HEADER TRANSFERASE 04-DEC-23 8RBE TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MMAA1 IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYCOLIC ACID METHYLTRANSFERASE MMAA1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE,ADOMET-MT, COMPND 5 SAM-MT; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CMAD, MMA1, MMAA1, MMAS-1, BQ2027_MB0664C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS METHYLTRANSFERASE, ENZYME, FATTY ACID, BACTERIUM, PATHOGEN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.KOBAKHIDZE,L.WACHELDER,B.CHAUDHARY,P.A.MAZUMDAR,C.MADHURANTAKAM, AUTHOR 2 G.DONG REVDAT 3 04-JUN-25 8RBE 1 AUTHOR JRNL REVDAT 2 07-MAY-25 8RBE 1 AUTHOR JRNL REVDAT 1 11-DEC-24 8RBE 0 JRNL AUTH B.CHAUDHARY,G.KOBAKHIDZE,L.WACHELDER,P.A.MAZUMDAR,G.DONG, JRNL AUTH 2 C.MADHURANTAKAM JRNL TITL CRYSTAL STRUCTURES OF THE MYCOLIC ACID METHYL TRANSFERASE 1 JRNL TITL 2 (MMAA1) FROM MYCOBACTERIUM TUBERCULOSIS IN THE APO-FORM AND JRNL TITL 3 IN COMPLEX WITH DIFFERENT COFACTORS REVEAL UNIQUE FEATURES JRNL TITL 4 FOR SUBSTRATE BINDING. JRNL REF J.BIOMOL.STRUCT.DYN. 1 2025 JRNL REFN ESSN 1538-0254 JRNL PMID 40411373 JRNL DOI 10.1080/07391102.2025.2483952 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.240 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7900 - 4.5600 1.00 3321 146 0.1597 0.1662 REMARK 3 2 4.5600 - 3.6200 1.00 3272 139 0.1357 0.1320 REMARK 3 3 3.6200 - 3.1700 1.00 3242 140 0.1509 0.1846 REMARK 3 4 3.1700 - 2.8800 1.00 3256 146 0.1750 0.2054 REMARK 3 5 2.8800 - 2.6700 1.00 3225 138 0.1785 0.2116 REMARK 3 6 2.6700 - 2.5200 1.00 3251 150 0.1751 0.2245 REMARK 3 7 2.5200 - 2.3900 1.00 3235 142 0.1840 0.2396 REMARK 3 8 2.3900 - 2.2900 1.00 3244 141 0.1880 0.2407 REMARK 3 9 2.2900 - 2.2000 1.00 3180 143 0.1965 0.2598 REMARK 3 10 2.2000 - 2.1200 1.00 3274 145 0.2029 0.2558 REMARK 3 11 2.1200 - 2.0600 1.00 3224 143 0.2134 0.2839 REMARK 3 12 2.0600 - 2.0000 1.00 3199 143 0.2350 0.2978 REMARK 3 13 2.0000 - 1.9400 1.00 3227 147 0.2714 0.3119 REMARK 3 14 1.9400 - 1.9000 0.99 3165 142 0.2688 0.3024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.229 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.999 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4540 REMARK 3 ANGLE : 0.617 6142 REMARK 3 CHIRALITY : 0.041 656 REMARK 3 PLANARITY : 0.005 806 REMARK 3 DIHEDRAL : 5.740 614 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2178 3.9357 40.3954 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.1933 REMARK 3 T33: 0.2034 T12: 0.0218 REMARK 3 T13: -0.0105 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.7080 L22: 0.9562 REMARK 3 L33: 1.0902 L12: 0.0881 REMARK 3 L13: -0.2098 L23: 0.5209 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: -0.0303 S13: 0.0363 REMARK 3 S21: 0.0609 S22: -0.0057 S23: 0.0228 REMARK 3 S31: 0.0268 S32: 0.0021 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0809 -5.3739 20.1457 REMARK 3 T TENSOR REMARK 3 T11: 0.2762 T22: 0.3255 REMARK 3 T33: 0.3936 T12: 0.0739 REMARK 3 T13: 0.0714 T23: 0.0771 REMARK 3 L TENSOR REMARK 3 L11: 1.3779 L22: 0.5202 REMARK 3 L33: 1.3379 L12: 0.8445 REMARK 3 L13: 1.3464 L23: 0.8172 REMARK 3 S TENSOR REMARK 3 S11: -0.1598 S12: 0.2378 S13: 0.3190 REMARK 3 S21: 0.1587 S22: 0.3220 S23: 0.5532 REMARK 3 S31: -0.2321 S32: 0.1318 S33: 0.1003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4275 -6.2506 32.1274 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.2242 REMARK 3 T33: 0.2131 T12: 0.0112 REMARK 3 T13: -0.0018 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.4332 L22: 0.8015 REMARK 3 L33: 0.4912 L12: -0.0314 REMARK 3 L13: 0.1233 L23: 0.1508 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: 0.0860 S13: -0.0367 REMARK 3 S21: -0.1186 S22: 0.0886 S23: -0.0322 REMARK 3 S31: 0.0145 S32: 0.0299 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6033 -36.8300 21.7801 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: 0.3498 REMARK 3 T33: 0.3093 T12: 0.0194 REMARK 3 T13: -0.0270 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.0181 L22: 0.1765 REMARK 3 L33: 0.0969 L12: 0.0205 REMARK 3 L13: 0.0253 L23: 0.1255 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: -0.0578 S13: -0.1470 REMARK 3 S21: 0.1070 S22: 0.0311 S23: -0.1429 REMARK 3 S31: 0.1795 S32: 0.2455 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3882 -47.5760 17.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.2997 REMARK 3 T33: 0.2640 T12: -0.0014 REMARK 3 T13: -0.0019 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.2526 L22: 0.7952 REMARK 3 L33: 0.5455 L12: -0.2535 REMARK 3 L13: 0.1787 L23: 0.2961 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.1486 S13: -0.0977 REMARK 3 S21: 0.2139 S22: 0.0485 S23: -0.0517 REMARK 3 S31: 0.2025 S32: 0.1282 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2664 -51.6268 4.0375 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: 0.3266 REMARK 3 T33: 0.3228 T12: 0.0314 REMARK 3 T13: -0.0058 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.3726 L22: 0.1525 REMARK 3 L33: 0.2172 L12: -0.0133 REMARK 3 L13: 0.0251 L23: 0.1629 REMARK 3 S TENSOR REMARK 3 S11: 0.1284 S12: 0.1810 S13: -0.3113 REMARK 3 S21: -0.1739 S22: 0.0943 S23: -0.3106 REMARK 3 S31: 0.3465 S32: 0.2136 S33: 0.0019 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2852 -34.2614 5.0153 REMARK 3 T TENSOR REMARK 3 T11: 0.2702 T22: 0.2691 REMARK 3 T33: 0.2624 T12: -0.0199 REMARK 3 T13: 0.0004 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.4733 L22: 0.4755 REMARK 3 L33: 0.4207 L12: -0.4750 REMARK 3 L13: -0.2463 L23: 0.2493 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: 0.1090 S13: 0.0463 REMARK 3 S21: -0.1810 S22: -0.0283 S23: -0.0744 REMARK 3 S31: -0.0353 S32: 0.0094 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7349 -19.9693 11.4144 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.4353 REMARK 3 T33: 0.3541 T12: 0.0430 REMARK 3 T13: -0.0103 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.4518 L22: 0.8652 REMARK 3 L33: 0.0305 L12: 0.5575 REMARK 3 L13: 0.0494 L23: 0.0808 REMARK 3 S TENSOR REMARK 3 S11: -0.1520 S12: 0.4468 S13: 0.3891 REMARK 3 S21: -0.3618 S22: 0.0333 S23: 0.1252 REMARK 3 S31: 0.1400 S32: 0.6460 S33: -0.0061 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 207 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7003 -30.3555 17.4520 REMARK 3 T TENSOR REMARK 3 T11: 0.2516 T22: 0.2423 REMARK 3 T33: 0.2270 T12: 0.0069 REMARK 3 T13: -0.0056 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.4038 L22: 0.6176 REMARK 3 L33: 0.8264 L12: -0.2261 REMARK 3 L13: 0.0247 L23: 0.6238 REMARK 3 S TENSOR REMARK 3 S11: -0.0926 S12: -0.0915 S13: 0.1553 REMARK 3 S21: -0.0233 S22: -0.0209 S23: 0.0554 REMARK 3 S31: -0.1114 S32: -0.0456 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47320 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.19800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.160 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES (PH 7.5), 10% (V/V) 2 REMARK 280 -PROPANOL 20% (W/V) POLYETHYLENE GLYCOL 4,000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.42000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 TYR A 7 REMARK 465 TYR A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 TYR A 15 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 ARG B 5 REMARK 465 PRO B 6 REMARK 465 TYR B 7 REMARK 465 TYR B 8 REMARK 465 GLU B 9 REMARK 465 GLU B 10 REMARK 465 SER B 11 REMARK 465 GLN B 12 REMARK 465 SER B 13 REMARK 465 ALA B 14 REMARK 465 TYR B 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 127 O HOH A 401 1.85 REMARK 500 O HOH B 626 O HOH B 631 1.92 REMARK 500 O HOH A 695 O HOH A 733 1.93 REMARK 500 O HOH A 708 O HOH A 746 1.94 REMARK 500 O HOH A 433 O HOH A 643 1.97 REMARK 500 O HOH A 654 O HOH A 736 1.98 REMARK 500 O HOH A 457 O HOH A 487 2.02 REMARK 500 OE1 GLN B 229 O HOH B 401 2.05 REMARK 500 O GLY A 202 O HOH A 402 2.05 REMARK 500 OE1 GLU A 222 O HOH A 403 2.05 REMARK 500 OE1 GLU A 203 O HOH A 404 2.06 REMARK 500 OG SER A 18 O HOH A 405 2.08 REMARK 500 O HOH B 468 O HOH B 662 2.08 REMARK 500 O HOH A 623 O HOH A 671 2.10 REMARK 500 O HOH B 666 O HOH B 673 2.10 REMARK 500 O HOH B 495 O HOH B 663 2.10 REMARK 500 O HOH B 512 O HOH B 608 2.11 REMARK 500 O SER A 197 O HOH A 406 2.12 REMARK 500 O HOH A 637 O HOH A 748 2.12 REMARK 500 O HOH B 645 O HOH B 681 2.13 REMARK 500 OE2 GLU B 151 O HOH B 402 2.14 REMARK 500 OE1 GLU A 116 O HOH A 407 2.14 REMARK 500 O HOH B 548 O HOH B 612 2.14 REMARK 500 O HOH A 530 O HOH A 688 2.14 REMARK 500 O HOH B 612 O HOH B 623 2.15 REMARK 500 O HOH A 692 O HOH B 654 2.16 REMARK 500 O HOH A 709 O HOH A 723 2.17 REMARK 500 NH2 ARG A 118 OE2 GLU A 127 2.17 REMARK 500 O HOH A 470 O HOH B 617 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 606 O HOH A 720 1655 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 197 -152.98 -114.91 REMARK 500 GLN A 253 -101.56 -121.31 REMARK 500 GLU B 203 72.76 -117.27 REMARK 500 GLN B 253 -99.71 -121.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 695 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 696 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 697 DISTANCE = 6.53 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8RAQ RELATED DB: PDB REMARK 900 MMAA1 WITH SAM REMARK 900 RELATED ID: 8RBD RELATED DB: PDB DBREF 8RBE A 1 286 UNP P0A5Q1 MMAA1_MYCBO 1 286 DBREF 8RBE B 1 286 UNP P0A5Q1 MMAA1_MYCBO 1 286 SEQADV 8RBE HIS A 0 UNP P0A5Q1 EXPRESSION TAG SEQADV 8RBE HIS B 0 UNP P0A5Q1 EXPRESSION TAG SEQRES 1 A 287 HIS MET ALA LYS LEU ARG PRO TYR TYR GLU GLU SER GLN SEQRES 2 A 287 SER ALA TYR ASP ILE SER ASP ASP PHE PHE ALA LEU PHE SEQRES 3 A 287 LEU ASP PRO THR TRP VAL TYR THR CYS ALA TYR PHE GLU SEQRES 4 A 287 ARG ASP ASP MET THR LEU GLU GLU ALA GLN LEU ALA LYS SEQRES 5 A 287 VAL ASP LEU ALA LEU ASP LYS LEU ASN LEU GLU PRO GLY SEQRES 6 A 287 MET THR LEU LEU ASP VAL GLY CYS GLY TRP GLY GLY ALA SEQRES 7 A 287 LEU VAL ARG ALA VAL GLU LYS TYR ASP VAL ASN VAL ILE SEQRES 8 A 287 GLY LEU THR LEU SER ARG ASN HIS TYR GLU ARG SER LYS SEQRES 9 A 287 ASP ARG LEU ALA ALA ILE GLY THR GLN ARG ARG ALA GLU SEQRES 10 A 287 ALA ARG LEU GLN GLY TRP GLU GLU PHE GLU GLU ASN VAL SEQRES 11 A 287 ASP ARG ILE VAL SER PHE GLU ALA PHE ASP ALA PHE LYS SEQRES 12 A 287 LYS GLU ARG TYR LEU THR PHE PHE GLU ARG SER TYR ASP SEQRES 13 A 287 ILE LEU PRO ASP ASP GLY ARG MET LEU LEU HIS SER LEU SEQRES 14 A 287 PHE THR TYR ASP ARG ARG TRP LEU HIS GLU GLN GLY ILE SEQRES 15 A 287 ALA LEU THR MET SER ASP LEU ARG PHE LEU LYS PHE LEU SEQRES 16 A 287 ARG GLU SER ILE PHE PRO GLY GLY GLU LEU PRO SER GLU SEQRES 17 A 287 PRO ASP ILE VAL ASP ASN ALA GLN ALA ALA GLY PHE THR SEQRES 18 A 287 ILE GLU HIS VAL GLN LEU LEU GLN GLN HIS TYR ALA ARG SEQRES 19 A 287 THR LEU ASP ALA TRP ALA ALA ASN LEU GLN ALA ALA ARG SEQRES 20 A 287 GLU ARG ALA ILE ALA VAL GLN SER GLU GLU VAL TYR ASN SEQRES 21 A 287 ASN PHE MET HIS TYR LEU THR GLY CYS ALA GLU ARG PHE SEQRES 22 A 287 ARG ARG GLY LEU ILE ASN VAL ALA GLN PHE THR MET THR SEQRES 23 A 287 LYS SEQRES 1 B 287 HIS MET ALA LYS LEU ARG PRO TYR TYR GLU GLU SER GLN SEQRES 2 B 287 SER ALA TYR ASP ILE SER ASP ASP PHE PHE ALA LEU PHE SEQRES 3 B 287 LEU ASP PRO THR TRP VAL TYR THR CYS ALA TYR PHE GLU SEQRES 4 B 287 ARG ASP ASP MET THR LEU GLU GLU ALA GLN LEU ALA LYS SEQRES 5 B 287 VAL ASP LEU ALA LEU ASP LYS LEU ASN LEU GLU PRO GLY SEQRES 6 B 287 MET THR LEU LEU ASP VAL GLY CYS GLY TRP GLY GLY ALA SEQRES 7 B 287 LEU VAL ARG ALA VAL GLU LYS TYR ASP VAL ASN VAL ILE SEQRES 8 B 287 GLY LEU THR LEU SER ARG ASN HIS TYR GLU ARG SER LYS SEQRES 9 B 287 ASP ARG LEU ALA ALA ILE GLY THR GLN ARG ARG ALA GLU SEQRES 10 B 287 ALA ARG LEU GLN GLY TRP GLU GLU PHE GLU GLU ASN VAL SEQRES 11 B 287 ASP ARG ILE VAL SER PHE GLU ALA PHE ASP ALA PHE LYS SEQRES 12 B 287 LYS GLU ARG TYR LEU THR PHE PHE GLU ARG SER TYR ASP SEQRES 13 B 287 ILE LEU PRO ASP ASP GLY ARG MET LEU LEU HIS SER LEU SEQRES 14 B 287 PHE THR TYR ASP ARG ARG TRP LEU HIS GLU GLN GLY ILE SEQRES 15 B 287 ALA LEU THR MET SER ASP LEU ARG PHE LEU LYS PHE LEU SEQRES 16 B 287 ARG GLU SER ILE PHE PRO GLY GLY GLU LEU PRO SER GLU SEQRES 17 B 287 PRO ASP ILE VAL ASP ASN ALA GLN ALA ALA GLY PHE THR SEQRES 18 B 287 ILE GLU HIS VAL GLN LEU LEU GLN GLN HIS TYR ALA ARG SEQRES 19 B 287 THR LEU ASP ALA TRP ALA ALA ASN LEU GLN ALA ALA ARG SEQRES 20 B 287 GLU ARG ALA ILE ALA VAL GLN SER GLU GLU VAL TYR ASN SEQRES 21 B 287 ASN PHE MET HIS TYR LEU THR GLY CYS ALA GLU ARG PHE SEQRES 22 B 287 ARG ARG GLY LEU ILE ASN VAL ALA GLN PHE THR MET THR SEQRES 23 B 287 LYS HET GOL A 301 6 HET GOL B 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *646(H2 O) HELIX 1 AA1 SER A 18 ALA A 23 1 6 HELIX 2 AA2 THR A 43 LYS A 58 1 16 HELIX 3 AA3 GLY A 75 ASP A 86 1 12 HELIX 4 AA4 SER A 95 ILE A 109 1 15 HELIX 5 AA5 GLY A 121 PHE A 125 5 5 HELIX 6 AA6 ALA A 137 PHE A 141 5 5 HELIX 7 AA7 LYS A 142 GLU A 144 5 3 HELIX 8 AA8 ARG A 145 LEU A 157 1 13 HELIX 9 AA9 ASP A 172 GLN A 179 1 8 HELIX 10 AB1 THR A 184 SER A 197 1 14 HELIX 11 AB2 SER A 206 ALA A 217 1 12 HELIX 12 AB3 LEU A 227 ALA A 245 1 19 HELIX 13 AB4 ALA A 245 GLN A 253 1 9 HELIX 14 AB5 SER A 254 ARG A 274 1 21 HELIX 15 AB6 SER B 18 ALA B 23 1 6 HELIX 16 AB7 THR B 43 LYS B 58 1 16 HELIX 17 AB8 GLY B 75 ASP B 86 1 12 HELIX 18 AB9 SER B 95 GLY B 110 1 16 HELIX 19 AC1 GLY B 121 PHE B 125 5 5 HELIX 20 AC2 ALA B 137 PHE B 141 5 5 HELIX 21 AC3 LYS B 142 GLU B 144 5 3 HELIX 22 AC4 ARG B 145 LEU B 157 1 13 HELIX 23 AC5 ASP B 172 GLN B 179 1 8 HELIX 24 AC6 THR B 184 GLU B 196 1 13 HELIX 25 AC7 SER B 206 ALA B 217 1 12 HELIX 26 AC8 LEU B 227 ALA B 245 1 19 HELIX 27 AC9 ALA B 245 GLN B 253 1 9 HELIX 28 AD1 SER B 254 ARG B 274 1 21 SHEET 1 AA1 7 ALA A 115 LEU A 119 0 SHEET 2 AA1 7 ASN A 88 THR A 93 1 N GLY A 91 O ARG A 118 SHEET 3 AA1 7 THR A 66 VAL A 70 1 N LEU A 67 O ASN A 88 SHEET 4 AA1 7 ARG A 131 PHE A 135 1 O VAL A 133 N LEU A 68 SHEET 5 AA1 7 ARG A 162 THR A 170 1 O HIS A 166 N SER A 134 SHEET 6 AA1 7 ILE A 277 THR A 285 -1 O PHE A 282 N LEU A 165 SHEET 7 AA1 7 THR A 220 LEU A 226 -1 N THR A 220 O THR A 285 SHEET 1 AA2 7 ALA B 115 LEU B 119 0 SHEET 2 AA2 7 ASN B 88 THR B 93 1 N GLY B 91 O ARG B 118 SHEET 3 AA2 7 THR B 66 VAL B 70 1 N LEU B 67 O ASN B 88 SHEET 4 AA2 7 ARG B 131 PHE B 135 1 O VAL B 133 N LEU B 68 SHEET 5 AA2 7 ARG B 162 THR B 170 1 O HIS B 166 N SER B 134 SHEET 6 AA2 7 ILE B 277 THR B 285 -1 O PHE B 282 N LEU B 165 SHEET 7 AA2 7 THR B 220 LEU B 226 -1 N THR B 220 O THR B 285 CRYST1 41.616 74.840 97.595 90.00 91.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024029 0.000000 0.000570 0.00000 SCALE2 0.000000 0.013362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010249 0.00000 CONECT 4433 4434 4435 CONECT 4434 4433 CONECT 4435 4433 4436 4437 CONECT 4436 4435 CONECT 4437 4435 4438 CONECT 4438 4437 CONECT 4439 4440 4441 CONECT 4440 4439 CONECT 4441 4439 4442 4443 CONECT 4442 4441 CONECT 4443 4441 4444 CONECT 4444 4443 MASTER 472 0 2 28 14 0 0 6 5082 2 12 46 END