HEADER OXIDOREDUCTASE 10-DEC-23 8RE8 TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) R688Q VARIANT IN COMPLEX TITLE 2 WITH MN, (3R)-METHYL-2-OXOGLUTARATE AND A FACTOR X DERIVED PEPTIDE TITLE 3 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR X; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS ASPH, ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE, 2-OXOGLUTARATE, 2OG, KEYWDS 2 ALPHA-KETOGLUTARATE, SUBSTRATE ANALOGUES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRASNETT,C.HOU,P.RABE,L.BREWITZ,C.J.SCHOFIELD REVDAT 1 18-DEC-24 8RE8 0 JRNL AUTH A.BRASNETT,C.HOU,P.RABE,L.BREWITZ,C.J.SCHOFIELD JRNL TITL ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) R688Q VARIANT JRNL TITL 2 IN COMPLEX WITH MN, (3R)-METHYL-2-OXOGLUTARATE AND A FACTOR JRNL TITL 3 X DERIVED PEPTIDE FRAGMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 47122 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8500 - 4.4500 1.00 3458 141 0.1600 0.1633 REMARK 3 2 4.4500 - 3.5300 1.00 3274 172 0.1407 0.1690 REMARK 3 3 3.5300 - 3.0900 1.00 3244 153 0.1873 0.2318 REMARK 3 4 3.0900 - 2.8100 1.00 3227 146 0.1931 0.2508 REMARK 3 5 2.8100 - 2.6000 1.00 3238 122 0.1975 0.2242 REMARK 3 6 2.6000 - 2.4500 1.00 3225 149 0.1820 0.2196 REMARK 3 7 2.4500 - 2.3300 1.00 3205 112 0.1736 0.2036 REMARK 3 8 2.3300 - 2.2300 1.00 3223 136 0.1800 0.2415 REMARK 3 9 2.2300 - 2.1400 1.00 3209 121 0.1860 0.2192 REMARK 3 10 2.1400 - 2.0700 1.00 3171 144 0.1952 0.2525 REMARK 3 11 2.0700 - 2.0000 1.00 3171 150 0.2159 0.2499 REMARK 3 12 2.0000 - 1.9500 1.00 3173 139 0.2271 0.2556 REMARK 3 13 1.9500 - 1.8900 1.00 3167 150 0.2539 0.2985 REMARK 3 14 1.8900 - 1.8500 0.99 3173 129 0.2899 0.3624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3706 REMARK 3 ANGLE : 0.614 5011 REMARK 3 CHIRALITY : 0.043 527 REMARK 3 PLANARITY : 0.005 659 REMARK 3 DIHEDRAL : 13.962 1379 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 410 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7635 -4.7904 -0.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.2908 T22: 0.1494 REMARK 3 T33: 0.3324 T12: 0.0155 REMARK 3 T13: 0.0860 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 4.1871 L22: 2.0729 REMARK 3 L33: 8.8192 L12: -0.2702 REMARK 3 L13: 1.2840 L23: -1.0941 REMARK 3 S TENSOR REMARK 3 S11: 0.2582 S12: 0.1692 S13: 0.1434 REMARK 3 S21: -0.2520 S22: -0.1147 S23: -0.2579 REMARK 3 S31: 0.0207 S32: 0.2869 S33: -0.1323 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 411 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5590 -10.1614 13.0851 REMARK 3 T TENSOR REMARK 3 T11: 0.2873 T22: 0.2255 REMARK 3 T33: 0.2680 T12: -0.0400 REMARK 3 T13: 0.0155 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 4.2844 L22: 3.7843 REMARK 3 L33: 8.0421 L12: 1.4182 REMARK 3 L13: -2.0714 L23: -2.9529 REMARK 3 S TENSOR REMARK 3 S11: 0.3401 S12: -0.1659 S13: 0.1909 REMARK 3 S21: 0.2060 S22: -0.0216 S23: 0.1033 REMARK 3 S31: -0.1162 S32: -0.5545 S33: -0.3057 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 470 THROUGH 572 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4146 -29.9460 26.8140 REMARK 3 T TENSOR REMARK 3 T11: 0.3720 T22: 0.3259 REMARK 3 T33: 0.2842 T12: -0.0996 REMARK 3 T13: -0.0699 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.5598 L22: 0.9963 REMARK 3 L33: 3.3827 L12: -0.5028 REMARK 3 L13: 1.9470 L23: -0.8754 REMARK 3 S TENSOR REMARK 3 S11: 0.2266 S12: 0.2697 S13: -0.3814 REMARK 3 S21: -0.1915 S22: 0.1755 S23: 0.1988 REMARK 3 S31: 0.4436 S32: 0.0558 S33: -0.4146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 573 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1445 -23.6400 48.6834 REMARK 3 T TENSOR REMARK 3 T11: 0.1979 T22: 0.2136 REMARK 3 T33: 0.2137 T12: 0.0091 REMARK 3 T13: 0.0019 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.5945 L22: 1.2709 REMARK 3 L33: 2.1221 L12: 0.2379 REMARK 3 L13: 1.1137 L23: 0.1584 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: 0.2517 S13: -0.0626 REMARK 3 S21: -0.1046 S22: 0.0402 S23: -0.0300 REMARK 3 S31: 0.0472 S32: 0.1504 S33: -0.0430 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6778 -18.8344 38.2903 REMARK 3 T TENSOR REMARK 3 T11: 0.5013 T22: 0.5364 REMARK 3 T33: 0.4449 T12: 0.0244 REMARK 3 T13: -0.0676 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.8042 L22: 8.0929 REMARK 3 L33: 7.4758 L12: -4.5969 REMARK 3 L13: 3.3767 L23: -4.2675 REMARK 3 S TENSOR REMARK 3 S11: 0.2100 S12: -0.0610 S13: 0.1151 REMARK 3 S21: 0.1956 S22: -0.3376 S23: 0.3057 REMARK 3 S31: -0.6623 S32: -0.1379 S33: 0.1064 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5930 -21.5396 31.3710 REMARK 3 T TENSOR REMARK 3 T11: 0.3308 T22: 0.3987 REMARK 3 T33: 0.2811 T12: -0.0254 REMARK 3 T13: -0.0480 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 8.7598 L22: 8.4408 REMARK 3 L33: 5.1922 L12: -3.7633 REMARK 3 L13: 5.2974 L23: -5.9609 REMARK 3 S TENSOR REMARK 3 S11: 0.4259 S12: 0.3889 S13: -0.1000 REMARK 3 S21: -0.6355 S22: 0.2154 S23: 0.2869 REMARK 3 S31: 0.6585 S32: -0.1158 S33: -0.5764 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6734 -15.7402 28.4254 REMARK 3 T TENSOR REMARK 3 T11: 0.6428 T22: 0.6431 REMARK 3 T33: 0.3753 T12: -0.1244 REMARK 3 T13: -0.0986 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 5.3395 L22: 1.9566 REMARK 3 L33: 2.0436 L12: -1.0371 REMARK 3 L13: -0.6164 L23: 1.9667 REMARK 3 S TENSOR REMARK 3 S11: -0.1751 S12: 0.0620 S13: 0.6569 REMARK 3 S21: -0.3204 S22: -0.7749 S23: -0.4388 REMARK 3 S31: -0.6447 S32: 0.3949 S33: 0.9537 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3610 -9.5737 19.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.5901 T22: 0.6160 REMARK 3 T33: 0.5131 T12: -0.1861 REMARK 3 T13: -0.1706 T23: 0.1198 REMARK 3 L TENSOR REMARK 3 L11: 2.8296 L22: 6.7039 REMARK 3 L33: 4.1830 L12: -2.5265 REMARK 3 L13: 0.9194 L23: 2.5650 REMARK 3 S TENSOR REMARK 3 S11: -0.1616 S12: -0.8066 S13: 0.3770 REMARK 3 S21: 0.6092 S22: -0.0094 S23: -0.9494 REMARK 3 S31: 0.1598 S32: 1.5033 S33: 0.1860 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47230 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 1.95400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 300 UM LENGTH REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M NACL, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.30200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.98150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.99900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.98150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.30200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.99900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 315 REMARK 465 LYS A 316 REMARK 465 THR A 317 REMARK 465 ASP A 318 REMARK 465 ASP A 319 REMARK 465 PRO A 320 REMARK 465 GLU A 321 REMARK 465 GLN A 322 REMARK 465 LYS A 323 REMARK 465 ALA A 324 REMARK 465 LYS A 325 REMARK 465 VAL A 326 REMARK 465 LYS A 327 REMARK 465 LYS A 328 REMARK 465 LYS A 329 REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLN B 98 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 353 CD CE NZ REMARK 470 LYS A 356 CD CE NZ REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 541 CG CD CE NZ REMARK 470 GLU A 542 CD OE1 OE2 REMARK 470 LYS A 545 CG CD CE NZ REMARK 470 GLU A 548 CG CD OE1 OE2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 609 CE NZ REMARK 470 ARG A 635 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 653 CG CD CE NZ REMARK 470 LYS A 697 CG CD CE NZ REMARK 470 GLN A 750 CG CD OE1 NE2 REMARK 470 ARG A 753 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1038 O HOH A 1127 2.13 REMARK 500 O HOH A 1119 O HOH A 1180 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 583 47.84 -91.04 REMARK 500 ALA A 608 51.47 -147.85 REMARK 500 ALA A 705 -122.18 52.17 REMARK 500 LYS B 102 -74.59 -96.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG A 803 REMARK 610 PEG A 804 REMARK 610 PEG A 805 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 807 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 84.8 REMARK 620 3 Q1Z A 801 O01 89.5 104.5 REMARK 620 4 Q1Z A 801 O02 164.1 91.0 76.7 REMARK 620 5 ASP B 103 OD2 109.5 165.5 78.7 75.8 REMARK 620 6 HOH B 203 O 95.3 88.9 166.2 100.0 87.5 REMARK 620 N 1 2 3 4 5 DBREF 8RE8 A 315 758 UNP Q12797 ASPH_HUMAN 315 758 DBREF 8RE8 B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 8RE8 GLN A 688 UNP Q12797 ARG 688 ENGINEERED MUTATION SEQADV 8RE8 SER B 90 UNP P00742 CYS 90 ENGINEERED MUTATION SEQADV 8RE8 SER B 95 UNP P00742 CYS 95 ENGINEERED MUTATION SEQADV 8RE8 SER B 112 UNP P00742 CYS 112 ENGINEERED MUTATION SEQADV 8RE8 SER B 121 UNP P00742 CYS 121 ENGINEERED MUTATION SEQRES 1 A 444 ARG LYS THR ASP ASP PRO GLU GLN LYS ALA LYS VAL LYS SEQRES 2 A 444 LYS LYS LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR SEQRES 3 A 444 ILE LYS ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS SEQRES 4 A 444 ARG GLY LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU SEQRES 5 A 444 LEU VAL ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR SEQRES 6 A 444 GLY LYS ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG SEQRES 7 A 444 ARG SER ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR SEQRES 8 A 444 GLN GLU VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU SEQRES 9 A 444 LEU LYS LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN SEQRES 10 A 444 PHE LEU GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN SEQRES 11 A 444 ARG LEU VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS SEQRES 12 A 444 ASN ASP LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN SEQRES 13 A 444 ASP ASN ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL SEQRES 14 A 444 THR PRO ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE SEQRES 15 A 444 ILE LEU LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO SEQRES 16 A 444 TYR LEU LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR SEQRES 17 A 444 ASP ASP GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET SEQRES 18 A 444 GLN ARG VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU SEQRES 19 A 444 LEU GLY HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN SEQRES 20 A 444 ARG SER LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO SEQRES 21 A 444 TRP TRP THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL SEQRES 22 A 444 LYS SER LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU SEQRES 23 A 444 GLY LEU ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU SEQRES 24 A 444 PRO GLU ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER SEQRES 25 A 444 GLN PHE THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN SEQRES 26 A 444 ALA CYS LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU SEQRES 27 A 444 LYS PHE PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE SEQRES 28 A 444 LYS TYR SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO SEQRES 29 A 444 HIS THR GLY PRO THR ASN CYS ARG LEU GLN MET HIS LEU SEQRES 30 A 444 GLY LEU VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS SEQRES 31 A 444 ALA ASN GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU SEQRES 32 A 444 ILE PHE ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP SEQRES 33 A 444 ALA SER SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP SEQRES 34 A 444 HIS PRO GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO SEQRES 35 A 444 ALA ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET Q1Z A 801 11 HET PEG A 802 7 HET PEG A 803 5 HET PEG A 804 5 HET PEG A 805 4 HET PEG A 806 7 HET MN A 807 1 HET CL A 808 1 HETNAM Q1Z (3~{R})-3-METHYL-2-OXIDANYLIDENE-PENTANEDIOIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION FORMUL 3 Q1Z C6 H8 O5 FORMUL 4 PEG 5(C4 H10 O3) FORMUL 9 MN MN 2+ FORMUL 10 CL CL 1- FORMUL 11 HOH *314(H2 O) HELIX 1 AA1 ASN A 335 ILE A 341 1 7 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 LEU A 411 1 18 HELIX 6 AA6 PRO A 415 LEU A 433 1 19 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 ILE A 467 1 15 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 VAL A 538 1 15 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 ALA A 644 1 8 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA1 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA2 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.04 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.04 LINK NE2 HIS A 679 MN MN A 807 1555 1555 2.30 LINK NE2 HIS A 725 MN MN A 807 1555 1555 2.18 LINK O01 Q1Z A 801 MN MN A 807 1555 1555 2.21 LINK O02 Q1Z A 801 MN MN A 807 1555 1555 2.26 LINK MN MN A 807 OD2 ASP B 103 1555 1555 2.66 LINK MN MN A 807 O HOH B 203 1555 1555 2.18 CRYST1 50.604 85.998 123.963 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019761 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008067 0.00000