HEADER LIGASE 24-NOV-23 8R79 TITLE THE D2 DOMAIN OF HUMAN DTX3L COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE DTX3L; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: B-LYMPHOMA- AND BAL-ASSOCIATED PROTEIN,PROTEIN DELTEX-3- COMPND 5 LIKE,RING-TYPE E3 UBIQUITIN TRANSFERASE DTX3L,RHYSIN-2,RHYSIN2; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DTX3L, BBAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS UBIQUITIN LIGASE, HOMO 4-MER, N-TERMINAL DOMAIN, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.VELA-RODRIGUEZ,L.LEHTIO,M.MAKSIMAINEN,R.DUMAN,A.WAGNER,T.GLUMOFF REVDAT 1 27-DEC-23 8R79 0 JRNL AUTH C.VELA-RODRIGUEZ,C.YANG,H.I.ALANEN,R.EKI,T.A.ABBAS, JRNL AUTH 2 M.M.MAKSIMAINEN,T.GLUMOFF,R.DUMAN,A.WAGNER,B.M.PASCHAL, JRNL AUTH 3 L.LEHTIO JRNL TITL OLIGOMERISATION MEDIATED BY THE D2 DOMAIN OF DTX3L IS JRNL TITL 2 CRITICAL FOR DTX3L-PARP9 READING FUNCTION OF JRNL TITL 3 MONO-ADP-RIBOSYLATED ANDROGEN RECEPTOR. JRNL REF BIORXIV 2023 JRNL REFN ISSN 2692-8205 JRNL PMID 38076829 JRNL DOI 10.1101/2023.11.29.569193 REMARK 2 REMARK 2 RESOLUTION. 2.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 56.6 REMARK 3 NUMBER OF REFLECTIONS : 11299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1255 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.18 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 6.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 11 REMARK 3 BIN FREE R VALUE : 0.5140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.428 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.282 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.950 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1971 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1857 ; 0.002 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2649 ; 1.509 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4280 ; 1.239 ; 1.589 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 236 ; 6.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;36.584 ;23.243 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;15.339 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2224 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 452 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 956 ; 4.127 ; 5.450 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 955 ; 4.124 ; 5.449 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1188 ; 5.944 ; 8.163 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1189 ; 5.941 ; 8.164 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1013 ; 5.204 ; 6.057 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1009 ; 5.178 ; 6.056 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1455 ; 7.768 ; 8.868 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2043 ; 9.442 ;63.280 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2044 ; 9.441 ;63.294 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8R79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1292134828. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I23 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 2.7552 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12554 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.180 REMARK 200 RESOLUTION RANGE LOW (A) : 70.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.7 REMARK 200 DATA REDUNDANCY : 90.60 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.2 REMARK 200 DATA REDUNDANCY IN SHELL : 55.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M (NH4)2SO4, 100 MM BISTRIS, PH REMARK 280 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.51850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.44650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.44650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 10.25925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.44650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.44650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.77775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.44650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.44650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 10.25925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.44650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.44650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.77775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 20.51850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 126 REMARK 465 VAL A 127 REMARK 465 ASP A 128 REMARK 465 SER A 129 REMARK 465 CYS A 130 REMARK 465 LEU A 131 REMARK 465 PHE A 192 REMARK 465 LEU A 193 REMARK 465 GLU A 194 REMARK 465 SER A 195 REMARK 465 GLU A 196 REMARK 465 GLN A 197 REMARK 465 LYS A 198 REMARK 465 GLN A 199 REMARK 465 GLN A 200 REMARK 465 ALA B 126 REMARK 465 VAL B 127 REMARK 465 ASP B 128 REMARK 465 SER B 129 REMARK 465 CYS B 130 REMARK 465 LEU B 131 REMARK 465 PHE B 192 REMARK 465 LEU B 193 REMARK 465 GLU B 194 REMARK 465 SER B 195 REMARK 465 GLU B 196 REMARK 465 GLN B 197 REMARK 465 LYS B 198 REMARK 465 GLN B 199 REMARK 465 GLN B 200 REMARK 465 ALA C 126 REMARK 465 VAL C 127 REMARK 465 ASP C 128 REMARK 465 SER C 129 REMARK 465 CYS C 130 REMARK 465 LEU C 131 REMARK 465 PHE C 192 REMARK 465 LEU C 193 REMARK 465 GLU C 194 REMARK 465 SER C 195 REMARK 465 GLU C 196 REMARK 465 GLN C 197 REMARK 465 LYS C 198 REMARK 465 GLN C 199 REMARK 465 GLN C 200 REMARK 465 ALA D 126 REMARK 465 VAL D 127 REMARK 465 ASP D 128 REMARK 465 SER D 129 REMARK 465 CYS D 130 REMARK 465 LEU D 131 REMARK 465 PHE D 192 REMARK 465 LEU D 193 REMARK 465 GLU D 194 REMARK 465 SER D 195 REMARK 465 GLU D 196 REMARK 465 GLN D 197 REMARK 465 LYS D 198 REMARK 465 GLN D 199 REMARK 465 GLN D 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 GLN A 179 CG CD OE1 NE2 REMARK 470 GLN C 179 CG CD OE1 NE2 REMARK 470 HIS D 168 CG ND1 CD2 CE1 NE2 REMARK 470 GLN D 179 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU D 190 OE2 GLU D 190 7554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 177 157.15 -48.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 8R79 A 126 200 UNP Q8TDB6 DTX3L_HUMAN 126 200 DBREF 8R79 B 126 200 UNP Q8TDB6 DTX3L_HUMAN 126 200 DBREF 8R79 C 126 200 UNP Q8TDB6 DTX3L_HUMAN 126 200 DBREF 8R79 D 126 200 UNP Q8TDB6 DTX3L_HUMAN 126 200 SEQRES 1 A 75 ALA VAL ASP SER CYS LEU GLN LYS ILE PHE LEU THR VAL SEQRES 2 A 75 THR ALA ASP LEU ASN CYS ASN LEU PHE SER LYS GLU GLN SEQRES 3 A 75 ARG ALA TYR ILE THR THR LEU CYS PRO SER ILE ARG LYS SEQRES 4 A 75 MET GLU GLY HIS ASP GLY ILE GLU LYS VAL CYS GLY ASP SEQRES 5 A 75 PHE GLN ASP ILE GLU ARG ILE HIS GLN PHE LEU SER GLU SEQRES 6 A 75 GLN PHE LEU GLU SER GLU GLN LYS GLN GLN SEQRES 1 B 75 ALA VAL ASP SER CYS LEU GLN LYS ILE PHE LEU THR VAL SEQRES 2 B 75 THR ALA ASP LEU ASN CYS ASN LEU PHE SER LYS GLU GLN SEQRES 3 B 75 ARG ALA TYR ILE THR THR LEU CYS PRO SER ILE ARG LYS SEQRES 4 B 75 MET GLU GLY HIS ASP GLY ILE GLU LYS VAL CYS GLY ASP SEQRES 5 B 75 PHE GLN ASP ILE GLU ARG ILE HIS GLN PHE LEU SER GLU SEQRES 6 B 75 GLN PHE LEU GLU SER GLU GLN LYS GLN GLN SEQRES 1 C 75 ALA VAL ASP SER CYS LEU GLN LYS ILE PHE LEU THR VAL SEQRES 2 C 75 THR ALA ASP LEU ASN CYS ASN LEU PHE SER LYS GLU GLN SEQRES 3 C 75 ARG ALA TYR ILE THR THR LEU CYS PRO SER ILE ARG LYS SEQRES 4 C 75 MET GLU GLY HIS ASP GLY ILE GLU LYS VAL CYS GLY ASP SEQRES 5 C 75 PHE GLN ASP ILE GLU ARG ILE HIS GLN PHE LEU SER GLU SEQRES 6 C 75 GLN PHE LEU GLU SER GLU GLN LYS GLN GLN SEQRES 1 D 75 ALA VAL ASP SER CYS LEU GLN LYS ILE PHE LEU THR VAL SEQRES 2 D 75 THR ALA ASP LEU ASN CYS ASN LEU PHE SER LYS GLU GLN SEQRES 3 D 75 ARG ALA TYR ILE THR THR LEU CYS PRO SER ILE ARG LYS SEQRES 4 D 75 MET GLU GLY HIS ASP GLY ILE GLU LYS VAL CYS GLY ASP SEQRES 5 D 75 PHE GLN ASP ILE GLU ARG ILE HIS GLN PHE LEU SER GLU SEQRES 6 D 75 GLN PHE LEU GLU SER GLU GLN LYS GLN GLN HET SO4 A 301 5 HET SO4 B 301 5 HET SO4 C 301 5 HET SO4 D 301 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 4(O4 S 2-) HELIX 1 AA1 SER A 148 TYR A 154 1 7 HELIX 2 AA2 TYR A 154 CYS A 159 1 6 HELIX 3 AA3 ASP A 177 GLN A 191 1 15 HELIX 4 AA4 SER B 148 TYR B 154 1 7 HELIX 5 AA5 TYR B 154 CYS B 159 1 6 HELIX 6 AA6 ASP B 177 GLU B 190 1 14 HELIX 7 AA7 SER C 148 TYR C 154 1 7 HELIX 8 AA8 TYR C 154 CYS C 159 1 6 HELIX 9 AA9 ASP C 177 GLU C 190 1 14 HELIX 10 AB1 SER D 148 TYR D 154 1 7 HELIX 11 AB2 TYR D 154 CYS D 159 1 6 HELIX 12 AB3 ASP D 177 GLU D 190 1 14 SHEET 1 AA1 6 ARG A 163 GLY A 167 0 SHEET 2 AA1 6 GLY A 170 GLY A 176 -1 O GLU A 172 N MET A 165 SHEET 3 AA1 6 PHE A 135 LEU A 142 -1 N LEU A 142 O GLU A 172 SHEET 4 AA1 6 PHE D 135 LEU D 142 -1 O ASP D 141 N THR A 137 SHEET 5 AA1 6 GLY D 170 GLY D 176 -1 O GLU D 172 N LEU D 142 SHEET 6 AA1 6 ARG D 163 GLY D 167 -1 N MET D 165 O GLU D 172 SHEET 1 AA2 6 ARG B 163 GLY B 167 0 SHEET 2 AA2 6 GLY B 170 GLY B 176 -1 O GLU B 172 N MET B 165 SHEET 3 AA2 6 PHE B 135 LEU B 142 -1 N ALA B 140 O VAL B 174 SHEET 4 AA2 6 PHE C 135 LEU C 142 -1 O THR C 139 N THR B 139 SHEET 5 AA2 6 GLY C 170 GLY C 176 -1 O GLU C 172 N LEU C 142 SHEET 6 AA2 6 ARG C 163 GLY C 167 -1 N MET C 165 O GLU C 172 CRYST1 140.893 140.893 41.037 90.00 90.00 90.00 P 41 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024368 0.00000