HEADER IMMUNE SYSTEM 01-DEC-23 8RAL
TITLE CL3E PEPTIDE BOUND TO THE I-AB MURINE MHC CLASS II RECEPTOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 OTHER_DETAILS: V76C MUTATION TO CREATE CYS TRAP WITH PEPTIDE;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A BETA CHAIN;
COMPND 8 CHAIN: B;
COMPND 9 ENGINEERED: YES;
COMPND 10 OTHER_DETAILS: N-TERMINAL CL3E PEPTIDE (CHAIN C IDENTIFIER) FUSED
COMPND 11 THROUGH G-S LINKER;
COMPND 12 MOL_ID: 3;
COMPND 13 MOLECULE: CL3E PEPTIDE;
COMPND 14 CHAIN: C;
COMPND 15 ENGINEERED: YES;
COMPND 16 OTHER_DETAILS: C-TERMINAL CYS FOR CYS TRAP LINKAGE WITH I-AB ALPHA
COMPND 17 CHAIN
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: H2-AA;
SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029;
SOURCE 8 MOL_ID: 2;
SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 11 ORGANISM_TAXID: 10090;
SOURCE 12 GENE: H2-AB1, H2-IABETA;
SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS;
SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029;
SOURCE 15 MOL_ID: 3;
SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 17 ORGANISM_TAXID: 32630;
SOURCE 18 EXPRESSION_SYSTEM: CRICETULUS GRISEUS;
SOURCE 19 EXPRESSION_SYSTEM_TAXID: 10029
KEYWDS MHC CLASS II, RECEPTOR, DIABETES, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR E.ERAUSQUIN,A.URDICIAIN,P.SERRA,P.SANTAMARIA,J.LOPEZ-SAGASETA
REVDAT 2 27-NOV-24 8RAL 1 COMPND REMARK HET HETNAM
REVDAT 2 2 1 HETSYN FORMUL HELIX SHEET
REVDAT 2 3 1 SSBOND LINK CRYST1 ATOM
REVDAT 1 06-NOV-24 8RAL 0
JRNL AUTH J.LOPEZ-SAGASETA,E.ERAUSQUIN,A.URDICIAIN,P.SERRA,
JRNL AUTH 2 P.SANTAMARIA
JRNL TITL CL3E PEPTIDE BOUND TO THE I-AB MURINE MHC CLASS II RECEPTOR
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0425
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.85
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7
REMARK 3 NUMBER OF REFLECTIONS : 30056
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : NULL
REMARK 3 R VALUE (WORKING SET) : 0.217
REMARK 3 FREE R VALUE : 0.263
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.974
REMARK 3 FREE R VALUE TEST SET COUNT : 1495
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2100
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77
REMARK 3 BIN R VALUE (WORKING SET) : 0.3710
REMARK 3 BIN FREE R VALUE SET COUNT : 107
REMARK 3 BIN FREE R VALUE : 0.3420
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2816
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 69
REMARK 3 SOLVENT ATOMS : 128
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 40.37
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.74
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 6.84400
REMARK 3 B22 (A**2) : -6.06300
REMARK 3 B33 (A**2) : -0.78100
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.198
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.195
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.318
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2969 ; 0.007 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 2545 ; 0.001 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4051 ; 1.688 ; 1.818
REMARK 3 BOND ANGLES OTHERS (DEGREES): 5833 ; 0.588 ; 1.734
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 359 ; 7.970 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 6.054 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;13.107 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 456 ; 0.080 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3475 ; 0.007 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 695 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 581 ; 0.209 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 68 ; 0.175 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1435 ; 0.187 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.211 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1459 ; 4.307 ; 5.077
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1459 ; 4.304 ; 5.077
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 5.897 ; 9.089
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1810 ; 5.896 ; 9.089
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 5.195 ; 5.344
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1511 ; 5.193 ; 5.345
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2242 ; 7.083 ; 9.678
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2243 ; 7.082 ; 9.678
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK BULK SOLVENT
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK 3 RIDING POSITIONS
REMARK 4
REMARK 4 8RAL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-23.
REMARK 100 THE DEPOSITION ID IS D_1292134896.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-APR-22
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALBA
REMARK 200 BEAMLINE : XALOC
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979181
REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30076
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 46.850
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 200 DATA REDUNDANCY : 4.300
REMARK 200 R MERGE (I) : 0.08700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.93600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.45
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE HEXAHYDRATE,
REMARK 280 0.1 M SODIUM ACETATE PH 5.0, 20% W/V PEG 6000, PH 6.5, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 X,-Y,-Z
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 -X,-Y+1/2,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.01600
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.51850
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.01600
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.51850
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8040 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU A -1
REMARK 465 ASP A 0
REMARK 465 ASP A 1
REMARK 465 ILE A 2
REMARK 465 PRO A 182
REMARK 465 GLU A 183
REMARK 465 ILE A 184
REMARK 465 PRO A 185
REMARK 465 ALA A 186
REMARK 465 PRO A 187
REMARK 465 MET A 188
REMARK 465 SER A 189
REMARK 465 GLU A 190
REMARK 465 LEU A 191
REMARK 465 THR A 192
REMARK 465 GLU A 193
REMARK 465 GLY B -24
REMARK 465 LEU B -23
REMARK 465 TYR B -22
REMARK 465 LEU B -21
REMARK 465 GLU B -20
REMARK 465 ALA B -19
REMARK 465 VAL B -18
REMARK 465 PRO B -17
REMARK 465 LEU B -16
REMARK 465 GLN B -15
REMARK 465 VAL B -14
REMARK 465 GLY B -13
REMARK 465 CYS B -12
REMARK 465 GLY B -11
REMARK 465 GLY B -10
REMARK 465 GLY B -9
REMARK 465 SER B -8
REMARK 465 GLY B -7
REMARK 465 GLY B -6
REMARK 465 SER B -5
REMARK 465 GLY B -4
REMARK 465 GLY B -3
REMARK 465 GLY B -2
REMARK 465 GLY B -1
REMARK 465 SER B 0
REMARK 465 GLY B 1
REMARK 465 ASP B 2
REMARK 465 SER B 3
REMARK 465 ARG B 106
REMARK 465 THR B 107
REMARK 465 GLU B 108
REMARK 465 ALA B 109
REMARK 465 LEU B 110
REMARK 465 ASN B 111
REMARK 465 HIS B 112
REMARK 465 HIS B 113
REMARK 465 PRO B 166
REMARK 465 ARG B 167
REMARK 465 ARG B 168
REMARK 465 GLY B 169
REMARK 465 ARG B 190
REMARK 465 ALA B 191
REMARK 465 GLN B 192
REMARK 465 SER B 193
REMARK 465 GLU B 194
REMARK 465 SER B 195
REMARK 465 ALA B 196
REMARK 465 TRP B 197
REMARK 465 SER B 198
REMARK 465 LYS B 199
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 3 CG CD OE1 OE2
REMARK 470 ILE A 21 CD1
REMARK 470 LYS A 40 CD CE NZ
REMARK 470 LYS A 41 CG CD CE NZ
REMARK 470 GLN A 63 CG CD OE1 NE2
REMARK 470 SER A 81 OG
REMARK 470 THR A 85 CG2
REMARK 470 LEU A 101 CD1 CD2
REMARK 470 LYS A 128 CG CD CE NZ
REMARK 470 SER A 129 OG
REMARK 470 VAL A 130 CG1 CG2
REMARK 470 ASP A 132 CB CG OD1 OD2
REMARK 470 TYR A 135 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2
REMARK 470 ASP A 159 CG OD1 OD2
REMARK 470 ASP A 160 OD1 OD2
REMARK 470 ILE A 162 CG1 CG2 CD1
REMARK 470 LYS A 166 CG CD CE NZ
REMARK 470 VAL A 167 CG1 CG2
REMARK 470 GLU A 168 CD OE1 OE2
REMARK 470 LEU A 177 CG CD1 CD2
REMARK 470 HIS A 179 CG ND1 CD2 CE1 NE2
REMARK 470 GLU A 181 CG CD OE1 OE2
REMARK 470 GLU B 4 CD OE1 OE2
REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2
REMARK 470 THR B 18 CG2
REMARK 470 ASN B 19 CG OD1 ND2
REMARK 470 GLN B 22 CG CD OE1 NE2
REMARK 470 ARG B 23 CD NE CZ NH1 NH2
REMARK 470 LEU B 53 CD1 CD2
REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 59 CG CD OE1 OE2
REMARK 470 GLU B 69 CG CD OE1 OE2
REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2
REMARK 470 VAL B 100 CG1 CG2
REMARK 470 LEU B 104 CB CG CD1 CD2
REMARK 470 LYS B 127 CG CD CE NZ
REMARK 470 LYS B 129 CE NZ
REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2
REMARK 470 GLN B 137 CG CD OE1 NE2
REMARK 470 GLU B 139 CG CD OE1 OE2
REMARK 470 SER B 144 OG
REMARK 470 GLU B 163 CG CD OE1 OE2
REMARK 470 MET B 164 CG SD CE
REMARK 470 THR B 165 OG1 CG2
REMARK 470 GLU B 170 CG CD OE1 OE2
REMARK 470 VAL B 171 CG1 CG2
REMARK 470 LYS B 182 CG CD CE NZ
REMARK 470 ILE B 185 CD1
REMARK 470 VAL B 187 CG1
REMARK 470 GLU B 188 CG CD OE1 OE2
REMARK 480
REMARK 480 ZERO OCCUPANCY ATOM
REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 480 M RES C SSEQI ATOMS
REMARK 480 GLU B 170 CB
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 NH1 ARG A 125 OH TYR A 163 2.09
REMARK 500 OH TYR A 15 OD1 ASP A 20 2.12
REMARK 500 O2 MAN D 4 O5 MAN D 5 2.13
REMARK 500 OE2 GLU A 42 O HOH A 301 2.15
REMARK 500 O HOH A 306 O HOH A 359 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 VHF B 84 C GLY B 85 N 0.140
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 VHF B 84 O - C - N ANGL. DEV. = -17.4 DEGREES
REMARK 500 GLU B 170 CB - CA - C ANGL. DEV. = 17.8 DEGREES
REMARK 500 GLU B 170 N - CA - CB ANGL. DEV. = -30.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 TYR A 10 66.20 -114.33
REMARK 500 SER A 127 4.89 82.41
REMARK 500 ARG B 34 -2.54 76.16
REMARK 500 VAL B 78 -74.80 -109.64
REMARK 500 THR B 90 -93.54 -115.01
REMARK 500 ASN B 135 60.33 38.47
REMARK 500 MET B 164 -93.48 -174.46
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG B 80 0.08 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY
REMARK 500
REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY
REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER
REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 500 I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI ANGLE
REMARK 500 VHF B 84 24.37
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8RAL A -1 193 UNP P14434 HA2B_MOUSE 24 218
DBREF 8RAL B 1 199 UNP P14483 HB2A_MOUSE 28 226
DBREF 8RAL C -1 11 PDB 8RAL 8RAL -1 11
SEQADV 8RAL CYS A 74 UNP P14434 VAL 99 ENGINEERED MUTATION
SEQADV 8RAL GLY B -24 UNP P14483 EXPRESSION TAG
SEQADV 8RAL LEU B -23 UNP P14483 EXPRESSION TAG
SEQADV 8RAL TYR B -22 UNP P14483 EXPRESSION TAG
SEQADV 8RAL LEU B -21 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLU B -20 UNP P14483 EXPRESSION TAG
SEQADV 8RAL ALA B -19 UNP P14483 EXPRESSION TAG
SEQADV 8RAL VAL B -18 UNP P14483 EXPRESSION TAG
SEQADV 8RAL PRO B -17 UNP P14483 EXPRESSION TAG
SEQADV 8RAL LEU B -16 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLN B -15 UNP P14483 EXPRESSION TAG
SEQADV 8RAL VAL B -14 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -13 UNP P14483 EXPRESSION TAG
SEQADV 8RAL CYS B -12 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -11 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -10 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -9 UNP P14483 EXPRESSION TAG
SEQADV 8RAL SER B -8 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -7 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -6 UNP P14483 EXPRESSION TAG
SEQADV 8RAL SER B -5 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -4 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -3 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -2 UNP P14483 EXPRESSION TAG
SEQADV 8RAL GLY B -1 UNP P14483 EXPRESSION TAG
SEQADV 8RAL SER B 0 UNP P14483 EXPRESSION TAG
SEQRES 1 A 195 GLU ASP ASP ILE GLU ALA ASP HIS VAL GLY THR TYR GLY
SEQRES 2 A 195 ILE SER VAL TYR GLN SER PRO GLY ASP ILE GLY GLN TYR
SEQRES 3 A 195 THR PHE GLU PHE ASP GLY ASP GLU LEU PHE TYR VAL ASP
SEQRES 4 A 195 LEU ASP LYS LYS GLU THR VAL TRP MET LEU PRO GLU PHE
SEQRES 5 A 195 GLY GLN LEU ALA SER PHE ASP PRO GLN GLY GLY LEU GLN
SEQRES 6 A 195 ASN ILE ALA VAL VAL LYS HIS ASN LEU GLY CYS LEU THR
SEQRES 7 A 195 LYS ARG SER ASN SER THR PRO ALA THR ASN GLU ALA PRO
SEQRES 8 A 195 GLN ALA THR VAL PHE PRO LYS SER PRO VAL LEU LEU GLY
SEQRES 9 A 195 GLN PRO ASN THR LEU ILE CYS PHE VAL ASP ASN ILE PHE
SEQRES 10 A 195 PRO PRO VAL ILE ASN ILE THR TRP LEU ARG ASN SER LYS
SEQRES 11 A 195 SER VAL ALA ASP GLY VAL TYR GLU THR SER PHE PHE VAL
SEQRES 12 A 195 ASN ARG ASP TYR SER PHE HIS LYS LEU SER TYR LEU THR
SEQRES 13 A 195 PHE ILE PRO SER ASP ASP ASP ILE TYR ASP CYS LYS VAL
SEQRES 14 A 195 GLU HIS TRP GLY LEU GLU GLU PRO VAL LEU LYS HIS TRP
SEQRES 15 A 195 GLU PRO GLU ILE PRO ALA PRO MET SER GLU LEU THR GLU
SEQRES 1 B 224 GLY LEU TYR LEU GLU ALA VAL PRO LEU GLN VAL GLY CYS
SEQRES 2 B 224 GLY GLY GLY SER GLY GLY SER GLY GLY GLY GLY SER GLY
SEQRES 3 B 224 ASP SER GLU ARG HIS PHE VAL TYR GLN PHE MET GLY GLU
SEQRES 4 B 224 CYS TYR PHE THR ASN GLY THR GLN ARG ILE ARG TYR VAL
SEQRES 5 B 224 THR ARG TYR ILE TYR ASN ARG GLU GLU TYR VAL ARG TYR
SEQRES 6 B 224 ASP SER ASP VAL GLY GLU HIS ARG ALA VAL THR GLU LEU
SEQRES 7 B 224 GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN PRO GLU
SEQRES 8 B 224 ILE LEU GLU ARG THR ARG ALA GLU LEU ASP THR VAL CYS
SEQRES 9 B 224 ARG HIS ASN TYR VHF GLY PRO GLU THR HIS THR SER LEU
SEQRES 10 B 224 ARG ARG LEU GLU GLN PRO ASN VAL VAL ILE SER LEU SER
SEQRES 11 B 224 ARG THR GLU ALA LEU ASN HIS HIS ASN THR LEU VAL CYS
SEQRES 12 B 224 SER VAL THR ASP PHE TYR PRO ALA LYS ILE LYS VAL ARG
SEQRES 13 B 224 TRP PHE ARG ASN GLY GLN GLU GLU THR VAL GLY VAL SER
SEQRES 14 B 224 SER THR GLN LEU ILE ARG ASN GLY ASP TRP THR PHE GLN
SEQRES 15 B 224 VAL LEU VAL MET LEU GLU MET THR PRO ARG ARG GLY GLU
SEQRES 16 B 224 VAL TYR THR CYS HIS VAL GLU HIS PRO SER LEU LYS SER
SEQRES 17 B 224 PRO ILE THR VAL GLU TRP ARG ALA GLN SER GLU SER ALA
SEQRES 18 B 224 TRP SER LYS
SEQRES 1 C 13 GLY LEU TYR LEU GLU ALA VAL PRO LEU GLN VAL GLY CYS
MODRES 8RAL VHF B 84 GLU MODIFIED RESIDUE
HET VHF B 84 13
HET NAG D 1 14
HET NAG D 2 14
HET MAN D 3 11
HET MAN D 4 11
HET MAN D 5 11
HET EDO A 201 4
HET EDO B 201 4
HETNAM VHF (2~{S})-2-AZANYL-5-OXIDANYLIDENE-5-PHOSPHONOOXY-
HETNAM 2 VHF PENTANOIC ACID
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM MAN ALPHA-D-MANNOPYRANOSE
HETNAM EDO 1,2-ETHANEDIOL
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 VHF C5 H10 N O7 P
FORMUL 4 NAG 2(C8 H15 N O6)
FORMUL 4 MAN 3(C6 H12 O6)
FORMUL 5 EDO 2(C2 H6 O2)
FORMUL 7 HOH *128(H2 O)
HELIX 1 AA1 LEU A 47 LEU A 53 5 7
HELIX 2 AA2 PRO A 58 SER A 79 1 22
HELIX 3 AA3 THR B 51 LEU B 53 5 3
HELIX 4 AA4 GLY B 54 GLN B 64 1 11
HELIX 5 AA5 GLN B 64 VAL B 78 1 15
HELIX 6 AA6 VAL B 78 GLY B 85 1 8
HELIX 7 AA7 GLY B 85 THR B 90 1 6
SHEET 1 AA1 8 GLU A 42 TRP A 45 0
SHEET 2 AA1 8 ASP A 31 ASP A 37 -1 N ASP A 37 O GLU A 42
SHEET 3 AA1 8 ILE A 21 PHE A 28 -1 N PHE A 28 O ASP A 31
SHEET 4 AA1 8 HIS A 6 SER A 17 -1 N THR A 9 O GLU A 27
SHEET 5 AA1 8 PHE B 7 THR B 18 -1 O PHE B 7 N SER A 17
SHEET 6 AA1 8 ARG B 23 TYR B 32 -1 O ILE B 31 N GLN B 10
SHEET 7 AA1 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32
SHEET 8 AA1 8 HIS B 47 ALA B 49 -1 O ARG B 48 N ARG B 39
SHEET 1 AA2 4 GLN A 90 PRO A 95 0
SHEET 2 AA2 4 ASN A 105 ILE A 114 -1 O ASP A 112 N GLN A 90
SHEET 3 AA2 4 PHE A 147 PHE A 155 -1 O SER A 151 N CYS A 109
SHEET 4 AA2 4 VAL A 134 GLU A 136 -1 N TYR A 135 O TYR A 152
SHEET 1 AA3 4 GLN A 90 PRO A 95 0
SHEET 2 AA3 4 ASN A 105 ILE A 114 -1 O ASP A 112 N GLN A 90
SHEET 3 AA3 4 PHE A 147 PHE A 155 -1 O SER A 151 N CYS A 109
SHEET 4 AA3 4 PHE A 140 VAL A 141 -1 N PHE A 140 O HIS A 148
SHEET 1 AA4 4 LYS A 128 SER A 129 0
SHEET 2 AA4 4 ASN A 120 ARG A 125 -1 N ARG A 125 O LYS A 128
SHEET 3 AA4 4 TYR A 163 GLU A 168 -1 O ASP A 164 N LEU A 124
SHEET 4 AA4 4 VAL A 176 TRP A 180 -1 O LYS A 178 N CYS A 165
SHEET 1 AA5 4 ASN B 99 LEU B 104 0
SHEET 2 AA5 4 THR B 115 PHE B 123 -1 O THR B 121 N ASN B 99
SHEET 3 AA5 4 PHE B 156 GLU B 163 -1 O LEU B 162 N LEU B 116
SHEET 4 AA5 4 VAL B 143 SER B 145 -1 N SER B 144 O MET B 161
SHEET 1 AA6 4 ASN B 99 LEU B 104 0
SHEET 2 AA6 4 THR B 115 PHE B 123 -1 O THR B 121 N ASN B 99
SHEET 3 AA6 4 PHE B 156 GLU B 163 -1 O LEU B 162 N LEU B 116
SHEET 4 AA6 4 ILE B 149 ARG B 150 -1 N ILE B 149 O GLN B 157
SHEET 1 AA7 4 GLN B 137 GLU B 139 0
SHEET 2 AA7 4 LYS B 129 ARG B 134 -1 N ARG B 134 O GLN B 137
SHEET 3 AA7 4 TYR B 172 GLU B 177 -1 O GLU B 177 N LYS B 129
SHEET 4 AA7 4 ILE B 185 TRP B 189 -1 O ILE B 185 N VAL B 176
SSBOND 1 CYS A 74 CYS C 11 1555 1555 2.07
SSBOND 2 CYS A 109 CYS A 165 1555 1555 2.01
SSBOND 3 CYS B 15 CYS B 79 1555 1555 2.03
SSBOND 4 CYS B 118 CYS B 174 1555 1555 1.99
LINK ND2 ASN A 120 C1 NAG D 1 1555 1555 1.47
LINK C TYR B 83 N VHF B 84 1555 1555 1.33
LINK C VHF B 84 N GLY B 85 1555 1555 1.48
LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.40
LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.41
LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.42
LINK O2 MAN D 4 C1 MAN D 5 1555 1555 1.39
CISPEP 1 SER A 17 PRO A 18 0 -8.53
CISPEP 2 PHE A 115 PRO A 116 0 1.19
CISPEP 3 TYR B 124 PRO B 125 0 -3.14
CRYST1 50.057 76.032 133.037 90.00 90.00 90.00 P 2 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.019977 0.000000 0.000000 0.00000
SCALE2 0.000000 0.013152 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007517 0.00000