HEADER ISOMERASE 27-NOV-23 8R7S TITLE CRYSTAL STRUCTURE OF CYCLOPHILIN TGCYP23 FROM TOXOPLASMA GONDII IN TITLE 2 COMPLEX WITH NIM811 (N-METHYL-4-ISOLEUCINE CYCLOSPORIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPIASE; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THERE ARE TWO ADDITIONAL RESIDUES IN N-TERM, THAT COMPND 8 REMAIN AFTER THE HIS TAG CLEAVAGE AND ARE NOT OBSERVED IN DENSITY. COMPND 9 GLYCINE (-1) HISTIDINE (0); COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CYCLOSPORIN A, 8 MUTATION; COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: TGRH88_026260; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS CYCLOPHILIN COMPLEX, PEPTIDYLPROLYL ISOMERASE ACTIVITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.JIMENEZ-FARACO,J.A.HERMOSO REVDAT 1 30-OCT-24 8R7S 0 JRNL AUTH F.FAVRETTO,E.JIMENEZ-FARACO,G.CATUCCI,A.DI MATTEO, JRNL AUTH 2 C.TRAVAGLINI-ALLOCATELLI,S.J.SADEGHI,P.DOMINICI,J.A.HERMOSO, JRNL AUTH 3 A.ASTEGNO JRNL TITL EVALUATING THE POTENTIAL OF NON-IMMUNOSUPPRESSIVE JRNL TITL 2 CYCLOSPORIN ANALOGS FOR TARGETING TOXOPLASMA GONDII JRNL TITL 3 CYCLOPHILIN: INSIGHTS FROM STRUCTURAL STUDIES. JRNL REF PROTEIN SCI. V. 33 E5157 2024 JRNL REFN ESSN 1469-896X JRNL PMID 39312281 JRNL DOI 10.1002/PRO.5157 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.FAVRETTO,E.JIMENEZ-FARACO,C.CONTER,P.DOMINICI,J.A.HERMOSO, REMARK 1 AUTH 2 A.ASTEGNO REMARK 1 TITL STRUCTURAL BASIS FOR CYCLOSPORIN ISOFORM-SPECIFIC INHIBITION REMARK 1 TITL 2 OF CYCLOPHILINS FROM TOXOPLASMA GONDII REMARK 1 REF ACS INFECT DIS. V. 9 365 2023 REMARK 1 REFN ESSN 2373-8227 REMARK 1 PMID 36653744 REMARK 1 DOI 10.1021/ACSINFECDIS.2C00566 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 132383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 6513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6600 - 3.6300 1.00 4287 229 0.1231 0.1438 REMARK 3 2 3.6300 - 2.8800 1.00 4221 227 0.1306 0.1611 REMARK 3 3 2.8800 - 2.5100 1.00 4252 215 0.1461 0.1748 REMARK 3 4 2.5100 - 2.2800 0.99 4213 204 0.1505 0.1655 REMARK 3 5 2.2800 - 2.1200 1.00 4240 205 0.1389 0.1545 REMARK 3 6 2.1200 - 2.0000 1.00 4216 204 0.1384 0.1639 REMARK 3 7 2.0000 - 1.9000 1.00 4229 220 0.1426 0.1540 REMARK 3 8 1.9000 - 1.8100 1.00 4205 221 0.1440 0.1604 REMARK 3 9 1.8100 - 1.7400 1.00 4258 190 0.1459 0.1807 REMARK 3 10 1.7400 - 1.6800 1.00 4241 215 0.1464 0.1512 REMARK 3 11 1.6800 - 1.6300 1.00 4228 221 0.1442 0.1505 REMARK 3 12 1.6300 - 1.5800 1.00 4162 210 0.1470 0.1702 REMARK 3 13 1.5800 - 1.5400 1.00 4217 245 0.1513 0.1702 REMARK 3 14 1.5400 - 1.5000 1.00 4216 211 0.1527 0.1765 REMARK 3 15 1.5000 - 1.4700 0.99 4179 214 0.1543 0.1763 REMARK 3 16 1.4700 - 1.4400 1.00 4200 224 0.1604 0.1925 REMARK 3 17 1.4400 - 1.4100 0.99 4153 232 0.1675 0.1754 REMARK 3 18 1.4100 - 1.3800 0.99 4241 221 0.1687 0.1930 REMARK 3 19 1.3800 - 1.3600 0.99 4168 234 0.1729 0.1766 REMARK 3 20 1.3600 - 1.3400 0.99 4212 227 0.1782 0.2155 REMARK 3 21 1.3400 - 1.3100 0.99 4116 202 0.1818 0.1979 REMARK 3 22 1.3100 - 1.2900 0.99 4249 208 0.1866 0.2059 REMARK 3 23 1.2900 - 1.2800 0.99 4119 226 0.1970 0.2024 REMARK 3 24 1.2800 - 1.2600 0.99 4223 238 0.1956 0.2003 REMARK 3 25 1.2600 - 1.2400 0.99 4119 217 0.1970 0.2302 REMARK 3 26 1.2400 - 1.2200 0.99 4164 204 0.2034 0.2244 REMARK 3 27 1.2200 - 1.2100 0.99 4169 220 0.2045 0.2237 REMARK 3 28 1.2100 - 1.1900 0.99 4140 217 0.2162 0.2029 REMARK 3 29 1.1900 - 1.1800 0.98 4146 208 0.2186 0.2303 REMARK 3 30 1.1800 - 1.1700 0.96 4087 204 0.2290 0.2253 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.102 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.612 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3396 REMARK 3 ANGLE : 1.671 4614 REMARK 3 CHIRALITY : 0.109 494 REMARK 3 PLANARITY : 0.013 607 REMARK 3 DIHEDRAL : 24.229 526 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 12:211 ) OR ( CHAIN D AND RESID REMARK 3 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.703 23.318 14.840 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.1482 REMARK 3 T33: 0.0512 T12: -0.0039 REMARK 3 T13: 0.0314 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.7007 L22: 1.6047 REMARK 3 L33: 0.5083 L12: -0.2734 REMARK 3 L13: 0.1245 L23: -0.0772 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0269 S13: 0.0285 REMARK 3 S21: -0.0041 S22: -0.0253 S23: 0.0102 REMARK 3 S31: -0.0092 S32: -0.0336 S33: 0.0233 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 12:211 ) OR ( CHAIN C AND RESID REMARK 3 1:11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.634 57.738 6.059 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.1378 REMARK 3 T33: 0.0632 T12: -0.0116 REMARK 3 T13: 0.0110 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.5767 L22: 1.9630 REMARK 3 L33: 0.7106 L12: -0.1727 REMARK 3 L13: 0.1308 L23: -0.0499 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: 0.0113 S13: -0.0437 REMARK 3 S21: -0.1576 S22: 0.0535 S23: 0.0917 REMARK 3 S31: 0.0021 S32: 0.0471 S33: -0.0429 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8R7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292134827. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979264 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.0.5 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 132383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 44.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 41.42 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID PH 3.5, AND 25% REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.09350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CYCLOSPORIN IS A CYCLIC UNDECAPEPTIDE. REMARK 400 HERE, CYCLOSPORIN A IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE CYCLOSPORIN A, 8 MUTATION IS CYCLIC PEPTIDE, A MEMBER OF REMARK 400 IMMUNOSUPPRESSANT CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: CYCLOSPORIN A, 8 MUTATION REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: CYCLOSPORIN IS A CYCLIC UNDECAPEPTIDE. CYCLIZATION REMARK 400 IS ACHIEVED BY LINKING THE N- AND THE C- TERMINI. REMARK 400 THE CYCLOSPORIN A MOLECULE WAS MODIFIED AT POSITION REMARK 400 8 TO BE N-METHYL-ISOLEUCINE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 ASN A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 ASN B 8 REMARK 465 SER B 9 REMARK 465 GLY B 10 REMARK 465 GLU B 11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MLE C 2 C MLE C 3 N 0.145 REMARK 500 SAR C 7 C IML C 8 N 0.145 REMARK 500 MLE C 10 C ALA C 11 N 0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 163 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 DAL C 1 N - CA - CB ANGL. DEV. = -8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 104 -77.11 -130.88 REMARK 500 CYS A 163 60.92 -156.54 REMARK 500 PHE B 104 -74.82 -131.24 REMARK 500 CYS B 163 61.38 -152.73 REMARK 500 CYS B 163 58.04 -142.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 567 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A 571 DISTANCE = 12.31 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 15.90 ANGSTROMS REMARK 525 HOH B 541 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 542 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH D 113 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH D 114 DISTANCE = 6.88 ANGSTROMS DBREF1 8R7S A 1 211 UNP A0A7J6KAD1_TOXGO DBREF2 8R7S A A0A7J6KAD1 1 211 DBREF1 8R7S B 1 211 UNP A0A7J6KAD1_TOXGO DBREF2 8R7S B A0A7J6KAD1 1 211 DBREF 8R7S C 1 11 PDB 8R7S 8R7S 1 11 DBREF 8R7S D 1 11 PDB 8R7S 8R7S 1 11 SEQADV 8R7S GLY A -1 UNP A0A7J6KAD EXPRESSION TAG SEQADV 8R7S HIS A 0 UNP A0A7J6KAD EXPRESSION TAG SEQADV 8R7S GLY B -1 UNP A0A7J6KAD EXPRESSION TAG SEQADV 8R7S HIS B 0 UNP A0A7J6KAD EXPRESSION TAG SEQRES 1 A 213 GLY HIS MET ALA PRO ALA PRO PRO ALA ASN SER GLY GLU SEQRES 2 A 213 SER SER LEU LEU SER GLU SER GLU LEU PRO ALA GLY ILE SEQRES 3 A 213 SER TYR ALA GLU ALA MET GLU GLY GLY SER ARG PRO LEU SEQRES 4 A 213 LEU HIS PRO ASP ASN PRO VAL VAL PHE PHE ASP ILE SER SEQRES 5 A 213 ILE GLY SER HIS GLU ALA GLY ARG ILE LYS ILE GLU LEU SEQRES 6 A 213 PHE LYS ASN LEU ALA PRO LYS SER ALA GLU ASN PHE ARG SEQRES 7 A 213 GLN PHE CYS THR GLY GLU PHE ARG GLN ASN GLN VAL PRO SEQRES 8 A 213 ILE GLY TYR LYS GLY ALA THR PHE HIS ARG ILE ILE LYS SEQRES 9 A 213 ASN PHE MET ILE GLN GLY GLY ASP PHE VAL LYS GLY ASP SEQRES 10 A 213 GLY THR GLY ARG LEU SER ILE TYR GLY SER SER PHE PRO SEQRES 11 A 213 ASP GLU ALA PHE VAL LEU PRO HIS PHE ARG SER GLY LEU SEQRES 12 A 213 LEU SER LEU ALA ASN SER GLY PRO ASP THR ASN GLY CYS SEQRES 13 A 213 GLN PHE PHE ILE THR CYS ALA LYS CYS ASP TRP LEU ASN SEQRES 14 A 213 ARG LYS HIS VAL VAL PHE GLY GLN VAL LEU GLY LYS GLU SEQRES 15 A 213 SER MET GLN VAL VAL ARG LYS ILE GLU HIS VAL THR VAL SEQRES 16 A 213 ASP GLY GLY ASN ARG PRO ARG ILE PRO VAL THR VAL THR SEQRES 17 A 213 GLN CYS GLY GLU LEU SEQRES 1 B 213 GLY HIS MET ALA PRO ALA PRO PRO ALA ASN SER GLY GLU SEQRES 2 B 213 SER SER LEU LEU SER GLU SER GLU LEU PRO ALA GLY ILE SEQRES 3 B 213 SER TYR ALA GLU ALA MET GLU GLY GLY SER ARG PRO LEU SEQRES 4 B 213 LEU HIS PRO ASP ASN PRO VAL VAL PHE PHE ASP ILE SER SEQRES 5 B 213 ILE GLY SER HIS GLU ALA GLY ARG ILE LYS ILE GLU LEU SEQRES 6 B 213 PHE LYS ASN LEU ALA PRO LYS SER ALA GLU ASN PHE ARG SEQRES 7 B 213 GLN PHE CYS THR GLY GLU PHE ARG GLN ASN GLN VAL PRO SEQRES 8 B 213 ILE GLY TYR LYS GLY ALA THR PHE HIS ARG ILE ILE LYS SEQRES 9 B 213 ASN PHE MET ILE GLN GLY GLY ASP PHE VAL LYS GLY ASP SEQRES 10 B 213 GLY THR GLY ARG LEU SER ILE TYR GLY SER SER PHE PRO SEQRES 11 B 213 ASP GLU ALA PHE VAL LEU PRO HIS PHE ARG SER GLY LEU SEQRES 12 B 213 LEU SER LEU ALA ASN SER GLY PRO ASP THR ASN GLY CYS SEQRES 13 B 213 GLN PHE PHE ILE THR CYS ALA LYS CYS ASP TRP LEU ASN SEQRES 14 B 213 ARG LYS HIS VAL VAL PHE GLY GLN VAL LEU GLY LYS GLU SEQRES 15 B 213 SER MET GLN VAL VAL ARG LYS ILE GLU HIS VAL THR VAL SEQRES 16 B 213 ASP GLY GLY ASN ARG PRO ARG ILE PRO VAL THR VAL THR SEQRES 17 B 213 GLN CYS GLY GLU LEU SEQRES 1 C 11 DAL MLE MLE MVA BMT ABA SAR IML VAL MLE ALA SEQRES 1 D 11 DAL MLE MLE MVA BMT ABA SAR IML VAL MLE ALA HET DAL C 1 5 HET MLE C 2 9 HET MLE C 3 9 HET MVA C 4 8 HET BMT C 5 13 HET ABA C 6 6 HET SAR C 7 5 HET IML C 8 9 HET MLE C 10 9 HET DAL D 1 5 HET MLE D 2 9 HET MLE D 3 9 HET MVA D 4 8 HET BMT D 5 13 HET ABA D 6 6 HET SAR D 7 5 HET IML D 8 9 HET MLE D 10 9 HETNAM DAL D-ALANINE HETNAM MLE N-METHYLLEUCINE HETNAM MVA N-METHYLVALINE HETNAM BMT 4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM SAR SARCOSINE HETNAM IML N-METHYL-ISOLEUCINE FORMUL 3 DAL 2(C3 H7 N O2) FORMUL 3 MLE 6(C7 H15 N O2) FORMUL 3 MVA 2(C6 H13 N O2) FORMUL 3 BMT 2(C10 H19 N O3) FORMUL 3 ABA 2(C4 H9 N O2) FORMUL 3 SAR 2(C3 H7 N O2) FORMUL 3 IML 2(C7 H15 N O2) FORMUL 5 HOH *535(H2 O) HELIX 1 AA1 SER A 25 GLU A 31 1 7 HELIX 2 AA2 ALA A 68 GLY A 81 1 14 HELIX 3 AA3 CYS A 163 ASN A 167 5 5 HELIX 4 AA4 GLY A 178 HIS A 190 1 13 HELIX 5 AA5 SER B 16 LEU B 20 5 5 HELIX 6 AA6 SER B 25 GLU B 31 1 7 HELIX 7 AA7 ALA B 68 GLY B 81 1 14 HELIX 8 AA8 CYS B 163 ASN B 167 5 5 HELIX 9 AA9 GLY B 178 HIS B 190 1 13 SHEET 1 AA1 8 PHE A 97 ILE A 101 0 SHEET 2 AA1 8 MET A 105 GLY A 108 -1 O GLN A 107 N ARG A 99 SHEET 3 AA1 8 PHE A 156 THR A 159 -1 O ILE A 158 N ILE A 106 SHEET 4 AA1 8 LEU A 141 LEU A 144 -1 N SER A 143 O PHE A 157 SHEET 5 AA1 8 VAL A 172 LEU A 177 -1 O GLY A 174 N LEU A 142 SHEET 6 AA1 8 HIS A 54 LEU A 63 -1 N GLU A 62 O GLN A 175 SHEET 7 AA1 8 VAL A 44 ILE A 51 -1 N ILE A 49 O ALA A 56 SHEET 8 AA1 8 VAL A 203 GLU A 210 -1 O GLN A 207 N ASP A 48 SHEET 1 AA2 2 ARG A 84 GLN A 85 0 SHEET 2 AA2 2 VAL A 88 PRO A 89 -1 O VAL A 88 N GLN A 85 SHEET 1 AA3 8 PHE B 97 ILE B 101 0 SHEET 2 AA3 8 MET B 105 GLY B 108 -1 O GLN B 107 N ARG B 99 SHEET 3 AA3 8 PHE B 156 THR B 159 -1 O ILE B 158 N ILE B 106 SHEET 4 AA3 8 LEU B 141 LEU B 144 -1 N LEU B 141 O THR B 159 SHEET 5 AA3 8 VAL B 172 LEU B 177 -1 O GLY B 174 N LEU B 142 SHEET 6 AA3 8 HIS B 54 LEU B 63 -1 N GLU B 62 O GLN B 175 SHEET 7 AA3 8 VAL B 44 ILE B 51 -1 N ILE B 49 O ALA B 56 SHEET 8 AA3 8 VAL B 203 GLU B 210 -1 O GLN B 207 N ASP B 48 SHEET 1 AA4 2 ARG B 84 GLN B 85 0 SHEET 2 AA4 2 VAL B 88 PRO B 89 -1 O VAL B 88 N GLN B 85 LINK C DAL C 1 N MLE C 2 1555 1555 1.47 LINK N DAL C 1 C ALA C 11 1555 1555 1.50 LINK C MLE C 2 N MLE C 3 1555 1555 1.48 LINK C MLE C 3 N MVA C 4 1555 1555 1.45 LINK C MVA C 4 N BMT C 5 1555 1555 1.46 LINK C BMT C 5 N ABA C 6 1555 1555 1.46 LINK C ABA C 6 N SAR C 7 1555 1555 1.46 LINK C SAR C 7 N IML C 8 1555 1555 1.48 LINK C IML C 8 N VAL C 9 1555 1555 1.46 LINK C VAL C 9 N MLE C 10 1555 1555 1.46 LINK C MLE C 10 N ALA C 11 1555 1555 1.49 LINK C DAL D 1 N MLE D 2 1555 1555 1.43 LINK N DAL D 1 C ALA D 11 1555 1555 1.45 LINK C MLE D 2 N MLE D 3 1555 1555 1.43 LINK C MLE D 3 N MVA D 4 1555 1555 1.43 LINK C MVA D 4 N BMT D 5 1555 1555 1.47 LINK C BMT D 5 N ABA D 6 1555 1555 1.45 LINK C ABA D 6 N SAR D 7 1555 1555 1.44 LINK C SAR D 7 N IML D 8 1555 1555 1.45 LINK C IML D 8 N VAL D 9 1555 1555 1.45 LINK C VAL D 9 N MLE D 10 1555 1555 1.46 LINK C MLE D 10 N ALA D 11 1555 1555 1.47 CRYST1 38.095 118.187 45.885 90.00 103.27 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026250 0.000000 0.006191 0.00000 SCALE2 0.000000 0.008461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022391 0.00000 CONECT 3144 3145 3226 CONECT 3145 3144 3146 3147 CONECT 3146 3145 CONECT 3147 3145 3148 3149 CONECT 3148 3147 CONECT 3149 3147 3150 3151 CONECT 3150 3149 CONECT 3151 3149 3152 3156 CONECT 3152 3151 3153 CONECT 3153 3152 3154 3155 CONECT 3154 3153 CONECT 3155 3153 CONECT 3156 3151 3157 3158 CONECT 3157 3156 CONECT 3158 3156 3159 3160 CONECT 3159 3158 CONECT 3160 3158 3161 3165 CONECT 3161 3160 3162 CONECT 3162 3161 3163 3164 CONECT 3163 3162 CONECT 3164 3162 CONECT 3165 3160 3166 3167 CONECT 3166 3165 CONECT 3167 3165 3168 3169 CONECT 3168 3167 CONECT 3169 3167 3170 3173 CONECT 3170 3169 3171 3172 CONECT 3171 3170 CONECT 3172 3170 CONECT 3173 3169 3174 3175 CONECT 3174 3173 CONECT 3175 3173 3176 3177 CONECT 3176 3175 CONECT 3177 3175 3178 3180 CONECT 3178 3177 3179 3188 CONECT 3179 3178 CONECT 3180 3177 3181 3182 CONECT 3181 3180 CONECT 3182 3180 3183 3184 CONECT 3183 3182 CONECT 3184 3182 3185 CONECT 3185 3184 3186 CONECT 3186 3185 3187 CONECT 3187 3186 CONECT 3188 3178 3189 CONECT 3189 3188 3190 3192 CONECT 3190 3189 3191 3194 CONECT 3191 3190 CONECT 3192 3189 3193 CONECT 3193 3192 CONECT 3194 3190 3195 3198 CONECT 3195 3194 3196 CONECT 3196 3195 3197 3199 CONECT 3197 3196 CONECT 3198 3194 CONECT 3199 3196 3200 3204 CONECT 3200 3199 3201 3203 CONECT 3201 3200 3202 3208 CONECT 3202 3201 CONECT 3203 3200 3205 3206 CONECT 3204 3199 CONECT 3205 3203 CONECT 3206 3203 3207 CONECT 3207 3206 CONECT 3208 3201 CONECT 3210 3215 CONECT 3215 3210 3216 3217 CONECT 3216 3215 CONECT 3217 3215 3218 3222 CONECT 3218 3217 3219 CONECT 3219 3218 3220 3221 CONECT 3220 3219 CONECT 3221 3219 CONECT 3222 3217 3223 3224 CONECT 3223 3222 CONECT 3224 3222 CONECT 3226 3144 CONECT 3230 3231 3312 CONECT 3231 3230 3232 3233 CONECT 3232 3231 CONECT 3233 3231 3234 3235 CONECT 3234 3233 CONECT 3235 3233 3236 3237 CONECT 3236 3235 CONECT 3237 3235 3238 3242 CONECT 3238 3237 3239 CONECT 3239 3238 3240 3241 CONECT 3240 3239 CONECT 3241 3239 CONECT 3242 3237 3243 3244 CONECT 3243 3242 CONECT 3244 3242 3245 3246 CONECT 3245 3244 CONECT 3246 3244 3247 3251 CONECT 3247 3246 3248 CONECT 3248 3247 3249 3250 CONECT 3249 3248 CONECT 3250 3248 CONECT 3251 3246 3252 3253 CONECT 3252 3251 CONECT 3253 3251 3254 3255 CONECT 3254 3253 CONECT 3255 3253 3256 3259 CONECT 3256 3255 3257 3258 CONECT 3257 3256 CONECT 3258 3256 CONECT 3259 3255 3260 3261 CONECT 3260 3259 CONECT 3261 3259 3262 3263 CONECT 3262 3261 CONECT 3263 3261 3264 3266 CONECT 3264 3263 3265 3274 CONECT 3265 3264 CONECT 3266 3263 3267 3268 CONECT 3267 3266 CONECT 3268 3266 3269 3270 CONECT 3269 3268 CONECT 3270 3268 3271 CONECT 3271 3270 3272 CONECT 3272 3271 3273 CONECT 3273 3272 CONECT 3274 3264 3275 CONECT 3275 3274 3276 3278 CONECT 3276 3275 3277 3280 CONECT 3277 3276 CONECT 3278 3275 3279 CONECT 3279 3278 CONECT 3280 3276 3281 3284 CONECT 3281 3280 3282 CONECT 3282 3281 3283 3285 CONECT 3283 3282 CONECT 3284 3280 CONECT 3285 3282 3286 3290 CONECT 3286 3285 3287 3289 CONECT 3287 3286 3288 3294 CONECT 3288 3287 CONECT 3289 3286 3291 3292 CONECT 3290 3285 CONECT 3291 3289 CONECT 3292 3289 3293 CONECT 3293 3292 CONECT 3294 3287 CONECT 3296 3301 CONECT 3301 3296 3302 3303 CONECT 3302 3301 CONECT 3303 3301 3304 3308 CONECT 3304 3303 3305 CONECT 3305 3304 3306 3307 CONECT 3306 3305 CONECT 3307 3305 CONECT 3308 3303 3309 3310 CONECT 3309 3308 CONECT 3310 3308 CONECT 3312 3230 MASTER 402 0 18 9 20 0 0 6 3797 4 154 36 END