 0.50 N 247 6 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.36 117.70 3.66 0.50 N 248 6 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.15 118.60 -5.45 0.60 N 249 6 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.37 108.30 4.07 0.30 N 250 6 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 111.29 108.30 2.99 0.30 N 251 6 "O4'" A DG 27 ? ? "C1'" A DG 27 ? ? N9 A DG 27 ? ? 110.84 108.30 2.54 0.30 N 252 6 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.37 108.30 2.07 0.30 N 253 6 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.13 122.90 -3.77 0.60 N 254 6 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 112.62 108.30 4.32 0.30 N 255 6 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 111.65 108.30 3.35 0.30 N 256 7 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.31 108.30 3.01 0.30 N 257 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.30 108.30 2.00 0.30 N 258 7 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.71 108.30 4.41 0.30 N 259 7 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.52 121.90 -5.38 0.70 N 260 7 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.73 121.90 -5.17 0.70 N 261 7 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 112.26 108.30 3.96 0.30 N 262 7 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.64 117.00 -3.36 0.50 N 263 7 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.14 117.70 3.44 0.50 N 264 7 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.48 118.60 -5.12 0.60 N 265 7 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.88 117.00 -3.12 0.50 N 266 7 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.53 117.70 3.83 0.50 N 267 7 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.61 118.60 -4.99 0.60 N 268 7 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.58 108.30 2.28 0.30 N 269 7 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.34 108.30 3.04 0.30 N 270 7 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.50 121.90 -4.40 0.70 N 271 7 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.93 117.00 -3.07 0.50 N 272 7 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.29 117.70 3.59 0.50 N 273 7 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.57 118.60 -5.03 0.60 N 274 7 "O4'" A DT 13 ? ? "C1'" A DT 13 ? ? N1 A DT 13 ? ? 111.58 108.30 3.28 0.30 N 275 7 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 118.74 122.90 -4.16 0.60 N 276 7 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 112.95 108.30 4.65 0.30 N 277 7 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.51 121.90 -5.39 0.70 N 278 7 "O4'" A DG 16 ? ? "C1'" A DG 16 ? ? N9 A DG 16 ? ? 110.77 108.30 2.47 0.30 N 279 7 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.56 121.90 -5.34 0.70 N 280 7 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.86 108.30 5.56 0.30 N 281 7 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.73 108.30 6.43 0.30 N 282 7 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.16 108.30 1.86 0.30 N 283 7 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 110.77 108.30 2.47 0.30 N 284 7 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.09 122.90 -3.81 0.60 N 285 7 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 111.34 108.30 3.04 0.30 N 286 7 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 118.30 122.90 -4.60 0.60 N 287 7 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 111.93 108.30 3.63 0.30 N 288 7 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.90 117.00 -3.10 0.50 N 289 7 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.40 117.70 3.70 0.50 N 290 7 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.39 118.60 -5.21 0.60 N 291 7 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.25 108.30 3.95 0.30 N 292 7 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 111.33 108.30 3.03 0.30 N 293 7 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.34 108.30 2.04 0.30 N 294 7 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.27 122.90 -3.63 0.60 N 295 7 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 112.78 108.30 4.48 0.30 N 296 7 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 112.11 108.30 3.81 0.30 N 297 8 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.92 108.30 3.62 0.30 N 298 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.47 108.30 2.17 0.30 N 299 8 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 113.13 108.30 4.83 0.30 N 300 8 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.43 121.90 -5.47 0.70 N 301 8 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.66 121.90 -5.24 0.70 N 302 8 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.61 117.00 -3.39 0.50 N 303 8 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.24 117.70 3.54 0.50 N 304 8 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.33 118.60 -5.27 0.60 N 305 8 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.83 117.00 -3.17 0.50 N 306 8 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.46 117.70 3.76 0.50 N 307 8 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 113.92 118.60 -4.68 0.60 N 308 8 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.50 108.30 2.20 0.30 N 309 8 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.77 108.30 3.47 0.30 N 310 8 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.52 121.90 -4.38 0.70 N 311 8 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.77 108.30 2.47 0.30 N 312 8 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.87 117.00 -3.13 0.50 N 313 8 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.55 117.70 3.85 0.50 N 314 8 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.20 118.60 -5.40 0.60 N 315 8 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.07 122.90 -3.83 0.60 N 316 8 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.28 122.90 -3.62 0.60 N 317 8 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.47 121.90 -5.43 0.70 N 318 8 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.58 121.90 -5.32 0.70 N 319 8 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 112.05 108.30 3.75 0.30 N 320 8 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 114.98 108.30 6.68 0.30 N 321 8 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.94 108.30 6.64 0.30 N 322 8 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.61 108.30 2.31 0.30 N 323 8 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 110.16 108.30 1.86 0.30 N 324 8 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.27 122.90 -3.63 0.60 N 325 8 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 118.85 122.90 -4.05 0.60 N 326 8 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.71 117.00 -3.29 0.50 N 327 8 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.56 117.70 3.86 0.50 N 328 8 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.30 118.60 -5.30 0.60 N 329 8 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.45 108.30 4.15 0.30 N 330 8 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 110.74 108.30 2.44 0.30 N 331 8 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.02 122.90 -3.88 0.60 N 332 8 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 112.47 108.30 4.17 0.30 N 333 8 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 111.33 108.30 3.03 0.30 N 334 9 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 112.23 108.30 3.93 0.30 N 335 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.36 108.30 2.06 0.30 N 336 9 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.72 121.90 -5.18 0.70 N 337 9 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.52 121.90 -5.38 0.70 N 338 9 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.68 117.00 -3.32 0.50 N 339 9 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.13 117.70 3.43 0.50 N 340 9 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.44 118.60 -5.16 0.60 N 341 9 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.88 117.00 -3.12 0.50 N 342 9 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.44 117.70 3.74 0.50 N 343 9 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.06 118.60 -4.54 0.60 N 344 9 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.39 108.30 2.09 0.30 N 345 9 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 111.66 108.30 3.36 0.30 N 346 9 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.44 121.90 -4.46 0.70 N 347 9 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.88 108.30 2.58 0.30 N 348 9 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.65 117.00 -3.35 0.50 N 349 9 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.59 117.70 3.89 0.50 N 350 9 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.21 118.60 -5.39 0.60 N 351 9 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.16 122.90 -3.74 0.60 N 352 9 "O4'" A DT 14 ? ? "C1'" A DT 14 ? ? N1 A DT 14 ? ? 110.38 108.30 2.08 0.30 N 353 9 C6 A DT 14 ? ? C5 A DT 14 ? ? C7 A DT 14 ? ? 119.08 122.90 -3.82 0.60 N 354 9 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.56 121.90 -5.34 0.70 N 355 9 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.72 121.90 -5.18 0.70 N 356 9 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 114.40 108.30 6.10 0.30 N 357 9 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 114.89 108.30 6.59 0.30 N 358 9 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.80 108.30 2.50 0.30 N 359 9 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 110.39 108.30 2.09 0.30 N 360 9 C6 A DT 22 ? ? C5 A DT 22 ? ? C7 A DT 22 ? ? 119.19 122.90 -3.71 0.60 N 361 9 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.27 108.30 1.97 0.30 N 362 9 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 119.11 122.90 -3.79 0.60 N 363 9 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.39 108.30 2.09 0.30 N 364 9 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.71 117.00 -3.29 0.50 N 365 9 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.58 117.70 3.88 0.50 N 366 9 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.26 118.60 -5.34 0.60 N 367 9 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 112.90 108.30 4.60 0.30 N 368 9 "C3'" A DG 25 ? ? "O3'" A DG 25 ? ? P A DG 26 ? ? 127.21 119.70 7.51 1.20 Y 369 9 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 110.50 108.30 2.20 0.30 N 370 9 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.54 108.30 2.24 0.30 N 371 9 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.13 122.90 -3.77 0.60 N 372 9 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 114.07 108.30 5.77 0.30 N 373 9 "C3'" A DG 29 ? ? "O3'" A DG 29 ? ? P A DG 30 ? ? 126.95 119.70 7.25 1.20 Y 374 9 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 112.08 108.30 3.78 0.30 N 375 9 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 111.64 108.30 3.34 0.30 N 376 10 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.34 108.30 3.04 0.30 N 377 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.50 108.30 3.20 0.30 N 378 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.58 108.30 4.28 0.30 N 379 10 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 116.80 121.90 -5.10 0.70 N 380 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.49 108.30 4.19 0.30 N 381 10 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 116.72 121.90 -5.18 0.70 N 382 10 C4 A DA 8 ? ? C5 A DA 8 ? ? C6 A DA 8 ? ? 113.66 117.00 -3.34 0.50 N 383 10 C5 A DA 8 ? ? C6 A DA 8 ? ? N1 A DA 8 ? ? 121.20 117.70 3.50 0.50 N 384 10 N1 A DA 8 ? ? C6 A DA 8 ? ? N6 A DA 8 ? ? 113.23 118.60 -5.37 0.60 N 385 10 C4 A DA 9 ? ? C5 A DA 9 ? ? C6 A DA 9 ? ? 113.83 117.00 -3.17 0.50 N 386 10 C5 A DA 9 ? ? C6 A DA 9 ? ? N1 A DA 9 ? ? 121.41 117.70 3.71 0.50 N 387 10 N1 A DA 9 ? ? C6 A DA 9 ? ? N6 A DA 9 ? ? 114.10 118.60 -4.50 0.60 N 388 10 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.59 108.30 3.29 0.30 N 389 10 N3 A DC 11 ? ? C2 A DC 11 ? ? O2 A DC 11 ? ? 117.00 121.90 -4.90 0.70 N 390 10 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.26 108.30 1.96 0.30 N 391 10 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.76 117.00 -3.24 0.50 N 392 10 C5 A DA 12 ? ? C6 A DA 12 ? ? N1 A DA 12 ? ? 121.65 117.70 3.95 0.50 N 393 10 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 113.16 118.60 -5.44 0.60 N 394 10 C6 A DT 13 ? ? C5 A DT 13 ? ? C7 A DT 13 ? ? 119.15 122.90 -3.75 0.60 N 395 10 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 111.12 108.30 2.82 0.30 N 396 10 N3 A DC 15 ? ? C2 A DC 15 ? ? O2 A DC 15 ? ? 116.66 121.90 -5.24 0.70 N 397 10 "O4'" A DC 17 ? ? "C1'" A DC 17 ? ? N1 A DC 17 ? ? 110.55 108.30 2.25 0.30 N 398 10 N1 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 122.55 118.90 3.65 0.60 N 399 10 N3 A DC 17 ? ? C2 A DC 17 ? ? O2 A DC 17 ? ? 116.31 121.90 -5.59 0.70 N 400 10 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 112.68 108.30 4.38 0.30 N 401 10 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 113.14 108.30 4.84 0.30 N 402 10 "C3'" A DG 19 ? ? "O3'" A DG 19 ? ? P A DG 20 ? ? 127.25 119.70 7.55 1.20 Y 403 10 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 113.76 108.30 5.46 0.30 N 404 10 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.22 108.30 1.92 0.30 N 405 10 "O4'" A DT 22 ? ? "C1'" A DT 22 ? ? N1 A DT 22 ? ? 112.41 108.30 4.11 0.30 N 406 10 "O4'" A DT 23 ? ? "C1'" A DT 23 ? ? N1 A DT 23 ? ? 110.87 108.30 2.57 0.30 N 407 10 C6 A DT 23 ? ? C5 A DT 23 ? ? C7 A DT 23 ? ? 119.15 122.90 -3.75 0.60 N 408 10 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.73 108.30 2.43 0.30 N 409 10 C4 A DA 24 ? ? C5 A DA 24 ? ? C6 A DA 24 ? ? 113.87 117.00 -3.13 0.50 N 410 10 C5 A DA 24 ? ? C6 A DA 24 ? ? N1 A DA 24 ? ? 121.21 117.70 3.51 0.50 N 411 10 N1 A DA 24 ? ? C6 A DA 24 ? ? N6 A DA 24 ? ? 113.07 118.60 -5.53 0.60 N 412 10 "O4'" A DG 25 ? ? "C1'" A DG 25 ? ? N9 A DG 25 ? ? 111.48 108.30 3.18 0.30 N 413 10 "O4'" A DG 26 ? ? "C1'" A DG 26 ? ? N9 A DG 26 ? ? 111.72 108.30 3.42 0.30 N 414 10 "O4'" A DT 28 ? ? "C1'" A DT 28 ? ? N1 A DT 28 ? ? 110.98 108.30 2.68 0.30 N 415 10 C6 A DT 28 ? ? C5 A DT 28 ? ? C7 A DT 28 ? ? 119.21 122.90 -3.69 0.60 N 416 10 "O4'" A DG 29 ? ? "C1'" A DG 29 ? ? N9 A DG 29 ? ? 113.00 108.30 4.70 0.30 N 417 10 "O4'" A DG 30 ? ? "C1'" A DG 30 ? ? N9 A DG 30 ? ? 113.15 108.30 4.85 0.30 N 418 10 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 110.36 108.30 2.06 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 4 DA A 12 ? ? 0.057 'SIDE CHAIN' 2 4 DC A 17 ? ? 0.064 'SIDE CHAIN' 3 5 DG A 2 ? ? 0.055 'SIDE CHAIN' 4 5 DC A 17 ? ? 0.065 'SIDE CHAIN' 5 6 DT A 22 ? ? 0.065 'SIDE CHAIN' 6 7 DC A 6 ? ? 0.065 'SIDE CHAIN' 7 10 DG A 19 ? ? 0.059 'SIDE CHAIN' 8 10 DG A 20 ? ? 0.063 'SIDE CHAIN' 9 10 DG A 27 ? ? 0.062 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 8R6D _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8R6D _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM DNA (31-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' 'Sample 1 - Natural abundance' solution '298 K, 20 mM potassium phosphate buffer + 100 mM KCl, pH 7.0.' 2 '0.2 mM [U-10% 13C; U-10% 15N]-Gua DNA (31-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' 'selectively labeled 10% 13C and 15N dG' solution '298 K, 20 mM potassium phosphate buffer + 100 mM KCl, pH 7.0.' 3 '0.2 mM [U-10% 15N]-Gua DNA (31-MER), 90% H2O/10% D2O' '90% H2O/10% D2O' 'selectively labeled 10% 15N dG' solution '298 K, 20 mM potassium phosphate buffer + 100 mM KCl, pH 7.0.' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'DNA (31-MER)' 1 ? mM 'natural abundance' 2 'DNA (31-MER)' 0.2 ? mM '[U-10% 13C; U-10% 15N]-Gua' 3 'DNA (31-MER)' 0.2 ? mM '[U-10% 15N]-Gua' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.details '298 K, 20 mM potassium phosphate buffer + 100 mM KCl, pH 7.0' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D DQF-COSY' 1 isotropic 3 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 8R6D _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' 'CcpNmr Analysis' 2.4.2 CCPN 2 'structure calculation' Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 refinement Amber 18 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 4 'peak picking' 'CcpNmr Analysis' 2.4.2 CCPN 5 processing TopSpin 4.0.7 'Bruker Biospin' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8R6D 'double helix' 8R6D 'b-form double helix' 8R6D 'hairpin loop' 8R6D 'mismatched base pair' 8R6D 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DG 21 1_555 -1.921 -3.286 0.010 -8.520 -1.645 88.146 1 A_DG1:DG21_A A 1 ? A 21 ? 6 3 1 A DG 2 1_555 A DG 30 1_555 -1.710 -3.423 0.296 3.426 5.258 88.535 2 A_DG2:DG30_A A 2 ? A 30 ? 6 3 1 A DG 20 1_555 A DG 26 1_555 1.683 3.445 -0.145 -2.896 -3.489 -90.267 3 A_DG20:DG26_A A 20 ? A 26 ? 6 3 1 A DG 29 1_555 A DG 25 1_555 1.855 3.259 0.066 -1.832 2.558 -92.026 4 A_DG29:DG25_A A 29 ? A 25 ? 6 3 1 A DA 12 1_555 A DG 10 1_555 -6.406 -4.242 1.167 -29.504 -12.645 11.281 5 A_DA12:DG10_A A 12 ? A 10 ? 11 9 1 A DT 13 1_555 A DA 9 1_555 -0.097 0.046 -0.069 -24.452 2.410 0.229 6 A_DT13:DA9_A A 13 ? A 9 ? 20 1 1 A DT 14 1_555 A DA 8 1_555 -0.182 0.022 -0.148 -13.050 -7.342 3.115 7 A_DT14:DA8_A A 14 ? A 8 ? 20 1 1 A DC 15 1_555 A DG 7 1_555 0.201 -0.128 -0.392 -1.418 -3.578 -0.773 8 A_DC15:DG7_A A 15 ? A 7 ? 19 1 1 A DG 16 1_555 A DC 6 1_555 -0.306 -0.057 -0.103 -6.726 -5.059 0.170 9 A_DG16:DC6_A A 16 ? A 6 ? 19 1 1 A DC 17 1_555 A DG 5 1_555 0.416 -0.089 0.025 -1.933 -4.888 0.355 10 A_DC17:DG5_A A 17 ? A 5 ? 19 1 1 A DG 18 1_555 A DC 4 1_555 -0.366 -0.074 -0.263 -15.337 -12.443 0.107 11 A_DG18:DC4_A A 18 ? A 4 ? 19 1 1 A DG 19 1_555 A DG 27 1_555 1.922 3.203 0.040 1.998 0.843 -91.256 12 A_DG19:DG27_A A 19 ? A 27 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DG 21 1_555 A DG 2 1_555 A DG 30 1_555 0.872 3.159 -0.411 -165.222 58.585 -5.438 -1.475 0.735 -0.253 -30.041 -84.720 -175.306 1 AA_DG1DG2:DG30DG21_AA A 1 ? A 21 ? A 2 ? A 30 ? 1 A DG 2 1_555 A DG 30 1_555 A DG 20 1_555 A DG 26 1_555 1.798 3.348 -0.047 2.723 -7.753 -179.799 -1.674 0.899 -0.047 3.876 1.362 -179.800 2 AA_DG2DG20:DG26DG30_AA A 2 ? A 30 ? A 20 ? A 26 ? 1 A DG 20 1_555 A DG 26 1_555 A DG 29 1_555 A DG 25 1_555 -1.210 -3.062 1.099 165.920 -58.754 20.774 -1.368 1.069 0.082 -29.922 -84.499 176.081 3 AA_DG20DG29:DG25DG26_AA A 20 ? A 26 ? A 29 ? A 25 ? 1 A DA 12 1_555 A DG 10 1_555 A DT 13 1_555 A DA 9 1_555 -0.241 1.014 3.295 -0.954 11.770 54.657 0.377 0.200 3.433 12.654 1.025 55.822 4 AA_DA12DT13:DA9DG10_AA A 12 ? A 10 ? A 13 ? A 9 ? 1 A DT 13 1_555 A DA 9 1_555 A DT 14 1_555 A DA 8 1_555 0.186 -0.532 3.208 1.397 1.605 29.308 -1.385 -0.073 3.180 3.167 -2.757 29.383 5 AA_DT13DT14:DA8DA9_AA A 13 ? A 9 ? A 14 ? A 8 ? 1 A DT 14 1_555 A DA 8 1_555 A DC 15 1_555 A DG 7 1_555 0.375 0.362 3.118 3.015 2.458 38.514 0.256 -0.210 3.153 3.715 -4.557 38.703 6 AA_DT14DC15:DG7DA8_AA A 14 ? A 8 ? A 15 ? A 7 ? 1 A DC 15 1_555 A DG 7 1_555 A DG 16 1_555 A DC 6 1_555 -1.090 0.426 3.487 -5.262 4.197 32.527 -0.029 0.936 3.639 7.394 9.271 33.198 7 AA_DC15DG16:DC6DG7_AA A 15 ? A 7 ? A 16 ? A 6 ? 1 A DG 16 1_555 A DC 6 1_555 A DC 17 1_555 A DG 5 1_555 0.064 -0.461 3.290 -0.900 3.413 36.573 -1.197 -0.224 3.233 5.423 1.430 36.737 8 AA_DG16DC17:DG5DC6_AA A 16 ? A 6 ? A 17 ? A 5 ? 1 A DC 17 1_555 A DG 5 1_555 A DG 18 1_555 A DC 4 1_555 1.158 -0.195 3.534 6.616 11.408 33.627 -2.107 -0.831 3.450 18.843 -10.929 36.051 9 AA_DC17DG18:DC4DG5_AA A 17 ? A 5 ? A 18 ? A 4 ? 1 A DG 18 1_555 A DC 4 1_555 A DG 19 1_555 A DG 27 1_555 2.980 0.888 -3.588 96.246 -143.002 69.368 -0.615 -2.205 -1.283 -72.862 -49.039 173.731 10 AA_DG18DG19:DG27DC4_AA A 18 ? A 4 ? A 19 ? A 27 ? # _pdbx_audit_support.funding_organization 'German Research Foundation (DFG)' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number 410497337 _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE NEO' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8R6D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_