HEADER TRANSPORT PROTEIN 07-DEC-23 8RD6 TITLE THE C-TERMINAL DOMAIN OF TONB PROTEIN FROM SALMONELLA ENTERICA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TONB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 GENE: TONB, STM1737; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRSF KEYWDS PROTEIN, TONB, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.IWAI,A.CIRAGAN,J.S.OEEMIG REVDAT 1 17-JAN-24 8RD6 0 JRNL AUTH P.KLUKOWSKI,F.F.DAMBERGER,F.H.ALLAIN,H.IWAI,H.KADAVATH, JRNL AUTH 2 T.A.RAMELOT,G.T.MONTELIONE,R.RIEK,P.GUNTERT JRNL TITL THE 100-PROTEIN NMR SPECTRA DATASET: A RESOURCE FOR JRNL TITL 2 BIOMOLECULAR NMR DATA ANALYSIS. JRNL REF SCI DATA V. 11 30 2024 JRNL REFN ISSN 2052-4463 JRNL PMID 38177162 JRNL DOI 10.1038/S41597-023-02879-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, AMBER REMARK 3 AUTHORS : GUENTERT (CYANA), CASE, DARDEN, CHEATHAM III, REMARK 3 SIMMERLING, WANG, DUKE, LUO, ... AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135155. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 TONB-CTD(154-242), 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CCPNMR ANALYSIS 2, REMARK 210 NMRPIPE, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 14 74.16 -113.73 REMARK 500 1 MET A 52 -42.76 -151.32 REMARK 500 1 PHE A 53 54.27 -142.64 REMARK 500 1 GLU A 67 179.35 -57.62 REMARK 500 1 ASN A 78 109.13 -59.55 REMARK 500 2 PRO A 15 -178.68 -69.77 REMARK 500 2 ASN A 51 55.27 -97.67 REMARK 500 2 MET A 52 -74.98 -151.77 REMARK 500 2 PHE A 53 47.53 -103.93 REMARK 500 3 PRO A 4 -171.10 -69.77 REMARK 500 3 PRO A 15 -171.10 -69.73 REMARK 500 3 ASN A 51 57.32 -111.11 REMARK 500 3 MET A 52 -75.10 -151.86 REMARK 500 3 GLU A 67 -171.63 -62.61 REMARK 500 3 LYS A 70 70.73 -151.91 REMARK 500 3 ILE A 79 93.50 -67.13 REMARK 500 4 PRO A 12 -171.23 -69.79 REMARK 500 4 ARG A 26 106.03 -172.49 REMARK 500 4 MET A 52 -64.73 -151.70 REMARK 500 4 GLU A 67 179.38 -57.39 REMARK 500 4 LYS A 70 69.97 -152.33 REMARK 500 5 PRO A 4 -177.09 -69.74 REMARK 500 5 PRO A 15 -173.03 -69.79 REMARK 500 5 SER A 46 124.76 -173.99 REMARK 500 5 MET A 52 -54.70 -151.31 REMARK 500 5 GLU A 67 -173.99 -62.76 REMARK 500 5 LYS A 70 69.25 -156.00 REMARK 500 5 ASN A 78 94.20 -64.62 REMARK 500 5 ILE A 79 94.89 -68.06 REMARK 500 6 TYR A 14 74.84 -113.45 REMARK 500 6 MET A 52 -48.48 -149.36 REMARK 500 6 ARG A 65 106.86 -162.43 REMARK 500 6 GLU A 67 -179.92 -59.74 REMARK 500 7 SER A 8 103.92 -168.81 REMARK 500 7 PRO A 15 -178.96 -69.70 REMARK 500 7 GLU A 24 146.83 -170.01 REMARK 500 7 MET A 52 -74.81 -125.88 REMARK 500 7 PHE A 53 54.01 -102.74 REMARK 500 8 PRO A 15 -171.12 -69.75 REMARK 500 8 ARG A 26 105.91 -174.84 REMARK 500 8 MET A 52 -43.81 -150.44 REMARK 500 8 PHE A 53 43.81 -143.46 REMARK 500 8 VAL A 57 -60.39 -109.98 REMARK 500 9 PRO A 4 -171.16 -69.74 REMARK 500 9 PRO A 12 -175.03 -69.77 REMARK 500 9 PRO A 15 -171.62 -69.74 REMARK 500 9 MET A 52 -47.04 -150.61 REMARK 500 9 VAL A 57 -61.71 -109.04 REMARK 500 9 GLU A 67 -172.19 -68.48 REMARK 500 10 PRO A 4 -170.93 -69.77 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34887 RELATED DB: BMRB REMARK 900 THE C-TERMINAL DOMAIN OF TONB PROTEIN FROM SALMONELLA ENTERICA. DBREF 8RD6 A 2 90 UNP P25945 TONB_SALTY 154 242 SEQADV 8RD6 SER A 1 UNP P25945 EXPRESSION TAG SEQRES 1 A 90 SER THR GLY PRO ARG ALA LEU SER ARG ASN GLN PRO GLN SEQRES 2 A 90 TYR PRO ALA ARG ALA GLN ALA LEU ARG ILE GLU GLY ARG SEQRES 3 A 90 VAL LYS VAL LYS PHE ASP VAL THR SER ALA GLY ARG VAL SEQRES 4 A 90 GLU ASN VAL GLN ILE LEU SER ALA GLN PRO ALA ASN MET SEQRES 5 A 90 PHE GLU ARG GLU VAL LYS ASN ALA MET ARG LYS TRP ARG SEQRES 6 A 90 TYR GLU ALA GLY LYS PRO GLY SER GLY LEU VAL VAL ASN SEQRES 7 A 90 ILE ILE PHE ARG LEU ASN GLY THR ALA GLN ILE GLU HELIX 1 AA1 PRO A 15 ARG A 22 1 8 HELIX 2 AA2 VAL A 57 ARG A 62 1 6 SHEET 1 AA1 2 ALA A 6 SER A 8 0 SHEET 2 AA1 2 ARG A 65 TYR A 66 -1 O ARG A 65 N LEU A 7 SHEET 1 AA2 4 VAL A 39 ALA A 47 0 SHEET 2 AA2 4 ARG A 26 VAL A 33 -1 N LYS A 28 O SER A 46 SHEET 3 AA2 4 VAL A 77 ARG A 82 -1 O ILE A 79 N VAL A 27 SHEET 4 AA2 4 THR A 86 ALA A 87 -1 N THR A 86 O ARG A 82 CISPEP 1 GLN A 48 PRO A 49 1 0.05 CISPEP 2 GLN A 48 PRO A 49 2 -0.02 CISPEP 3 GLN A 48 PRO A 49 3 0.01 CISPEP 4 GLN A 48 PRO A 49 4 0.00 CISPEP 5 GLN A 48 PRO A 49 5 0.03 CISPEP 6 GLN A 48 PRO A 49 6 -0.01 CISPEP 7 GLN A 48 PRO A 49 7 0.02 CISPEP 8 GLN A 48 PRO A 49 8 -0.01 CISPEP 9 GLN A 48 PRO A 49 9 -0.02 CISPEP 10 GLN A 48 PRO A 49 10 0.02 CISPEP 11 GLN A 48 PRO A 49 11 0.00 CISPEP 12 GLN A 48 PRO A 49 12 0.04 CISPEP 13 GLN A 48 PRO A 49 13 -0.04 CISPEP 14 GLN A 48 PRO A 49 14 0.01 CISPEP 15 GLN A 48 PRO A 49 15 -0.11 CISPEP 16 GLN A 48 PRO A 49 16 -0.03 CISPEP 17 GLN A 48 PRO A 49 17 -0.02 CISPEP 18 GLN A 48 PRO A 49 18 -0.03 CISPEP 19 GLN A 48 PRO A 49 19 0.01 CISPEP 20 GLN A 48 PRO A 49 20 -0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1