HEADER OXIDOREDUCTASE 10-DEC-23 8RE9 TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) IN COMPLEX WITH MN, 2- TITLE 2 OXOGLUTARATE AND A FACTOR X DERIVED PEPTIDE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 5 ASPARTATE BETA-DIOXYGENASE; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: COAGULATION FACTOR X; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR; COMPND 12 EC: 3.4.21.6; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: F10; SOURCE 14 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS ASPH, ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE, 2-OXOGLUTARATE, 2OG, KEYWDS 2 ALPHA-KETOGLUTARATE, SUBSTRATE ANALOGUES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRASNETT,C.HOU,P.RABE,L.BREWITZ,C.J.SCHOFIELD REVDAT 1 18-DEC-24 8RE9 0 JRNL AUTH A.BRASNETT,C.HOU,P.RABE,L.BREWITZ,C.J.SCHOFIELD JRNL TITL ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH) IN COMPLEX WITH JRNL TITL 2 MN, 2-OXOGLUTARATE AND A FACTOR X DERIVED PEPTIDE FRAGMENT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1000 - 4.6400 1.00 2989 151 0.1520 0.1862 REMARK 3 2 4.6400 - 3.6800 1.00 2838 137 0.1350 0.1609 REMARK 3 3 3.6800 - 3.2200 1.00 2833 130 0.1614 0.2003 REMARK 3 4 3.2200 - 2.9200 1.00 2800 123 0.1779 0.2022 REMARK 3 5 2.9200 - 2.7100 1.00 2802 121 0.1794 0.2144 REMARK 3 6 2.7100 - 2.5500 1.00 2761 149 0.1656 0.1988 REMARK 3 7 2.5500 - 2.4300 1.00 2780 131 0.1597 0.2094 REMARK 3 8 2.4300 - 2.3200 1.00 2765 134 0.1608 0.1934 REMARK 3 9 2.3200 - 2.2300 1.00 2732 152 0.1548 0.1931 REMARK 3 10 2.2300 - 2.1500 1.00 2730 144 0.1602 0.1870 REMARK 3 11 2.1500 - 2.0900 1.00 2762 124 0.1681 0.2205 REMARK 3 12 2.0900 - 2.0300 1.00 2756 130 0.1809 0.2261 REMARK 3 13 2.0300 - 1.9700 1.00 2733 162 0.1768 0.1966 REMARK 3 14 1.9700 - 1.9300 1.00 2723 128 0.1916 0.2275 REMARK 3 15 1.9300 - 1.8800 1.00 2757 133 0.2162 0.2470 REMARK 3 16 1.8800 - 1.8400 0.98 2629 141 0.2653 0.2851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3712 REMARK 3 ANGLE : 0.900 5002 REMARK 3 CHIRALITY : 0.062 523 REMARK 3 PLANARITY : 0.009 652 REMARK 3 DIHEDRAL : 13.988 1393 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3715 -5.0659 -6.6308 REMARK 3 T TENSOR REMARK 3 T11: 0.3744 T22: 0.2610 REMARK 3 T33: 0.2860 T12: 0.0414 REMARK 3 T13: 0.0935 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 5.0548 L22: 3.4575 REMARK 3 L33: 4.6831 L12: -1.0776 REMARK 3 L13: 0.8752 L23: -0.1144 REMARK 3 S TENSOR REMARK 3 S11: 0.1397 S12: 0.4323 S13: 0.3294 REMARK 3 S21: -0.4369 S22: -0.0950 S23: -0.4062 REMARK 3 S31: -0.2884 S32: 0.0502 S33: -0.0272 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 538 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7202 -16.0603 16.9885 REMARK 3 T TENSOR REMARK 3 T11: 0.2396 T22: 0.2618 REMARK 3 T33: 0.2424 T12: -0.0333 REMARK 3 T13: -0.0266 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.7485 L22: 1.8871 REMARK 3 L33: 2.1809 L12: 0.5642 REMARK 3 L13: -0.9944 L23: -1.4985 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.0053 S13: 0.0531 REMARK 3 S21: 0.0108 S22: 0.0331 S23: 0.0308 REMARK 3 S31: -0.0718 S32: -0.1898 S33: -0.1223 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 539 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.3662 -25.3514 45.3069 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.1945 REMARK 3 T33: 0.2297 T12: 0.0167 REMARK 3 T13: 0.0072 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.3249 L22: 0.8988 REMARK 3 L33: 1.7369 L12: 0.0536 REMARK 3 L13: 0.5933 L23: 0.0557 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 0.1797 S13: -0.0679 REMARK 3 S21: -0.0567 S22: 0.0137 S23: -0.0425 REMARK 3 S31: 0.0592 S32: 0.1040 S33: -0.0269 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0259 -19.6408 38.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.2882 T22: 0.3391 REMARK 3 T33: 0.3356 T12: -0.0072 REMARK 3 T13: -0.0325 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 1.9851 L22: 2.0002 REMARK 3 L33: 8.7825 L12: -3.0027 REMARK 3 L13: 3.7943 L23: -5.0764 REMARK 3 S TENSOR REMARK 3 S11: -0.0998 S12: 0.3860 S13: 0.3684 REMARK 3 S21: -0.0164 S22: -0.0657 S23: 0.2474 REMARK 3 S31: -0.4468 S32: -0.2966 S33: 0.0939 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4857 -18.8117 29.7016 REMARK 3 T TENSOR REMARK 3 T11: 0.2687 T22: 0.2822 REMARK 3 T33: 0.2087 T12: -0.0292 REMARK 3 T13: -0.0218 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 4.4710 L22: 3.0968 REMARK 3 L33: 7.2192 L12: -1.1263 REMARK 3 L13: 1.8678 L23: -1.3949 REMARK 3 S TENSOR REMARK 3 S11: -0.0673 S12: 0.2307 S13: 0.2184 REMARK 3 S21: -0.1770 S22: -0.0834 S23: -0.0083 REMARK 3 S31: -0.4937 S32: 0.0666 S33: 0.1383 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5375 -9.3799 19.5126 REMARK 3 T TENSOR REMARK 3 T11: 0.3732 T22: 0.3635 REMARK 3 T33: 0.6124 T12: -0.1044 REMARK 3 T13: -0.1176 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 8.9040 L22: 0.4672 REMARK 3 L33: 8.4172 L12: 0.0985 REMARK 3 L13: -7.7424 L23: -0.0932 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: -0.2715 S13: 0.1365 REMARK 3 S21: 0.1035 S22: -0.1234 S23: -0.2076 REMARK 3 S31: -0.0378 S32: 0.3784 S33: 0.0814 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135259. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 49.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, PH 7.5 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5 20 % V/V PEG SMEAR REMARK 280 HIGH (BCS SCREEN), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.84000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.84000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 315 REMARK 465 LYS A 316 REMARK 465 THR A 317 REMARK 465 ASP A 318 REMARK 465 ASP A 319 REMARK 465 PRO A 320 REMARK 465 GLU A 321 REMARK 465 GLN A 322 REMARK 465 LYS A 323 REMARK 465 ALA A 324 REMARK 465 LYS A 325 REMARK 465 VAL A 326 REMARK 465 LYS A 327 REMARK 465 LYS A 328 REMARK 465 LYS A 329 REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLN B 98 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 336 CD CE NZ REMARK 470 LYS A 353 CE NZ REMARK 470 LYS A 356 NZ REMARK 470 ARG A 393 CZ NH1 NH2 REMARK 470 ARG A 437 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 448 CD OE1 NE2 REMARK 470 LYS A 475 NZ REMARK 470 GLU A 479 OE1 OE2 REMARK 470 LYS A 541 CG CD CE NZ REMARK 470 LYS A 545 CE NZ REMARK 470 GLU A 548 CG CD OE1 OE2 REMARK 470 LEU A 549 CD1 CD2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 571 NZ REMARK 470 LYS A 579 CD CE NZ REMARK 470 LYS A 607 CE NZ REMARK 470 ARG A 635 CZ NH1 NH2 REMARK 470 LYS A 697 CD CE NZ REMARK 470 GLU A 698 OE1 OE2 REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1129 O HOH A 1218 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 583 47.47 -87.13 REMARK 500 ALA A 608 50.16 -149.54 REMARK 500 ALA A 705 -127.91 55.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 802 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 87.3 REMARK 620 3 AKG A 801 O1 169.7 97.2 REMARK 620 4 AKG A 801 O5 93.2 101.1 76.8 REMARK 620 5 ASP B 103 OD2 94.2 173.2 82.5 85.5 REMARK 620 6 HOH B 202 O 94.1 90.4 95.1 166.7 82.8 REMARK 620 N 1 2 3 4 5 DBREF 8RE9 A 315 758 UNP Q12797 ASPH_HUMAN 315 758 DBREF 8RE9 B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 8RE9 SER B 90 UNP P00742 CYS 90 ENGINEERED MUTATION SEQADV 8RE9 SER B 95 UNP P00742 CYS 95 ENGINEERED MUTATION SEQADV 8RE9 SER B 112 UNP P00742 CYS 112 ENGINEERED MUTATION SEQADV 8RE9 SER B 121 UNP P00742 CYS 121 ENGINEERED MUTATION SEQRES 1 A 444 ARG LYS THR ASP ASP PRO GLU GLN LYS ALA LYS VAL LYS SEQRES 2 A 444 LYS LYS LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR SEQRES 3 A 444 ILE LYS ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS SEQRES 4 A 444 ARG GLY LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU SEQRES 5 A 444 LEU VAL ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR SEQRES 6 A 444 GLY LYS ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG SEQRES 7 A 444 ARG SER ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR SEQRES 8 A 444 GLN GLU VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU SEQRES 9 A 444 LEU LYS LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN SEQRES 10 A 444 PHE LEU GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN SEQRES 11 A 444 ARG LEU VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS SEQRES 12 A 444 ASN ASP LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN SEQRES 13 A 444 ASP ASN ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL SEQRES 14 A 444 THR PRO ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE SEQRES 15 A 444 ILE LEU LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO SEQRES 16 A 444 TYR LEU LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR SEQRES 17 A 444 ASP ASP GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET SEQRES 18 A 444 GLN ARG VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU SEQRES 19 A 444 LEU GLY HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN SEQRES 20 A 444 ARG SER LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO SEQRES 21 A 444 TRP TRP THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL SEQRES 22 A 444 LYS SER LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU SEQRES 23 A 444 GLY LEU ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU SEQRES 24 A 444 PRO GLU ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER SEQRES 25 A 444 GLN PHE THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN SEQRES 26 A 444 ALA CYS LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU SEQRES 27 A 444 LYS PHE PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE SEQRES 28 A 444 LYS TYR SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO SEQRES 29 A 444 HIS THR GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU SEQRES 30 A 444 GLY LEU VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS SEQRES 31 A 444 ALA ASN GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU SEQRES 32 A 444 ILE PHE ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP SEQRES 33 A 444 ALA SER SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP SEQRES 34 A 444 HIS PRO GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO SEQRES 35 A 444 ALA ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET AKG A 801 10 HET MN A 802 1 HET PEG A 803 7 HET PEG A 804 7 HET PEG A 805 7 HET PEG A 806 7 HET PEG A 807 7 HET PEG A 808 7 HETNAM AKG 2-OXOGLUTARIC ACID HETNAM MN MANGANESE (II) ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 AKG C5 H6 O5 FORMUL 4 MN MN 2+ FORMUL 5 PEG 6(C4 H10 O3) FORMUL 11 HOH *368(H2 O) HELIX 1 AA1 ASN A 335 ILE A 341 1 7 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 LEU A 411 1 18 HELIX 6 AA6 PRO A 415 LEU A 433 1 19 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 GLY A 468 1 16 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 GLY A 539 1 16 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 ALA A 644 1 8 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA1 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA2 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O GLU A 707 N CYS A 704 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.06 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.07 LINK NE2 HIS A 679 MN MN A 802 1555 1555 2.33 LINK NE2 HIS A 725 MN MN A 802 1555 1555 2.22 LINK O1 AKG A 801 MN MN A 802 1555 1555 2.13 LINK O5 AKG A 801 MN MN A 802 1555 1555 2.18 LINK MN MN A 802 OD2AASP B 103 1555 1555 2.58 LINK MN MN A 802 O HOH B 202 1555 1555 2.12 CRYST1 49.680 86.190 123.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008107 0.00000