HEADER RNA BINDING PROTEIN 08-DEC-23 8RDY TITLE SACCHAROMYCES CEREVISIAE PRP43 HELICASE IN COMPLEX WITH PXR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP43; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME,PROTEIN COMPND 7 PXR1; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: G-PATCH NUCLEOLAR PROTEIN,PINX1-RELATED PROTEIN 1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PRP43; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SCHISTOSOMA JAPONICUM, SACCHAROMYCES SOURCE 10 CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 12 ORGANISM_TAXID: 6182, 4932; SOURCE 13 GENE: PXR1, GNO1, YGR280C; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRERIBOSOME, HELICASE, RIBOSOME ASSEMBLY, INHIBITOR, RNA BINDING KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.RABL,D.PORTUGAL CALISTO,V.G.PANSE REVDAT 1 23-OCT-24 8RDY 0 JRNL AUTH D.PORTUGAL HNIZDA CALISTO,J.RABL,V.G.PANSE JRNL TITL AN INHIBITORY SEGMENT WITHIN G-PATCH ACTIVATORS TUNES JRNL TITL 2 PRP43-ATPASE ACTIVITY DURING RIBOSOME ASSEMBLY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : TOPAZ, CRYOSPARC, UCSF CHIMERA, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.330 REMARK 3 NUMBER OF PARTICLES : 258878 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8RDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135005. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SACCHAROMYCES CEREVISIAE PRP43 REMARK 245 -PXR1 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : RECOMBINANTLY EXPRESSED REMARK 245 HELICASE PRP43 IN COMPLEX WITH PXR1 REGULATORY PROTEIN REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -36 REMARK 465 ALA A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 SER A -28 REMARK 465 ALA A -27 REMARK 465 ALA A -26 REMARK 465 LEU A -25 REMARK 465 GLU A -24 REMARK 465 VAL A -23 REMARK 465 LEU A -22 REMARK 465 PHE A -21 REMARK 465 GLN A -20 REMARK 465 GLY A -19 REMARK 465 PRO A -18 REMARK 465 GLY A -17 REMARK 465 TYR A -16 REMARK 465 GLN A -15 REMARK 465 ASP A -14 REMARK 465 PRO A -13 REMARK 465 ASN A -12 REMARK 465 SER A -11 REMARK 465 VAL A -10 REMARK 465 GLN A -9 REMARK 465 ALA A -8 REMARK 465 LEU A -7 REMARK 465 ALA A -6 REMARK 465 ARG A -5 REMARK 465 PRO A -4 REMARK 465 THR A -3 REMARK 465 SER A -2 REMARK 465 VAL A -1 REMARK 465 ASP A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 PHE A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 HIS A 11 REMARK 465 PRO A 12 REMARK 465 ASP A 13 REMARK 465 PRO A 14 REMARK 465 VAL A 15 REMARK 465 GLU A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 ILE A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 GLN A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 ILE A 26 REMARK 465 ALA A 27 REMARK 465 GLU A 28 REMARK 465 GLU A 29 REMARK 465 LEU A 30 REMARK 465 SER A 31 REMARK 465 LYS A 32 REMARK 465 GLN A 33 REMARK 465 HIS A 34 REMARK 465 PRO A 35 REMARK 465 LEU A 36 REMARK 465 PRO A 37 REMARK 465 SER A 38 REMARK 465 GLU A 39 REMARK 465 GLU A 40 REMARK 465 PRO A 41 REMARK 465 LEU A 42 REMARK 465 VAL A 43 REMARK 465 HIS A 44 REMARK 465 HIS A 45 REMARK 465 ASP A 46 REMARK 465 ALA A 47 REMARK 465 GLY A 48 REMARK 465 GLU A 49 REMARK 465 PHE A 50 REMARK 465 LYS A 51 REMARK 465 ALA A 667 REMARK 465 LYS A 668 REMARK 465 ILE A 719 REMARK 465 GLU A 720 REMARK 465 ILE A 721 REMARK 465 ALA A 722 REMARK 465 PRO A 723 REMARK 465 ALA A 724 REMARK 465 TYR A 725 REMARK 465 TYR A 726 REMARK 465 ASP A 727 REMARK 465 LEU A 728 REMARK 465 SER A 729 REMARK 465 ASN A 730 REMARK 465 PHE A 731 REMARK 465 GLN A 732 REMARK 465 LYS A 733 REMARK 465 GLY A 734 REMARK 465 ASP A 735 REMARK 465 VAL A 736 REMARK 465 LYS A 737 REMARK 465 LEU A 738 REMARK 465 SER A 739 REMARK 465 LEU A 740 REMARK 465 GLU A 741 REMARK 465 ARG A 742 REMARK 465 ILE A 743 REMARK 465 LYS A 744 REMARK 465 GLU A 745 REMARK 465 LYS A 746 REMARK 465 VAL A 747 REMARK 465 ASP A 748 REMARK 465 ARG A 749 REMARK 465 LEU A 750 REMARK 465 ASN A 751 REMARK 465 GLU A 752 REMARK 465 LEU A 753 REMARK 465 LYS A 754 REMARK 465 GLN A 755 REMARK 465 GLY A 756 REMARK 465 LYS A 757 REMARK 465 ASN A 758 REMARK 465 LYS A 759 REMARK 465 LYS A 760 REMARK 465 LYS A 761 REMARK 465 SER A 762 REMARK 465 LYS A 763 REMARK 465 HIS A 764 REMARK 465 SER A 765 REMARK 465 LYS A 766 REMARK 465 LYS A 767 REMARK 465 MET B -230 REMARK 465 SER B -229 REMARK 465 PRO B -228 REMARK 465 ILE B -227 REMARK 465 LEU B -226 REMARK 465 GLY B -225 REMARK 465 TYR B -224 REMARK 465 TRP B -223 REMARK 465 LYS B -222 REMARK 465 ILE B -221 REMARK 465 LYS B -220 REMARK 465 GLY B -219 REMARK 465 LEU B -218 REMARK 465 VAL B -217 REMARK 465 GLN B -216 REMARK 465 PRO B -215 REMARK 465 THR B -214 REMARK 465 ARG B -213 REMARK 465 LEU B -212 REMARK 465 LEU B -211 REMARK 465 LEU B -210 REMARK 465 GLU B -209 REMARK 465 TYR B -208 REMARK 465 LEU B -207 REMARK 465 GLU B -206 REMARK 465 GLU B -205 REMARK 465 LYS B -204 REMARK 465 TYR B -203 REMARK 465 GLU B -202 REMARK 465 GLU B -201 REMARK 465 HIS B -200 REMARK 465 LEU B -199 REMARK 465 TYR B -198 REMARK 465 GLU B -197 REMARK 465 ARG B -196 REMARK 465 ASP B -195 REMARK 465 GLU B -194 REMARK 465 GLY B -193 REMARK 465 ASP B -192 REMARK 465 LYS B -191 REMARK 465 TRP B -190 REMARK 465 ARG B -189 REMARK 465 ASN B -188 REMARK 465 LYS B -187 REMARK 465 LYS B -186 REMARK 465 PHE B -185 REMARK 465 GLU B -184 REMARK 465 LEU B -183 REMARK 465 GLY B -182 REMARK 465 LEU B -181 REMARK 465 GLU B -180 REMARK 465 PHE B -179 REMARK 465 PRO B -178 REMARK 465 ASN B -177 REMARK 465 LEU B -176 REMARK 465 PRO B -175 REMARK 465 TYR B -174 REMARK 465 TYR B -173 REMARK 465 ILE B -172 REMARK 465 ASP B -171 REMARK 465 GLY B -170 REMARK 465 ASP B -169 REMARK 465 VAL B -168 REMARK 465 LYS B -167 REMARK 465 LEU B -166 REMARK 465 THR B -165 REMARK 465 GLN B -164 REMARK 465 SER B -163 REMARK 465 MET B -162 REMARK 465 ALA B -161 REMARK 465 ILE B -160 REMARK 465 ILE B -159 REMARK 465 ARG B -158 REMARK 465 TYR B -157 REMARK 465 ILE B -156 REMARK 465 ALA B -155 REMARK 465 ASP B -154 REMARK 465 LYS B -153 REMARK 465 HIS B -152 REMARK 465 ASN B -151 REMARK 465 MET B -150 REMARK 465 LEU B -149 REMARK 465 GLY B -148 REMARK 465 GLY B -147 REMARK 465 CYS B -146 REMARK 465 PRO B -145 REMARK 465 LYS B -144 REMARK 465 GLU B -143 REMARK 465 ARG B -142 REMARK 465 ALA B -141 REMARK 465 GLU B -140 REMARK 465 ILE B -139 REMARK 465 SER B -138 REMARK 465 MET B -137 REMARK 465 LEU B -136 REMARK 465 GLU B -135 REMARK 465 GLY B -134 REMARK 465 ALA B -133 REMARK 465 VAL B -132 REMARK 465 LEU B -131 REMARK 465 ASP B -130 REMARK 465 ILE B -129 REMARK 465 ARG B -128 REMARK 465 TYR B -127 REMARK 465 GLY B -126 REMARK 465 VAL B -125 REMARK 465 SER B -124 REMARK 465 ARG B -123 REMARK 465 ILE B -122 REMARK 465 ALA B -121 REMARK 465 TYR B -120 REMARK 465 SER B -119 REMARK 465 LYS B -118 REMARK 465 ASP B -117 REMARK 465 PHE B -116 REMARK 465 GLU B -115 REMARK 465 THR B -114 REMARK 465 LEU B -113 REMARK 465 LYS B -112 REMARK 465 VAL B -111 REMARK 465 ASP B -110 REMARK 465 PHE B -109 REMARK 465 LEU B -108 REMARK 465 SER B -107 REMARK 465 LYS B -106 REMARK 465 LEU B -105 REMARK 465 PRO B -104 REMARK 465 GLU B -103 REMARK 465 MET B -102 REMARK 465 LEU B -101 REMARK 465 LYS B -100 REMARK 465 MET B -99 REMARK 465 PHE B -98 REMARK 465 GLU B -97 REMARK 465 ASP B -96 REMARK 465 ARG B -95 REMARK 465 LEU B -94 REMARK 465 CYS B -93 REMARK 465 HIS B -92 REMARK 465 LYS B -91 REMARK 465 THR B -90 REMARK 465 TYR B -89 REMARK 465 LEU B -88 REMARK 465 ASN B -87 REMARK 465 GLY B -86 REMARK 465 ASP B -85 REMARK 465 HIS B -84 REMARK 465 VAL B -83 REMARK 465 THR B -82 REMARK 465 HIS B -81 REMARK 465 PRO B -80 REMARK 465 ASP B -79 REMARK 465 PHE B -78 REMARK 465 MET B -77 REMARK 465 LEU B -76 REMARK 465 TYR B -75 REMARK 465 ASP B -74 REMARK 465 ALA B -73 REMARK 465 LEU B -72 REMARK 465 ASP B -71 REMARK 465 VAL B -70 REMARK 465 VAL B -69 REMARK 465 LEU B -68 REMARK 465 TYR B -67 REMARK 465 MET B -66 REMARK 465 ASP B -65 REMARK 465 PRO B -64 REMARK 465 MET B -63 REMARK 465 CYS B -62 REMARK 465 LEU B -61 REMARK 465 ASP B -60 REMARK 465 ALA B -59 REMARK 465 PHE B -58 REMARK 465 PRO B -57 REMARK 465 LYS B -56 REMARK 465 LEU B -55 REMARK 465 VAL B -54 REMARK 465 CYS B -53 REMARK 465 PHE B -52 REMARK 465 LYS B -51 REMARK 465 LYS B -50 REMARK 465 ARG B -49 REMARK 465 ILE B -48 REMARK 465 GLU B -47 REMARK 465 ALA B -46 REMARK 465 ILE B -45 REMARK 465 PRO B -44 REMARK 465 GLN B -43 REMARK 465 ILE B -42 REMARK 465 ASP B -41 REMARK 465 LYS B -40 REMARK 465 TYR B -39 REMARK 465 LEU B -38 REMARK 465 LYS B -37 REMARK 465 SER B -36 REMARK 465 SER B -35 REMARK 465 LYS B -34 REMARK 465 TYR B -33 REMARK 465 ILE B -32 REMARK 465 ALA B -31 REMARK 465 TRP B -30 REMARK 465 PRO B -29 REMARK 465 LEU B -28 REMARK 465 GLN B -27 REMARK 465 GLY B -26 REMARK 465 TRP B -25 REMARK 465 GLN B -24 REMARK 465 ALA B -23 REMARK 465 THR B -22 REMARK 465 PHE B -21 REMARK 465 GLY B -20 REMARK 465 GLY B -19 REMARK 465 GLY B -18 REMARK 465 ASP B -17 REMARK 465 HIS B -16 REMARK 465 PRO B -15 REMARK 465 PRO B -14 REMARK 465 LYS B -13 REMARK 465 SER B -12 REMARK 465 ASP B -11 REMARK 465 LEU B -10 REMARK 465 GLU B -9 REMARK 465 VAL B -8 REMARK 465 LEU B -7 REMARK 465 PHE B -6 REMARK 465 GLN B -5 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 THR B 8 REMARK 465 LYS B 9 REMARK 465 GLN B 10 REMARK 465 ARG B 11 REMARK 465 PHE B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 ASP B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 ASN B 18 REMARK 465 THR B 19 REMARK 465 ALA B 20 REMARK 465 TRP B 21 REMARK 465 SER B 22 REMARK 465 ASN B 23 REMARK 465 ASP B 24 REMARK 465 THR B 25 REMARK 465 SER B 26 REMARK 465 ARG B 27 REMARK 465 PHE B 28 REMARK 465 GLY B 29 REMARK 465 HIS B 30 REMARK 465 GLN B 31 REMARK 465 PHE B 32 REMARK 465 LEU B 33 REMARK 465 GLU B 34 REMARK 465 LYS B 35 REMARK 465 PHE B 36 REMARK 465 GLY B 37 REMARK 465 TRP B 38 REMARK 465 LYS B 39 REMARK 465 PRO B 40 REMARK 465 GLY B 41 REMARK 465 MET B 42 REMARK 465 GLY B 43 REMARK 465 LEU B 44 REMARK 465 GLY B 45 REMARK 465 LEU B 46 REMARK 465 SER B 47 REMARK 465 PRO B 48 REMARK 465 MET B 49 REMARK 465 ASN B 50 REMARK 465 SER B 51 REMARK 465 ASN B 52 REMARK 465 THR B 53 REMARK 465 SER B 54 REMARK 465 HIS B 55 REMARK 465 ILE B 56 REMARK 465 LYS B 57 REMARK 465 VAL B 58 REMARK 465 SER B 59 REMARK 465 ILE B 60 REMARK 465 LYS B 61 REMARK 465 ASP B 62 REMARK 465 ASP B 63 REMARK 465 ASN B 64 REMARK 465 VAL B 65 REMARK 465 GLY B 66 REMARK 465 LEU B 67 REMARK 465 GLY B 68 REMARK 465 ALA B 69 REMARK 465 LYS B 70 REMARK 465 LEU B 71 REMARK 465 LYS B 72 REMARK 465 ARG B 73 REMARK 465 LYS B 74 REMARK 465 ASP B 75 REMARK 465 LYS B 76 REMARK 465 LYS B 77 REMARK 465 ASP B 78 REMARK 465 GLU B 79 REMARK 465 PHE B 80 REMARK 465 ASP B 81 REMARK 465 ASN B 82 REMARK 465 GLY B 83 REMARK 465 GLU B 84 REMARK 465 CYS B 85 REMARK 465 ALA B 86 REMARK 465 GLY B 87 REMARK 465 LEU B 88 REMARK 465 ASP B 89 REMARK 465 VAL B 90 REMARK 465 PHE B 91 REMARK 465 GLN B 92 REMARK 465 ARG B 93 REMARK 465 ILE B 94 REMARK 465 LEU B 95 REMARK 465 GLY B 96 REMARK 465 ARG B 97 REMARK 465 LEU B 98 REMARK 465 ASN B 99 REMARK 465 GLY B 100 REMARK 465 LYS B 101 REMARK 465 GLU B 102 REMARK 465 SER B 103 REMARK 465 LYS B 104 REMARK 465 ILE B 105 REMARK 465 SER B 106 REMARK 465 GLU B 107 REMARK 465 GLU B 108 REMARK 465 LEU B 109 REMARK 465 ASP B 110 REMARK 465 THR B 111 REMARK 465 GLN B 112 REMARK 465 ARG B 113 REMARK 465 LYS B 114 REMARK 465 GLN B 115 REMARK 465 LYS B 116 REMARK 465 ILE B 117 REMARK 465 ILE B 118 REMARK 465 ASP B 119 REMARK 465 GLY B 120 REMARK 465 LYS B 121 REMARK 465 ASP B 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP B 122 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 122 CZ3 CH2 REMARK 470 HIS B 125 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 170 -60.07 -94.29 REMARK 500 PHE A 178 -0.88 76.40 REMARK 500 PHE A 259 32.06 -97.07 REMARK 500 ASN A 377 19.38 52.47 REMARK 500 LEU A 439 58.30 -95.20 REMARK 500 ASP A 675 -6.03 76.13 REMARK 500 THR A 709 60.49 61.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 123 OG1 REMARK 620 2 ADP A1201 O1B 90.5 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-19078 RELATED DB: EMDB REMARK 900 SACCHAROMYCES CEREVISIAE PRP43 HELICASE IN COMPLEX WITH PXR1 DBREF 8RDY A 1 767 UNP P53131 PRP43_YEAST 1 767 DBREF 8RDY B -230 -13 UNP P08515 GST26_SCHJA 1 218 DBREF 8RDY B 1 137 UNP P53335 PXR1_YEAST 1 137 SEQADV 8RDY MET A -36 UNP P53131 INITIATING METHIONINE SEQADV 8RDY ALA A -35 UNP P53131 EXPRESSION TAG SEQADV 8RDY HIS A -34 UNP P53131 EXPRESSION TAG SEQADV 8RDY HIS A -33 UNP P53131 EXPRESSION TAG SEQADV 8RDY HIS A -32 UNP P53131 EXPRESSION TAG SEQADV 8RDY HIS A -31 UNP P53131 EXPRESSION TAG SEQADV 8RDY HIS A -30 UNP P53131 EXPRESSION TAG SEQADV 8RDY HIS A -29 UNP P53131 EXPRESSION TAG SEQADV 8RDY SER A -28 UNP P53131 EXPRESSION TAG SEQADV 8RDY ALA A -27 UNP P53131 EXPRESSION TAG SEQADV 8RDY ALA A -26 UNP P53131 EXPRESSION TAG SEQADV 8RDY LEU A -25 UNP P53131 EXPRESSION TAG SEQADV 8RDY GLU A -24 UNP P53131 EXPRESSION TAG SEQADV 8RDY VAL A -23 UNP P53131 EXPRESSION TAG SEQADV 8RDY LEU A -22 UNP P53131 EXPRESSION TAG SEQADV 8RDY PHE A -21 UNP P53131 EXPRESSION TAG SEQADV 8RDY GLN A -20 UNP P53131 EXPRESSION TAG SEQADV 8RDY GLY A -19 UNP P53131 EXPRESSION TAG SEQADV 8RDY PRO A -18 UNP P53131 EXPRESSION TAG SEQADV 8RDY GLY A -17 UNP P53131 EXPRESSION TAG SEQADV 8RDY TYR A -16 UNP P53131 EXPRESSION TAG SEQADV 8RDY GLN A -15 UNP P53131 EXPRESSION TAG SEQADV 8RDY ASP A -14 UNP P53131 EXPRESSION TAG SEQADV 8RDY PRO A -13 UNP P53131 EXPRESSION TAG SEQADV 8RDY ASN A -12 UNP P53131 EXPRESSION TAG SEQADV 8RDY SER A -11 UNP P53131 EXPRESSION TAG SEQADV 8RDY VAL A -10 UNP P53131 EXPRESSION TAG SEQADV 8RDY GLN A -9 UNP P53131 EXPRESSION TAG SEQADV 8RDY ALA A -8 UNP P53131 EXPRESSION TAG SEQADV 8RDY LEU A -7 UNP P53131 EXPRESSION TAG SEQADV 8RDY ALA A -6 UNP P53131 EXPRESSION TAG SEQADV 8RDY ARG A -5 UNP P53131 EXPRESSION TAG SEQADV 8RDY PRO A -4 UNP P53131 EXPRESSION TAG SEQADV 8RDY THR A -3 UNP P53131 EXPRESSION TAG SEQADV 8RDY SER A -2 UNP P53131 EXPRESSION TAG SEQADV 8RDY VAL A -1 UNP P53131 EXPRESSION TAG SEQADV 8RDY ASP A 0 UNP P53131 EXPRESSION TAG SEQADV 8RDY SER B -12 UNP P08515 LINKER SEQADV 8RDY ASP B -11 UNP P08515 LINKER SEQADV 8RDY LEU B -10 UNP P08515 LINKER SEQADV 8RDY GLU B -9 UNP P08515 LINKER SEQADV 8RDY VAL B -8 UNP P08515 LINKER SEQADV 8RDY LEU B -7 UNP P08515 LINKER SEQADV 8RDY PHE B -6 UNP P08515 LINKER SEQADV 8RDY GLN B -5 UNP P08515 LINKER SEQADV 8RDY GLY B -4 UNP P08515 LINKER SEQADV 8RDY PRO B -3 UNP P08515 LINKER SEQADV 8RDY LEU B -2 UNP P08515 LINKER SEQADV 8RDY GLY B -1 UNP P08515 LINKER SEQADV 8RDY SER B 0 UNP P08515 LINKER SEQRES 1 A 804 MET ALA HIS HIS HIS HIS HIS HIS SER ALA ALA LEU GLU SEQRES 2 A 804 VAL LEU PHE GLN GLY PRO GLY TYR GLN ASP PRO ASN SER SEQRES 3 A 804 VAL GLN ALA LEU ALA ARG PRO THR SER VAL ASP MET GLY SEQRES 4 A 804 SER LYS ARG ARG PHE SER SER GLU HIS PRO ASP PRO VAL SEQRES 5 A 804 GLU THR SER ILE PRO GLU GLN ALA ALA GLU ILE ALA GLU SEQRES 6 A 804 GLU LEU SER LYS GLN HIS PRO LEU PRO SER GLU GLU PRO SEQRES 7 A 804 LEU VAL HIS HIS ASP ALA GLY GLU PHE LYS GLY LEU GLN SEQRES 8 A 804 ARG HIS HIS THR SER ALA GLU GLU ALA GLN LYS LEU GLU SEQRES 9 A 804 ASP GLY LYS ILE ASN PRO PHE THR GLY ARG GLU PHE THR SEQRES 10 A 804 PRO LYS TYR VAL ASP ILE LEU LYS ILE ARG ARG GLU LEU SEQRES 11 A 804 PRO VAL HIS ALA GLN ARG ASP GLU PHE LEU LYS LEU TYR SEQRES 12 A 804 GLN ASN ASN GLN ILE MET VAL PHE VAL GLY GLU THR GLY SEQRES 13 A 804 SER GLY LYS THR THR GLN ILE PRO GLN PHE VAL LEU PHE SEQRES 14 A 804 ASP GLU MET PRO HIS LEU GLU ASN THR GLN VAL ALA CYS SEQRES 15 A 804 THR GLN PRO ARG ARG VAL ALA ALA MET SER VAL ALA GLN SEQRES 16 A 804 ARG VAL ALA GLU GLU MET ASP VAL LYS LEU GLY GLU GLU SEQRES 17 A 804 VAL GLY TYR SER ILE ARG PHE GLU ASN LYS THR SER ASN SEQRES 18 A 804 LYS THR ILE LEU LYS TYR MET THR ASP GLY MET LEU LEU SEQRES 19 A 804 ARG GLU ALA MET GLU ASP HIS ASP LEU SER ARG TYR SER SEQRES 20 A 804 CYS ILE ILE LEU ASP GLU ALA HIS GLU ARG THR LEU ALA SEQRES 21 A 804 THR ASP ILE LEU MET GLY LEU LEU LYS GLN VAL VAL LYS SEQRES 22 A 804 ARG ARG PRO ASP LEU LYS ILE ILE ILE MET SER ALA THR SEQRES 23 A 804 LEU ASP ALA GLU LYS PHE GLN ARG TYR PHE ASN ASP ALA SEQRES 24 A 804 PRO LEU LEU ALA VAL PRO GLY ARG THR TYR PRO VAL GLU SEQRES 25 A 804 LEU TYR TYR THR PRO GLU PHE GLN ARG ASP TYR LEU ASP SEQRES 26 A 804 SER ALA ILE ARG THR VAL LEU GLN ILE HIS ALA THR GLU SEQRES 27 A 804 GLU ALA GLY ASP ILE LEU LEU PHE LEU THR GLY GLU ASP SEQRES 28 A 804 GLU ILE GLU ASP ALA VAL ARG LYS ILE SER LEU GLU GLY SEQRES 29 A 804 ASP GLN LEU VAL ARG GLU GLU GLY CYS GLY PRO LEU SER SEQRES 30 A 804 VAL TYR PRO LEU TYR GLY SER LEU PRO PRO HIS GLN GLN SEQRES 31 A 804 GLN ARG ILE PHE GLU PRO ALA PRO GLU SER HIS ASN GLY SEQRES 32 A 804 ARG PRO GLY ARG LYS VAL VAL ILE SER THR ASN ILE ALA SEQRES 33 A 804 GLU THR SER LEU THR ILE ASP GLY ILE VAL TYR VAL VAL SEQRES 34 A 804 ASP PRO GLY PHE SER LYS GLN LYS VAL TYR ASN PRO ARG SEQRES 35 A 804 ILE ARG VAL GLU SER LEU LEU VAL SER PRO ILE SER LYS SEQRES 36 A 804 ALA SER ALA GLN GLN ARG ALA GLY ARG ALA GLY ARG THR SEQRES 37 A 804 ARG PRO GLY LYS CYS PHE ARG LEU TYR THR GLU GLU ALA SEQRES 38 A 804 PHE GLN LYS GLU LEU ILE GLU GLN SER TYR PRO GLU ILE SEQRES 39 A 804 LEU ARG SER ASN LEU SER SER THR VAL LEU GLU LEU LYS SEQRES 40 A 804 LYS LEU GLY ILE ASP ASP LEU VAL HIS PHE ASP PHE MET SEQRES 41 A 804 ASP PRO PRO ALA PRO GLU THR MET MET ARG ALA LEU GLU SEQRES 42 A 804 GLU LEU ASN TYR LEU ALA CYS LEU ASP ASP GLU GLY ASN SEQRES 43 A 804 LEU THR PRO LEU GLY ARG LEU ALA SER GLN PHE PRO LEU SEQRES 44 A 804 ASP PRO MET LEU ALA VAL MET LEU ILE GLY SER PHE GLU SEQRES 45 A 804 PHE GLN CYS SER GLN GLU ILE LEU THR ILE VAL ALA MET SEQRES 46 A 804 LEU SER VAL PRO ASN VAL PHE ILE ARG PRO THR LYS ASP SEQRES 47 A 804 LYS LYS ARG ALA ASP ASP ALA LYS ASN ILE PHE ALA HIS SEQRES 48 A 804 PRO ASP GLY ASP HIS ILE THR LEU LEU ASN VAL TYR HIS SEQRES 49 A 804 ALA PHE LYS SER ASP GLU ALA TYR GLU TYR GLY ILE HIS SEQRES 50 A 804 LYS TRP CYS ARG ASP HIS TYR LEU ASN TYR ARG SER LEU SEQRES 51 A 804 SER ALA ALA ASP ASN ILE ARG SER GLN LEU GLU ARG LEU SEQRES 52 A 804 MET ASN ARG TYR ASN LEU GLU LEU ASN THR THR ASP TYR SEQRES 53 A 804 GLU SER PRO LYS TYR PHE ASP ASN ILE ARG LYS ALA LEU SEQRES 54 A 804 ALA SER GLY PHE PHE MET GLN VAL ALA LYS LYS ARG SER SEQRES 55 A 804 GLY ALA LYS GLY TYR ILE THR VAL LYS ASP ASN GLN ASP SEQRES 56 A 804 VAL LEU ILE HIS PRO SER THR VAL LEU GLY HIS ASP ALA SEQRES 57 A 804 GLU TRP VAL ILE TYR ASN GLU PHE VAL LEU THR SER LYS SEQRES 58 A 804 ASN TYR ILE ARG THR VAL THR SER VAL ARG PRO GLU TRP SEQRES 59 A 804 LEU ILE GLU ILE ALA PRO ALA TYR TYR ASP LEU SER ASN SEQRES 60 A 804 PHE GLN LYS GLY ASP VAL LYS LEU SER LEU GLU ARG ILE SEQRES 61 A 804 LYS GLU LYS VAL ASP ARG LEU ASN GLU LEU LYS GLN GLY SEQRES 62 A 804 LYS ASN LYS LYS LYS SER LYS HIS SER LYS LYS SEQRES 1 B 368 MET SER PRO ILE LEU GLY TYR TRP LYS ILE LYS GLY LEU SEQRES 2 B 368 VAL GLN PRO THR ARG LEU LEU LEU GLU TYR LEU GLU GLU SEQRES 3 B 368 LYS TYR GLU GLU HIS LEU TYR GLU ARG ASP GLU GLY ASP SEQRES 4 B 368 LYS TRP ARG ASN LYS LYS PHE GLU LEU GLY LEU GLU PHE SEQRES 5 B 368 PRO ASN LEU PRO TYR TYR ILE ASP GLY ASP VAL LYS LEU SEQRES 6 B 368 THR GLN SER MET ALA ILE ILE ARG TYR ILE ALA ASP LYS SEQRES 7 B 368 HIS ASN MET LEU GLY GLY CYS PRO LYS GLU ARG ALA GLU SEQRES 8 B 368 ILE SER MET LEU GLU GLY ALA VAL LEU ASP ILE ARG TYR SEQRES 9 B 368 GLY VAL SER ARG ILE ALA TYR SER LYS ASP PHE GLU THR SEQRES 10 B 368 LEU LYS VAL ASP PHE LEU SER LYS LEU PRO GLU MET LEU SEQRES 11 B 368 LYS MET PHE GLU ASP ARG LEU CYS HIS LYS THR TYR LEU SEQRES 12 B 368 ASN GLY ASP HIS VAL THR HIS PRO ASP PHE MET LEU TYR SEQRES 13 B 368 ASP ALA LEU ASP VAL VAL LEU TYR MET ASP PRO MET CYS SEQRES 14 B 368 LEU ASP ALA PHE PRO LYS LEU VAL CYS PHE LYS LYS ARG SEQRES 15 B 368 ILE GLU ALA ILE PRO GLN ILE ASP LYS TYR LEU LYS SER SEQRES 16 B 368 SER LYS TYR ILE ALA TRP PRO LEU GLN GLY TRP GLN ALA SEQRES 17 B 368 THR PHE GLY GLY GLY ASP HIS PRO PRO LYS SER ASP LEU SEQRES 18 B 368 GLU VAL LEU PHE GLN GLY PRO LEU GLY SER MET GLY LEU SEQRES 19 B 368 ALA ALA THR ARG THR LYS GLN ARG PHE GLY LEU ASP PRO SEQRES 20 B 368 ARG ASN THR ALA TRP SER ASN ASP THR SER ARG PHE GLY SEQRES 21 B 368 HIS GLN PHE LEU GLU LYS PHE GLY TRP LYS PRO GLY MET SEQRES 22 B 368 GLY LEU GLY LEU SER PRO MET ASN SER ASN THR SER HIS SEQRES 23 B 368 ILE LYS VAL SER ILE LYS ASP ASP ASN VAL GLY LEU GLY SEQRES 24 B 368 ALA LYS LEU LYS ARG LYS ASP LYS LYS ASP GLU PHE ASP SEQRES 25 B 368 ASN GLY GLU CYS ALA GLY LEU ASP VAL PHE GLN ARG ILE SEQRES 26 B 368 LEU GLY ARG LEU ASN GLY LYS GLU SER LYS ILE SER GLU SEQRES 27 B 368 GLU LEU ASP THR GLN ARG LYS GLN LYS ILE ILE ASP GLY SEQRES 28 B 368 LYS TRP GLY ILE HIS PHE VAL LYS GLY GLU VAL LEU ALA SEQRES 29 B 368 SER THR TRP ASP HET ADP A1201 39 HET MG A1202 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ HELIX 1 AA1 SER A 59 ASP A 68 1 10 HELIX 2 AA2 THR A 80 ARG A 91 1 12 HELIX 3 AA3 LEU A 93 ASN A 108 1 16 HELIX 4 AA4 GLN A 125 MET A 135 1 11 HELIX 5 AA5 PRO A 136 GLU A 139 5 4 HELIX 6 AA6 ARG A 149 MET A 164 1 16 HELIX 7 AA7 ASP A 193 ASP A 203 1 11 HELIX 8 AA8 THR A 221 ARG A 238 1 18 HELIX 9 AA9 ALA A 252 PHE A 259 1 8 HELIX 10 AB1 ASP A 285 GLU A 301 1 17 HELIX 11 AB2 GLY A 312 GLY A 335 1 24 HELIX 12 AB3 PRO A 349 GLN A 354 1 6 HELIX 13 AB4 ARG A 355 GLU A 358 5 4 HELIX 14 AB5 SER A 417 ARG A 427 1 11 HELIX 15 AB6 THR A 441 GLU A 448 1 8 HELIX 16 AB7 PRO A 455 SER A 460 5 6 HELIX 17 AB8 ASN A 461 LEU A 472 1 12 HELIX 18 AB9 ALA A 487 LEU A 501 1 15 HELIX 19 AC1 THR A 511 PHE A 520 1 10 HELIX 20 AC2 ASP A 523 SER A 533 1 11 HELIX 21 AC3 PHE A 534 GLN A 537 5 4 HELIX 22 AC4 CYS A 538 SER A 550 1 13 HELIX 23 AC5 ASP A 561 ALA A 573 1 13 HELIX 24 AC6 GLY A 577 LYS A 590 1 14 HELIX 25 AC7 SER A 591 GLY A 598 1 8 HELIX 26 AC8 GLY A 598 HIS A 606 1 9 HELIX 27 AC9 ASN A 609 ASN A 631 1 23 HELIX 28 AD1 LYS A 643 SER A 654 1 12 HELIX 29 AD2 ARG A 714 LEU A 718 5 5 SHEET 1 AA1 8 GLU A 179 LYS A 181 0 SHEET 2 AA1 8 VAL A 172 ILE A 176 -1 N ILE A 176 O GLU A 179 SHEET 3 AA1 8 LEU A 188 THR A 192 1 O TYR A 190 N GLY A 173 SHEET 4 AA1 8 GLN A 142 GLN A 147 1 N VAL A 143 O LYS A 189 SHEET 5 AA1 8 TYR A 209 LEU A 214 1 O ILE A 213 N ALA A 144 SHEET 6 AA1 8 LYS A 242 SER A 247 1 O MET A 246 N LEU A 214 SHEET 7 AA1 8 ILE A 111 GLY A 116 1 N PHE A 114 O ILE A 245 SHEET 8 AA1 8 LEU A 264 VAL A 267 1 O LEU A 265 N VAL A 113 SHEET 1 AA2 7 LEU A 339 PRO A 343 0 SHEET 2 AA2 7 ARG A 370 SER A 375 1 O ILE A 374 N TYR A 342 SHEET 3 AA2 7 ASP A 305 PHE A 309 1 N LEU A 308 O VAL A 373 SHEET 4 AA2 7 ILE A 388 ASP A 393 1 O VAL A 392 N LEU A 307 SHEET 5 AA2 7 GLY A 434 ARG A 438 1 O PHE A 437 N VAL A 391 SHEET 6 AA2 7 VAL A 274 TYR A 278 1 N TYR A 277 O ARG A 438 SHEET 7 AA2 7 VAL B 127 LEU B 132 -1 O VAL B 127 N TYR A 278 SHEET 1 AA3 2 PHE A 396 ASN A 403 0 SHEET 2 AA3 2 VAL A 408 PRO A 415 -1 O SER A 410 N VAL A 401 SHEET 1 AA4 6 VAL A 660 LYS A 663 0 SHEET 2 AA4 6 TYR A 670 THR A 672 -1 O ILE A 671 N LYS A 662 SHEET 3 AA4 6 ASP A 678 ILE A 681 -1 O VAL A 679 N TYR A 670 SHEET 4 AA4 6 TYR A 706 SER A 712 1 O ILE A 707 N LEU A 680 SHEET 5 AA4 6 TRP A 693 VAL A 700 -1 N ILE A 695 O THR A 711 SHEET 6 AA4 6 VAL A 660 LYS A 663 -1 N ALA A 661 O VAL A 694 LINK OG1 THR A 123 MG MG A1202 1555 1555 2.21 LINK O1B ADP A1201 MG MG A1202 1555 1555 1.90 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000