HEADER OXIDOREDUCTASE 10-DEC-23 8RE6 TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) R735Q VARIANT IN COMPLEX TITLE 2 WITH MN, 2-OXOGLUTARATE AND A FACTOR X DERIVED PEPTIDE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR X; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS ASPH, ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE, 2-OXOGLUTARATE, 2OG, KEYWDS 2 ALPHA-KETOGLUTARATE, SUBSTRATE ANALOGUES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRASNETT,C.HOU,P.RABE,L.BREWITZ,C.J.SCHOFIELD REVDAT 1 18-DEC-24 8RE6 0 JRNL AUTH A.BRASNETT,C.HOU,P.RABE,L.BREWITZ,C.J.SCHOFIELD JRNL TITL ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) R735Q VARIANT JRNL TITL 2 IN COMPLEX WITH MN, 2-OXOGLUTARATE AND A FACTOR X DERIVED JRNL TITL 3 PEPTIDE FRAGMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.560 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0300 - 4.6300 1.00 3199 154 0.1626 0.1899 REMARK 3 2 4.6300 - 3.6700 1.00 3056 145 0.1520 0.1522 REMARK 3 3 3.6700 - 3.2100 1.00 3025 145 0.1922 0.2091 REMARK 3 4 3.2100 - 2.9200 1.00 3002 144 0.2087 0.2343 REMARK 3 5 2.9200 - 2.7100 1.00 2975 140 0.2117 0.2223 REMARK 3 6 2.7100 - 2.5500 1.00 2979 143 0.2118 0.2647 REMARK 3 7 2.5500 - 2.4200 1.00 2963 142 0.2122 0.1992 REMARK 3 8 2.4200 - 2.3100 1.00 2971 141 0.2125 0.2452 REMARK 3 9 2.3100 - 2.2200 1.00 2949 141 0.2283 0.2690 REMARK 3 10 2.2200 - 2.1500 1.00 2930 141 0.2365 0.2872 REMARK 3 11 2.1500 - 2.0800 1.00 2932 140 0.2418 0.2855 REMARK 3 12 2.0800 - 2.0200 1.00 2950 142 0.2552 0.3195 REMARK 3 13 2.0200 - 1.9700 1.00 2944 140 0.2761 0.3098 REMARK 3 14 1.9700 - 1.9200 1.00 2947 140 0.3308 0.3713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 NULL REMARK 3 ANGLE : 0.513 4922 REMARK 3 CHIRALITY : 0.040 518 REMARK 3 PLANARITY : 0.004 646 REMARK 3 DIHEDRAL : 12.907 1352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.8618 40.6636 57.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.4161 T22: 0.2511 REMARK 3 T33: 0.4166 T12: -0.0274 REMARK 3 T13: -0.0090 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 3.2160 L22: 2.5979 REMARK 3 L33: 4.0762 L12: -1.0142 REMARK 3 L13: 0.8800 L23: 0.8045 REMARK 3 S TENSOR REMARK 3 S11: 0.2382 S12: -0.0230 S13: -0.3427 REMARK 3 S21: 0.0161 S22: -0.1239 S23: 0.3087 REMARK 3 S31: 0.2236 S32: -0.2852 S33: -0.1158 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 450 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.7703 19.8504 22.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.2623 T22: 0.2719 REMARK 3 T33: 0.2442 T12: 0.0034 REMARK 3 T13: -0.0160 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 1.5381 L22: 1.1533 REMARK 3 L33: 2.1337 L12: 0.0770 REMARK 3 L13: 1.1134 L23: 0.7246 REMARK 3 S TENSOR REMARK 3 S11: 0.0529 S12: -0.3150 S13: -0.1406 REMARK 3 S21: 0.2743 S22: 0.0737 S23: -0.1476 REMARK 3 S31: 0.2877 S32: -0.1183 S33: -0.1256 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.7049 26.3685 23.7945 REMARK 3 T TENSOR REMARK 3 T11: 0.5426 T22: 0.4491 REMARK 3 T33: 0.4505 T12: -0.1337 REMARK 3 T13: -0.0585 T23: 0.0358 REMARK 3 L TENSOR REMARK 3 L11: 5.6427 L22: 2.1668 REMARK 3 L33: 2.0464 L12: -3.1692 REMARK 3 L13: -0.4985 L23: 0.8210 REMARK 3 S TENSOR REMARK 3 S11: -0.3427 S12: 0.0066 S13: 0.9550 REMARK 3 S21: -0.2292 S22: 0.2125 S23: -0.9511 REMARK 3 S31: -1.2783 S32: 0.9876 S33: 0.1291 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.9293 26.4247 32.0299 REMARK 3 T TENSOR REMARK 3 T11: 0.4569 T22: 0.4984 REMARK 3 T33: 0.3333 T12: -0.0126 REMARK 3 T13: -0.0838 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 9.3525 L22: 6.0840 REMARK 3 L33: 4.7228 L12: 2.0547 REMARK 3 L13: 2.0350 L23: 2.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: -0.5412 S13: 0.6149 REMARK 3 S21: 0.5252 S22: -0.2996 S23: -0.1333 REMARK 3 S31: -0.5953 S32: -0.3043 S33: 0.3413 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4186 36.6983 41.1115 REMARK 3 T TENSOR REMARK 3 T11: 0.6473 T22: 0.7598 REMARK 3 T33: 0.6295 T12: 0.1980 REMARK 3 T13: -0.1341 T23: -0.1647 REMARK 3 L TENSOR REMARK 3 L11: 1.8210 L22: 0.8829 REMARK 3 L33: 3.0802 L12: 0.2141 REMARK 3 L13: 0.8111 L23: -0.2193 REMARK 3 S TENSOR REMARK 3 S11: -0.1720 S12: 0.0686 S13: -0.1011 REMARK 3 S21: -0.1604 S22: -0.0770 S23: -0.0217 REMARK 3 S31: 0.4120 S32: -0.3747 S33: 0.2430 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RE6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43909 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 61.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 1.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 300 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M NACL, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.05150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.67600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.42900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.67600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.05150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.42900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 315 REMARK 465 LYS A 316 REMARK 465 THR A 317 REMARK 465 ASP A 318 REMARK 465 ASP A 319 REMARK 465 PRO A 320 REMARK 465 GLU A 321 REMARK 465 GLN A 322 REMARK 465 LYS A 323 REMARK 465 ALA A 324 REMARK 465 LYS A 325 REMARK 465 VAL A 326 REMARK 465 LYS A 327 REMARK 465 LYS A 328 REMARK 465 LYS A 329 REMARK 465 LYS A 330 REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLN B 98 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 LYS A 336 CE NZ REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 ILE A 357 CG1 CG2 CD1 REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 LYS A 370 CE NZ REMARK 470 ARG A 437 CZ NH1 NH2 REMARK 470 GLN A 448 CD OE1 NE2 REMARK 470 GLU A 479 CG CD OE1 OE2 REMARK 470 ASN A 486 CG OD1 ND2 REMARK 470 LYS A 503 CE NZ REMARK 470 LYS A 512 NZ REMARK 470 LYS A 541 CG CD CE NZ REMARK 470 GLU A 542 OE1 OE2 REMARK 470 LYS A 545 CD CE NZ REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 642 CE NZ REMARK 470 LYS A 697 CD CE NZ REMARK 470 GLU A 698 CD OE1 OE2 REMARK 470 LYS A 715 NZ REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 653 O HOH A 901 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 608 50.32 -148.91 REMARK 500 ALA A 705 -123.91 57.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 801 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 85.6 REMARK 620 3 AKG A 802 O5 98.7 103.6 REMARK 620 4 AKG A 802 O2 175.3 95.6 76.6 REMARK 620 5 HOH A 970 O 89.1 174.3 75.3 89.6 REMARK 620 6 HOH A 997 O 96.7 88.4 161.1 87.8 94.2 REMARK 620 N 1 2 3 4 5 DBREF 8RE6 A 315 758 UNP Q12797 ASPH_HUMAN 315 758 DBREF 8RE6 B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 8RE6 GLN A 735 UNP Q12797 ARG 735 ENGINEERED MUTATION SEQADV 8RE6 SER B 90 UNP P00742 CYS 90 ENGINEERED MUTATION SEQADV 8RE6 SER B 95 UNP P00742 CYS 95 ENGINEERED MUTATION SEQADV 8RE6 SER B 112 UNP P00742 CYS 112 ENGINEERED MUTATION SEQADV 8RE6 SER B 121 UNP P00742 CYS 121 ENGINEERED MUTATION SEQRES 1 A 444 ARG LYS THR ASP ASP PRO GLU GLN LYS ALA LYS VAL LYS SEQRES 2 A 444 LYS LYS LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR SEQRES 3 A 444 ILE LYS ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS SEQRES 4 A 444 ARG GLY LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU SEQRES 5 A 444 LEU VAL ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR SEQRES 6 A 444 GLY LYS ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG SEQRES 7 A 444 ARG SER ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR SEQRES 8 A 444 GLN GLU VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU SEQRES 9 A 444 LEU LYS LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN SEQRES 10 A 444 PHE LEU GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN SEQRES 11 A 444 ARG LEU VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS SEQRES 12 A 444 ASN ASP LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN SEQRES 13 A 444 ASP ASN ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL SEQRES 14 A 444 THR PRO ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE SEQRES 15 A 444 ILE LEU LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO SEQRES 16 A 444 TYR LEU LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR SEQRES 17 A 444 ASP ASP GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET SEQRES 18 A 444 GLN ARG VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU SEQRES 19 A 444 LEU GLY HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN SEQRES 20 A 444 ARG SER LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO SEQRES 21 A 444 TRP TRP THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL SEQRES 22 A 444 LYS SER LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU SEQRES 23 A 444 GLY LEU ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU SEQRES 24 A 444 PRO GLU ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER SEQRES 25 A 444 GLN PHE THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN SEQRES 26 A 444 ALA CYS LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU SEQRES 27 A 444 LYS PHE PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE SEQRES 28 A 444 LYS TYR SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO SEQRES 29 A 444 HIS THR GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU SEQRES 30 A 444 GLY LEU VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS SEQRES 31 A 444 ALA ASN GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU SEQRES 32 A 444 ILE PHE ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP SEQRES 33 A 444 ALA SER SER PHE GLN LEU ILE PHE ILE VAL ASP VAL TRP SEQRES 34 A 444 HIS PRO GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO SEQRES 35 A 444 ALA ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET MN A 801 1 HET AKG A 802 10 HETNAM MN MANGANESE (II) ION HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 MN MN 2+ FORMUL 4 AKG C5 H6 O5 FORMUL 5 HOH *333(H2 O) HELIX 1 AA1 ASN A 335 THR A 340 1 6 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 LEU A 411 1 18 HELIX 6 AA6 PRO A 415 GLY A 434 1 20 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 GLY A 468 1 16 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 GLY A 539 1 16 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 LYS A 642 1 6 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA1 7 GLN A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA2 7 GLN A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O GLN A 729 N THR A 674 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.04 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.03 LINK NE2 HIS A 679 MN MN A 801 1555 1555 2.26 LINK NE2 HIS A 725 MN MN A 801 1555 1555 2.12 LINK MN MN A 801 O5 AKG A 802 1555 1555 2.25 LINK MN MN A 801 O2 AKG A 802 1555 1555 2.09 LINK MN MN A 801 O HOH A 970 1555 1555 2.15 LINK MN MN A 801 O HOH A 997 1555 1555 2.04 CRYST1 50.103 90.858 123.352 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008107 0.00000