HEADER DNA BINDING PROTEIN 12-DEC-23 8REV TITLE STRUCTURE OF XPD STALLED AT A Y-FORK DNA CONTAINING A INTERSTRAND TITLE 2 CROSSLINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT DNA HELICASE CHL1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT DNA HELICASE CHL1,CHROMOSOME LOSS PROTEIN 1, COMPND 5 GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPD; COMPND 6 EC: 3.6.4.12; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH; COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (47-MER); COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: DNA (46-MER); COMPND 18 CHAIN: B; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 209285; SOURCE 4 GENE: CTHT_0002930; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: THERMOCHAETOIDES THERMOPHILA; SOURCE 9 ORGANISM_TAXID: 209285; SOURCE 10 GENE: CTHT_0002690; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_TAXID: 9606 KEYWDS DAMAGED DNA, HELICASE, XPD, NER, DNA REPAIR, INTERSTRAND CROSSLINK, KEYWDS 2 DNA BINDING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.KUPER,T.HOVE,C.KISKER REVDAT 3 12-JUN-24 8REV 1 JRNL REVDAT 2 05-JUN-24 8REV 1 JRNL REVDAT 1 29-MAY-24 8REV 0 JRNL AUTH J.KUPER,T.HOVE,S.MAIDL,H.NEITZ,F.SAUER,M.KEMPF,T.SCHROEDER, JRNL AUTH 2 E.GREITER,C.HOBARTNER,C.KISKER JRNL TITL XPD STALLED ON CROSS-LINKED DNA PROVIDES INSIGHT INTO DAMAGE JRNL TITL 2 VERIFICATION. JRNL REF NAT.STRUCT.MOL.BIOL. 2024 JRNL REFN ESSN 1545-9985 JRNL PMID 38806694 JRNL DOI 10.1038/S41594-024-01323-5 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX, PHENIX, REFMAC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 237064 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8REV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135292. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : XPD-P44 COMPLEX BOUND TO DNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4970.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 275 REMARK 465 ASP A 276 REMARK 465 GLN A 277 REMARK 465 GLN A 278 REMARK 465 LYS A 279 REMARK 465 LEU A 280 REMARK 465 GLN A 281 REMARK 465 ASP A 282 REMARK 465 GLU A 283 REMARK 465 TYR A 284 REMARK 465 GLU A 285 REMARK 465 LYS A 286 REMARK 465 LEU A 287 REMARK 465 VAL A 288 REMARK 465 GLU A 289 REMARK 465 GLY A 290 REMARK 465 LEU A 291 REMARK 465 ARG A 292 REMARK 465 GLY A 293 REMARK 465 ASN A 294 REMARK 465 ASP A 295 REMARK 465 ASP A 296 REMARK 465 GLY A 297 REMARK 465 THR A 298 REMARK 465 ARG A 299 REMARK 465 GLU A 300 REMARK 465 ASP A 301 REMARK 465 SER A 302 REMARK 465 PHE A 303 REMARK 465 MET A 304 REMARK 465 THR A 305 REMARK 465 SER A 306 REMARK 465 PRO A 307 REMARK 465 VAL A 308 REMARK 465 LEU A 309 REMARK 465 PRO A 310 REMARK 465 GLN A 311 REMARK 465 ASP A 312 REMARK 465 LEU A 313 REMARK 465 LEU A 314 REMARK 465 LYS A 315 REMARK 465 GLU A 316 REMARK 465 ALA A 317 REMARK 465 VAL A 318 REMARK 465 PRO A 319 REMARK 465 GLU A 755 REMARK 465 LEU A 756 REMARK 465 GLU A 757 REMARK 465 ALA A 758 REMARK 465 GLN A 759 REMARK 465 ARG A 760 REMARK 465 GLU A 761 REMARK 465 LYS A 762 REMARK 465 GLU A 763 REMARK 465 SER A 764 REMARK 465 ALA A 765 REMARK 465 PRO A 766 REMARK 465 ALA A 767 REMARK 465 VAL A 768 REMARK 465 GLU A 769 REMARK 465 ARG A 770 REMARK 465 PRO A 771 REMARK 465 ALA A 772 REMARK 465 ASP A 773 REMARK 465 GLN A 774 REMARK 465 GLY A 775 REMARK 465 ARG A 776 REMARK 465 GLU A 777 REMARK 465 SER A 778 REMARK 465 ASP A 779 REMARK 465 TYR A 780 REMARK 465 GLU A 781 REMARK 465 VAL A 782 REMARK 465 ASP A 783 REMARK 465 GLU A 784 REMARK 465 GLU A 785 REMARK 465 GLU A 786 REMARK 465 GLU A 787 REMARK 465 ARG A 788 REMARK 465 GLU A 789 REMARK 465 MET A 790 REMARK 465 MET A 791 REMARK 465 ALA A 792 REMARK 465 LEU A 793 REMARK 465 ASP A 794 REMARK 465 VAL A 795 REMARK 465 GLY A 796 REMARK 465 ASN A 797 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ASP D 3 REMARK 465 SER D 4 REMARK 465 ASP D 5 REMARK 465 GLY D 6 REMARK 465 GLU D 7 REMARK 465 TYR D 8 REMARK 465 VAL D 9 REMARK 465 GLU D 10 REMARK 465 ASP D 11 REMARK 465 LEU D 12 REMARK 465 SER D 13 REMARK 465 ASP D 14 REMARK 465 ASP D 15 REMARK 465 GLU D 16 REMARK 465 LEU D 17 REMARK 465 HIS D 18 REMARK 465 ASP D 19 REMARK 465 HIS D 20 REMARK 465 ARG D 21 REMARK 465 PRO D 22 REMARK 465 ALA D 23 REMARK 465 GLU D 24 REMARK 465 ALA D 25 REMARK 465 GLY D 26 REMARK 465 PRO D 27 REMARK 465 HIS D 28 REMARK 465 GLY D 29 REMARK 465 ALA D 30 REMARK 465 ARG D 31 REMARK 465 SER D 32 REMARK 465 LYS D 33 REMARK 465 ALA D 34 REMARK 465 GLY D 35 REMARK 465 ALA D 36 REMARK 465 GLY D 37 REMARK 465 LYS D 38 REMARK 465 LYS D 39 REMARK 465 ARG D 40 REMARK 465 ASP D 41 REMARK 465 GLY D 42 REMARK 465 LYS D 43 REMARK 465 LYS D 44 REMARK 465 GLY D 45 REMARK 465 LYS D 46 REMARK 465 LYS D 47 REMARK 465 GLY D 48 REMARK 465 SER D 49 REMARK 465 SER D 50 REMARK 465 ARG D 51 REMARK 465 HIS D 52 REMARK 465 THR D 53 REMARK 465 LYS D 54 REMARK 465 ALA D 55 REMARK 465 ALA D 56 REMARK 465 TRP D 57 REMARK 465 GLU D 58 REMARK 465 ASP D 59 REMARK 465 ILE D 60 REMARK 465 GLN D 61 REMARK 465 ARG D 62 REMARK 465 SER D 63 REMARK 465 TRP D 64 REMARK 465 GLU D 65 REMARK 465 ASN D 66 REMARK 465 VAL D 67 REMARK 465 VAL D 68 REMARK 465 GLU D 69 REMARK 465 THR D 70 REMARK 465 GLU D 71 REMARK 465 ASP D 72 REMARK 465 GLY D 73 REMARK 465 SER D 74 REMARK 465 ILE D 75 REMARK 465 THR D 76 REMARK 465 ILE D 77 REMARK 465 GLU D 78 REMARK 465 ALA D 79 REMARK 465 LEU D 80 REMARK 465 ILE D 81 REMARK 465 GLU D 82 REMARK 465 ALA D 83 REMARK 465 GLU D 84 REMARK 465 LYS D 85 REMARK 465 ARG D 86 REMARK 465 ARG D 87 REMARK 465 ARG D 88 REMARK 465 LEU D 89 REMARK 465 MET D 90 REMARK 465 ARG D 91 REMARK 465 ASP D 92 REMARK 465 THR D 93 REMARK 465 THR D 94 REMARK 465 PRO D 95 REMARK 465 LEU D 96 REMARK 465 GLN D 97 REMARK 465 ARG D 98 REMARK 465 PRO D 288 REMARK 465 ALA D 289 REMARK 465 THR D 290 REMARK 465 ALA D 291 REMARK 465 SER D 292 REMARK 465 SER D 293 REMARK 465 ALA D 294 REMARK 465 THR D 295 REMARK 465 ASP D 296 REMARK 465 LYS D 297 REMARK 465 ASN D 298 REMARK 465 GLY D 299 REMARK 465 ALA D 300 REMARK 465 ASN D 301 REMARK 465 GLY D 302 REMARK 465 ASN D 303 REMARK 465 ALA D 304 REMARK 465 ASN D 305 REMARK 465 ALA D 306 REMARK 465 ALA D 307 REMARK 465 SER D 308 REMARK 465 THR D 309 REMARK 465 ASP D 310 REMARK 465 ALA D 311 REMARK 465 SER D 312 REMARK 465 LEU D 313 REMARK 465 LEU D 314 REMARK 465 MET D 315 REMARK 465 MET D 316 REMARK 465 GLY D 317 REMARK 465 PHE D 318 REMARK 465 PRO D 319 REMARK 465 SER D 320 REMARK 465 ARG D 321 REMARK 465 THR D 322 REMARK 465 LEU D 323 REMARK 465 ALA D 324 REMARK 465 SER D 325 REMARK 465 ALA D 326 REMARK 465 SER D 327 REMARK 465 HIS D 328 REMARK 465 VAL D 329 REMARK 465 SER D 330 REMARK 465 LEU D 331 REMARK 465 CYS D 332 REMARK 465 ALA D 333 REMARK 465 CYS D 334 REMARK 465 HIS D 335 REMARK 465 SER D 336 REMARK 465 ARG D 337 REMARK 465 PRO D 338 REMARK 465 SER D 339 REMARK 465 ARG D 340 REMARK 465 GLU D 341 REMARK 465 GLY D 342 REMARK 465 TYR D 343 REMARK 465 LEU D 344 REMARK 465 CYS D 345 REMARK 465 THR D 346 REMARK 465 ARG D 347 REMARK 465 CYS D 348 REMARK 465 ARG D 349 REMARK 465 ALA D 350 REMARK 465 LYS D 351 REMARK 465 VAL D 352 REMARK 465 CYS D 353 REMARK 465 ARG D 354 REMARK 465 LEU D 355 REMARK 465 PRO D 356 REMARK 465 ALA D 357 REMARK 465 GLU D 358 REMARK 465 CYS D 359 REMARK 465 PRO D 360 REMARK 465 ALA D 361 REMARK 465 CYS D 362 REMARK 465 GLY D 363 REMARK 465 LEU D 364 REMARK 465 THR D 365 REMARK 465 LEU D 366 REMARK 465 ILE D 367 REMARK 465 LEU D 368 REMARK 465 SER D 369 REMARK 465 THR D 370 REMARK 465 HIS D 371 REMARK 465 LEU D 372 REMARK 465 ALA D 373 REMARK 465 ARG D 374 REMARK 465 SER D 375 REMARK 465 TYR D 376 REMARK 465 HIS D 377 REMARK 465 HIS D 378 REMARK 465 LEU D 379 REMARK 465 PHE D 380 REMARK 465 PRO D 381 REMARK 465 LEU D 382 REMARK 465 LYS D 383 REMARK 465 GLY D 384 REMARK 465 TRP D 385 REMARK 465 VAL D 386 REMARK 465 GLU D 387 REMARK 465 VAL D 388 REMARK 465 SER D 389 REMARK 465 TRP D 390 REMARK 465 ALA D 391 REMARK 465 GLU D 392 REMARK 465 ALA D 393 REMARK 465 ARG D 394 REMARK 465 LYS D 395 REMARK 465 SER D 396 REMARK 465 LYS D 397 REMARK 465 GLN D 398 REMARK 465 VAL D 399 REMARK 465 GLY D 400 REMARK 465 CYS D 401 REMARK 465 PHE D 402 REMARK 465 ALA D 403 REMARK 465 CYS D 404 REMARK 465 LEU D 405 REMARK 465 ALA D 406 REMARK 465 PRO D 407 REMARK 465 PHE D 408 REMARK 465 PRO D 409 REMARK 465 LEU D 410 REMARK 465 PRO D 411 REMARK 465 PRO D 412 REMARK 465 ALA D 413 REMARK 465 PRO D 414 REMARK 465 GLY D 415 REMARK 465 SER D 416 REMARK 465 GLU D 417 REMARK 465 LYS D 418 REMARK 465 THR D 419 REMARK 465 GLY D 420 REMARK 465 LYS D 421 REMARK 465 GLU D 422 REMARK 465 PRO D 423 REMARK 465 THR D 424 REMARK 465 GLN D 425 REMARK 465 LYS D 426 REMARK 465 THR D 427 REMARK 465 GLN D 428 REMARK 465 GLY D 429 REMARK 465 GLN D 430 REMARK 465 ALA D 431 REMARK 465 GLN D 432 REMARK 465 GLN D 433 REMARK 465 PRO D 434 REMARK 465 PRO D 435 REMARK 465 GLN D 436 REMARK 465 GLU D 437 REMARK 465 ARG D 438 REMARK 465 GLN D 439 REMARK 465 GLY D 440 REMARK 465 SER D 441 REMARK 465 SER D 442 REMARK 465 SER D 443 REMARK 465 ASN D 444 REMARK 465 SER D 445 REMARK 465 ASN D 446 REMARK 465 ASN D 447 REMARK 465 ALA D 448 REMARK 465 LYS D 449 REMARK 465 LYS D 450 REMARK 465 THR D 451 REMARK 465 THR D 452 REMARK 465 GLY D 453 REMARK 465 ILE D 454 REMARK 465 SER D 455 REMARK 465 LEU D 456 REMARK 465 ALA D 457 REMARK 465 THR D 458 REMARK 465 ALA D 459 REMARK 465 LEU D 460 REMARK 465 PRO D 461 REMARK 465 GLU D 462 REMARK 465 ALA D 463 REMARK 465 ARG D 464 REMARK 465 ALA D 465 REMARK 465 VAL D 466 REMARK 465 GLY D 467 REMARK 465 VAL D 468 REMARK 465 SER D 469 REMARK 465 GLU D 470 REMARK 465 SER D 471 REMARK 465 GLY D 472 REMARK 465 ARG D 473 REMARK 465 TYR D 474 REMARK 465 LYS D 475 REMARK 465 CYS D 476 REMARK 465 PRO D 477 REMARK 465 THR D 478 REMARK 465 CYS D 479 REMARK 465 GLY D 480 REMARK 465 LYS D 481 REMARK 465 HIS D 482 REMARK 465 PHE D 483 REMARK 465 CYS D 484 REMARK 465 ILE D 485 REMARK 465 ASP D 486 REMARK 465 CYS D 487 REMARK 465 ASP D 488 REMARK 465 VAL D 489 REMARK 465 PHE D 490 REMARK 465 ALA D 491 REMARK 465 HIS D 492 REMARK 465 GLU D 493 REMARK 465 VAL D 494 REMARK 465 ILE D 495 REMARK 465 HIS D 496 REMARK 465 ASN D 497 REMARK 465 CYS D 498 REMARK 465 PRO D 499 REMARK 465 GLY D 500 REMARK 465 CYS D 501 REMARK 465 GLN D 502 REMARK 465 ALA D 503 REMARK 465 ASP D 504 REMARK 465 MET D 505 REMARK 465 ARG D 506 REMARK 465 PRO D 507 REMARK 465 LYS D 508 REMARK 465 GLN D 509 REMARK 465 ASP D 510 REMARK 465 ALA D 511 REMARK 465 SER D 512 REMARK 465 SER D 513 REMARK 465 ASN D 514 REMARK 465 ASN D 515 REMARK 465 ILE D 516 REMARK 465 GLY D 517 REMARK 465 PRO D 518 REMARK 465 ALA D 519 REMARK 465 ASN D 520 REMARK 465 GLY D 521 REMARK 465 LEU D 522 REMARK 465 ASN D 523 REMARK 465 ASN D 524 REMARK 465 VAL D 525 REMARK 465 VAL D 526 REMARK 465 ASP D 527 REMARK 465 GLY D 528 REMARK 465 ASP D 529 REMARK 465 ALA D 530 REMARK 465 MET D 531 REMARK 465 VAL D 532 REMARK 465 LEU D 533 REMARK 465 ASP D 534 REMARK 465 DA E -15 REMARK 465 DG E -14 REMARK 465 DC E -13 REMARK 465 DT E -12 REMARK 465 DA E -11 REMARK 465 DC E -10 REMARK 465 DC E -9 REMARK 465 DA E -8 REMARK 465 DT E -7 REMARK 465 DG E -6 REMARK 465 DC E -5 REMARK 465 DC E -4 REMARK 465 DT E -3 REMARK 465 DG E -2 REMARK 465 DC E -1 REMARK 465 DA E 0 REMARK 465 DA E 19 REMARK 465 DT E 20 REMARK 465 DC E 21 REMARK 465 DA E 22 REMARK 465 DT E 23 REMARK 465 DG E 24 REMARK 465 DG E 25 REMARK 465 DT E 26 REMARK 465 DC E 27 REMARK 465 DA E 28 REMARK 465 DT E 29 REMARK 465 DA E 30 REMARK 465 DG E 31 REMARK 465 DC B 65 REMARK 465 DT B 66 REMARK 465 DA B 67 REMARK 465 DT B 68 REMARK 465 DG B 69 REMARK 465 DA B 70 REMARK 465 DC B 71 REMARK 465 DC B 72 REMARK 465 DA B 73 REMARK 465 DT B 74 REMARK 465 DG B 75 REMARK 465 DA B 76 REMARK 465 DT B 77 REMARK 465 DT B 78 REMARK 465 DC B 99 REMARK 465 DT B 100 REMARK 465 DT B 101 REMARK 465 DG B 102 REMARK 465 DG B 103 REMARK 465 DA B 104 REMARK 465 DA B 105 REMARK 465 DT B 106 REMARK 465 DC B 107 REMARK 465 DC B 108 REMARK 465 DT B 109 REMARK 465 DG B 110 REMARK 465 DA B 111 REMARK 465 DC B 112 REMARK 465 DG B 113 REMARK 465 DA B 114 REMARK 465 DA B 115 REMARK 465 DC B 116 REMARK 465 DT B 117 REMARK 465 DG B 118 REMARK 465 DT B 119 REMARK 465 DA B 120 REMARK 465 DG B 121 REMARK 465 DA B 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 585 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 111 OP2 DA E 11 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC E 1 C3' - O3' - P ANGL. DEV. = -9.8 DEGREES REMARK 500 DG E 2 C3' - O3' - P ANGL. DEV. = -12.3 DEGREES REMARK 500 DA E 3 C3' - O3' - P ANGL. DEV. = -12.6 DEGREES REMARK 500 DT E 5 C3' - O3' - P ANGL. DEV. = -11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 43 174.50 -58.74 REMARK 500 VAL A 153 21.38 -141.60 REMARK 500 CYS A 154 -35.62 69.58 REMARK 500 ILE A 155 -59.84 79.60 REMARK 500 PRO A 165 2.96 -65.28 REMARK 500 VAL A 220 -62.27 -121.41 REMARK 500 PHE A 365 56.39 37.06 REMARK 500 LEU A 385 23.08 45.84 REMARK 500 ALA A 485 -6.42 66.35 REMARK 500 ARG A 486 18.84 -155.60 REMARK 500 ASP A 499 33.86 -97.31 REMARK 500 GLN A 500 -123.49 61.37 REMARK 500 ALA A 501 -126.38 57.62 REMARK 500 ASP A 532 -108.63 52.64 REMARK 500 ASP A 572 103.58 -32.79 REMARK 500 VAL A 603 -56.06 65.84 REMARK 500 ASP A 608 122.56 -36.70 REMARK 500 HIS A 611 -46.91 74.98 REMARK 500 PRO A 623 63.23 -69.92 REMARK 500 THR A 642 -61.05 -93.20 REMARK 500 LEU A 667 -113.06 -93.89 REMARK 500 ASP A 671 49.79 -147.13 REMARK 500 ASP A 680 141.36 -170.68 REMARK 500 ILE D 101 73.31 -103.84 REMARK 500 PRO D 121 -114.44 -72.77 REMARK 500 SER D 164 -32.91 -130.09 REMARK 500 HIS D 180 -61.30 -91.47 REMARK 500 SER D 205 -117.76 54.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 132 0.26 SIDE CHAIN REMARK 500 ARG A 134 0.15 SIDE CHAIN REMARK 500 ARG A 256 0.29 SIDE CHAIN REMARK 500 ARG A 257 0.21 SIDE CHAIN REMARK 500 ARG A 260 0.29 SIDE CHAIN REMARK 500 ARG A 383 0.28 SIDE CHAIN REMARK 500 ARG A 584 0.19 SIDE CHAIN REMARK 500 ARG A 665 0.13 SIDE CHAIN REMARK 500 ARG A 668 0.28 SIDE CHAIN REMARK 500 ARG D 102 0.11 SIDE CHAIN REMARK 500 ARG D 123 0.29 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 801 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 115 SG REMARK 620 2 SF4 A 801 S2 115.4 REMARK 620 3 SF4 A 801 S3 114.1 106.2 REMARK 620 4 SF4 A 801 S4 114.0 101.2 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 801 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 133 SG REMARK 620 2 SF4 A 801 S1 100.5 REMARK 620 3 SF4 A 801 S2 90.1 105.7 REMARK 620 4 SF4 A 801 S4 149.4 101.6 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 801 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 154 SG REMARK 620 2 SF4 A 801 S1 93.0 REMARK 620 3 SF4 A 801 S3 148.3 110.3 REMARK 620 4 SF4 A 801 S4 93.0 102.4 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 801 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 189 SG REMARK 620 2 SF4 A 801 S1 115.8 REMARK 620 3 SF4 A 801 S2 136.6 102.0 REMARK 620 4 SF4 A 801 S3 82.5 111.0 104.0 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-19109 RELATED DB: EMDB REMARK 900 STRUCTURE OF XPD STALLED AT A Y-FORK DNA CONTAINING A INTERSTRAND REMARK 900 CROSSLINK DBREF 8REV A 1 797 UNP G0RZH0 G0RZH0_CHATD 1 780 DBREF 8REV D 1 534 UNP G0RZE6 G0RZE6_CHATD 1 534 DBREF 8REV E -15 31 PDB 8REV 8REV -15 31 DBREF 8REV B 65 82 PDB 8REV 8REV 65 82 DBREF 8REV B 83 122 PDB 8REV 8REV 83 122 SEQADV 8REV ASP A 7 UNP G0RZH0 INSERTION SEQADV 8REV LEU A 8 UNP G0RZH0 INSERTION SEQADV 8REV PRO A 9 UNP G0RZH0 INSERTION SEQADV 8REV VAL A 10 UNP G0RZH0 INSERTION SEQADV 8REV LEU A 11 UNP G0RZH0 INSERTION SEQADV 8REV PHE A 12 UNP G0RZH0 INSERTION SEQADV 8REV PRO A 13 UNP G0RZH0 INSERTION SEQADV 8REV TYR A 14 UNP G0RZH0 INSERTION SEQADV 8REV PRO A 15 UNP G0RZH0 INSERTION SEQADV 8REV ARG A 16 UNP G0RZH0 INSERTION SEQADV 8REV ILE A 17 UNP G0RZH0 INSERTION SEQADV 8REV TYR A 18 UNP G0RZH0 INSERTION SEQADV 8REV PRO A 19 UNP G0RZH0 INSERTION SEQADV 8REV GLU A 20 UNP G0RZH0 INSERTION SEQADV 8REV GLN A 21 UNP G0RZH0 INSERTION SEQADV 8REV TYR A 22 UNP G0RZH0 INSERTION SEQADV 8REV ALA A 23 UNP G0RZH0 INSERTION SEQRES 1 A 797 MET GLU PHE MET ILE ASP ASP LEU PRO VAL LEU PHE PRO SEQRES 2 A 797 TYR PRO ARG ILE TYR PRO GLU GLN TYR ALA TYR MET CYS SEQRES 3 A 797 ASP LEU LYS LYS THR LEU ASP ALA GLY GLY ASN CYS VAL SEQRES 4 A 797 LEU GLU MET PRO SER GLY THR GLY LYS THR ILE THR LEU SEQRES 5 A 797 LEU SER LEU ILE VAL ALA TYR GLN GLN HIS TYR ALA GLU SEQRES 6 A 797 HIS ARG LYS LEU ILE TYR CYS SER ARG THR MET SER GLU SEQRES 7 A 797 ILE GLU LYS ALA LEU VAL GLU LEU LYS ALA LEU MET LYS SEQRES 8 A 797 PHE ARG ALA GLU ARG LEU GLY TYR VAL GLU GLU PHE ARG SEQRES 9 A 797 GLY LEU GLY LEU THR SER ARG LYS ASN LEU CYS LEU HIS SEQRES 10 A 797 PRO SER VAL LYS ARG GLU LYS SER GLY THR ILE VAL ASP SEQRES 11 A 797 ALA ARG CYS ARG SER LEU THR ALA GLY PHE VAL LYS GLU SEQRES 12 A 797 LYS LYS GLN ARG GLY GLU ASP VAL ASP VAL CYS ILE TYR SEQRES 13 A 797 HIS ASP ASN LEU ASP LEU LEU GLU PRO HIS ASN LEU ILE SEQRES 14 A 797 PRO ASN GLY ILE TRP THR LEU ASP ASN LEU LEU LYS TYR SEQRES 15 A 797 GLY GLU GLU HIS LYS GLN CYS PRO TYR PHE THR ALA ARG SEQRES 16 A 797 ARG MET LEU GLN TYR CYS ASN VAL VAL ILE TYR SER TYR SEQRES 17 A 797 HIS TYR LEU LEU ASP PRO LYS ILE ALA GLU ARG VAL SER SEQRES 18 A 797 ARG ASP LEU SER SER ASP SER ILE VAL VAL PHE ASP GLU SEQRES 19 A 797 ALA HIS ASN ILE ASP ASN VAL CYS ILE GLU ALA LEU SER SEQRES 20 A 797 THR ASP ILE THR GLU GLU SER LEU ARG ARG ALA THR ARG SEQRES 21 A 797 GLY ALA GLN ASN LEU GLU ASN ARG ILE ASN GLU MET LYS SEQRES 22 A 797 GLU THR ASP GLN GLN LYS LEU GLN ASP GLU TYR GLU LYS SEQRES 23 A 797 LEU VAL GLU GLY LEU ARG GLY ASN ASP ASP GLY THR ARG SEQRES 24 A 797 GLU ASP SER PHE MET THR SER PRO VAL LEU PRO GLN ASP SEQRES 25 A 797 LEU LEU LYS GLU ALA VAL PRO GLY ASN ILE ARG ARG ALA SEQRES 26 A 797 GLU HIS PHE VAL ALA PHE LEU ARG ARG PHE ILE GLU TYR SEQRES 27 A 797 LEU LYS THR ARG MET LYS VAL ARG GLN VAL ILE SER GLU SEQRES 28 A 797 THR PRO PRO SER PHE LEU ALA HIS LEU LYS GLU TYR THR SEQRES 29 A 797 PHE ILE GLU LYS LYS PRO LEU ARG TRP CYS ALA GLU ARG SEQRES 30 A 797 LEU THR SER LEU VAL ARG THR LEU GLU LEU THR ASN ILE SEQRES 31 A 797 GLU ASP TYR HIS ALA LEU GLN GLU VAL ALA THR PHE ALA SEQRES 32 A 797 THR LEU VAL ALA THR TYR GLU LYS GLY PHE LEU LEU ILE SEQRES 33 A 797 LEU GLU PRO TYR GLU SER ASP THR ALA GLU VAL PRO ASN SEQRES 34 A 797 PRO VAL LEU HIS PHE CYS CYS LEU ASP ALA ALA ILE ALA SEQRES 35 A 797 ILE LYS PRO VAL PHE ASP LYS PHE ARG ASN VAL ILE ILE SEQRES 36 A 797 THR SER GLY THR ILE SER PRO LEU GLU MET TYR PRO LYS SEQRES 37 A 797 MET LEU ASN PHE THR THR VAL VAL GLN GLU SER TYR SER SEQRES 38 A 797 MET THR LEU ALA ARG ARG SER PHE LEU PRO LEU ILE VAL SEQRES 39 A 797 THR ARG GLY SER ASP GLN ALA SER ILE SER THR GLY PHE SEQRES 40 A 797 GLN VAL ARG ASN GLU PRO SER VAL VAL ARG ASN TYR GLY SEQRES 41 A 797 ASN LEU LEU THR GLU PHE ALA LYS ILE THR PRO ASP GLY SEQRES 42 A 797 MET VAL VAL PHE PHE PRO SER TYR LEU TYR MET GLU SER SEQRES 43 A 797 ILE ILE SER MET TRP GLN GLY MET GLY ILE LEU ASP GLU SEQRES 44 A 797 VAL TRP LYS TYR LYS LEU ILE LEU VAL GLU THR PRO ASP SEQRES 45 A 797 ALA GLN GLU THR SER LEU ALA LEU GLU THR TYR ARG THR SEQRES 46 A 797 ALA CYS CYS ASN GLY ARG GLY ALA VAL LEU LEU CYS VAL SEQRES 47 A 797 ALA ARG GLY LYS VAL SER GLU GLY ILE ASP PHE ASP HIS SEQRES 48 A 797 GLN TYR GLY ARG THR VAL LEU CYS ILE GLY VAL PRO PHE SEQRES 49 A 797 GLN TYR THR GLU SER ARG ILE LEU LYS ALA ARG LEU GLU SEQRES 50 A 797 PHE LEU ARG GLU THR TYR ARG ILE ARG GLU ASN ASP PHE SEQRES 51 A 797 LEU SER PHE ASP ALA MET ARG HIS ALA ALA GLN CYS LEU SEQRES 52 A 797 GLY ARG VAL LEU ARG GLY LYS ASP ASP TYR GLY LEU MET SEQRES 53 A 797 VAL LEU ALA ASP ARG ARG PHE GLN LYS LYS ARG ASN GLN SEQRES 54 A 797 LEU PRO LYS TRP ILE ALA GLN ALA LEU LEU ASP ALA ASP SEQRES 55 A 797 THR ASN LEU SER THR ASP MET ALA VAL SER SER ALA ARG SEQRES 56 A 797 ARG PHE LEU LYS THR MET ALA GLN PRO PHE LYS ALA LYS SEQRES 57 A 797 ASP GLN GLU GLY ILE SER THR TRP SER LEU GLU ASP LEU SEQRES 58 A 797 LYS ARG HIS GLN GLN LYS MET ASP GLU GLU ARG MET LYS SEQRES 59 A 797 GLU LEU GLU ALA GLN ARG GLU LYS GLU SER ALA PRO ALA SEQRES 60 A 797 VAL GLU ARG PRO ALA ASP GLN GLY ARG GLU SER ASP TYR SEQRES 61 A 797 GLU VAL ASP GLU GLU GLU GLU ARG GLU MET MET ALA LEU SEQRES 62 A 797 ASP VAL GLY ASN SEQRES 1 D 534 MET ALA ASP SER ASP GLY GLU TYR VAL GLU ASP LEU SER SEQRES 2 D 534 ASP ASP GLU LEU HIS ASP HIS ARG PRO ALA GLU ALA GLY SEQRES 3 D 534 PRO HIS GLY ALA ARG SER LYS ALA GLY ALA GLY LYS LYS SEQRES 4 D 534 ARG ASP GLY LYS LYS GLY LYS LYS GLY SER SER ARG HIS SEQRES 5 D 534 THR LYS ALA ALA TRP GLU ASP ILE GLN ARG SER TRP GLU SEQRES 6 D 534 ASN VAL VAL GLU THR GLU ASP GLY SER ILE THR ILE GLU SEQRES 7 D 534 ALA LEU ILE GLU ALA GLU LYS ARG ARG ARG LEU MET ARG SEQRES 8 D 534 ASP THR THR PRO LEU GLN ARG GLY ILE ILE ARG HIS LEU SEQRES 9 D 534 VAL LEU VAL LEU ASP MET SER PHE ALA MET ALA GLU LYS SEQRES 10 D 534 ASP LEU LEU PRO ASN ARG TYR LEU LEU THR LEU ASN TYR SEQRES 11 D 534 ALA VAL ASP PHE VAL ARG GLU TYR PHE GLU GLN ASN PRO SEQRES 12 D 534 ILE SER GLN MET GLY ILE ILE ALA MET ARG ASP GLY ILE SEQRES 13 D 534 ALA VAL ARG VAL SER ASP MET SER GLY ASN PRO ALA ASP SEQRES 14 D 534 HIS ILE GLU ARG LEU ARG PHE TRP ALA GLU HIS GLN GLU SEQRES 15 D 534 PRO GLN GLY ASN PRO SER LEU GLN ASN ALA LEU GLU MET SEQRES 16 D 534 CYS ARG GLY ALA LEU TYR HIS THR PRO SER HIS GLY THR SEQRES 17 D 534 ARG GLU VAL LEU ILE VAL TYR GLY ALA LEU LEU SER SER SEQRES 18 D 534 ASP PRO GLY ASP ILE HIS GLU THR ILE SER ASN LEU VAL SEQRES 19 D 534 LYS ASP ARG ILE ARG VAL THR VAL VAL GLY LEU ALA ALA SEQRES 20 D 534 GLN VAL ALA VAL CYS ALA GLU LEU CYS THR ARG THR ASN SEQRES 21 D 534 HIS GLY ASP ASP SER THR TYR ALA VAL ALA LEU HIS GLU SEQRES 22 D 534 GLN HIS PHE ARG GLU LEU PHE LEU ALA ALA THR ILE PRO SEQRES 23 D 534 PRO PRO ALA THR ALA SER SER ALA THR ASP LYS ASN GLY SEQRES 24 D 534 ALA ASN GLY ASN ALA ASN ALA ALA SER THR ASP ALA SER SEQRES 25 D 534 LEU LEU MET MET GLY PHE PRO SER ARG THR LEU ALA SER SEQRES 26 D 534 ALA SER HIS VAL SER LEU CYS ALA CYS HIS SER ARG PRO SEQRES 27 D 534 SER ARG GLU GLY TYR LEU CYS THR ARG CYS ARG ALA LYS SEQRES 28 D 534 VAL CYS ARG LEU PRO ALA GLU CYS PRO ALA CYS GLY LEU SEQRES 29 D 534 THR LEU ILE LEU SER THR HIS LEU ALA ARG SER TYR HIS SEQRES 30 D 534 HIS LEU PHE PRO LEU LYS GLY TRP VAL GLU VAL SER TRP SEQRES 31 D 534 ALA GLU ALA ARG LYS SER LYS GLN VAL GLY CYS PHE ALA SEQRES 32 D 534 CYS LEU ALA PRO PHE PRO LEU PRO PRO ALA PRO GLY SER SEQRES 33 D 534 GLU LYS THR GLY LYS GLU PRO THR GLN LYS THR GLN GLY SEQRES 34 D 534 GLN ALA GLN GLN PRO PRO GLN GLU ARG GLN GLY SER SER SEQRES 35 D 534 SER ASN SER ASN ASN ALA LYS LYS THR THR GLY ILE SER SEQRES 36 D 534 LEU ALA THR ALA LEU PRO GLU ALA ARG ALA VAL GLY VAL SEQRES 37 D 534 SER GLU SER GLY ARG TYR LYS CYS PRO THR CYS GLY LYS SEQRES 38 D 534 HIS PHE CYS ILE ASP CYS ASP VAL PHE ALA HIS GLU VAL SEQRES 39 D 534 ILE HIS ASN CYS PRO GLY CYS GLN ALA ASP MET ARG PRO SEQRES 40 D 534 LYS GLN ASP ALA SER SER ASN ASN ILE GLY PRO ALA ASN SEQRES 41 D 534 GLY LEU ASN ASN VAL VAL ASP GLY ASP ALA MET VAL LEU SEQRES 42 D 534 ASP SEQRES 1 E 47 DA DG DC DT DA DC DC DA DT DG DC DC DT SEQRES 2 E 47 DG DC DA DC DG DA DA DT DT DA DA DG DC SEQRES 3 E 47 DA DT DC DG DC DG DT DA DA DT DC DA DT SEQRES 4 E 47 DG DG DT DC DA DT DA DG SEQRES 1 B 46 DC DT DA DT DG DA DC DC DA DT DG DA DT SEQRES 2 B 46 DT DA DC DG DC L5R DC DT DG DC DT DT DG SEQRES 3 B 46 DG DA DA DT DC DC DT DG DA DC DG DA DA SEQRES 4 B 46 DC DT DG DT DA DG DA HET L5R B 83 35 HET SF4 A 801 8 HET ADP A 802 27 HETNAM L5R [(2R,3S,5R)-5-[(1R,6R)-3,5-BIS(OXIDANYLIDENE)-8-PHENYL- HETNAM 2 L5R 6-(2-PHENYLETHYNYL)-2,4-DIAZABICYCLO[4.2.0]OCT-7-EN-2- HETNAM 3 L5R YL]-3-OXIDANYL-OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 4 L5R C25 H23 N2 O8 P FORMUL 5 SF4 FE4 S4 FORMUL 6 ADP C10 H15 N5 O10 P2 HELIX 1 AA1 TYR A 18 GLY A 35 1 18 HELIX 2 AA2 GLY A 47 TYR A 63 1 17 HELIX 3 AA3 THR A 75 GLY A 98 1 24 HELIX 4 AA4 SER A 110 CYS A 115 1 6 HELIX 5 AA5 HIS A 117 GLU A 123 1 7 HELIX 6 AA6 SER A 125 THR A 137 1 13 HELIX 7 AA7 GLY A 139 GLY A 148 1 10 HELIX 8 AA8 ILE A 155 LEU A 160 1 6 HELIX 9 AA9 ASP A 161 LEU A 163 5 3 HELIX 10 AB1 THR A 175 HIS A 186 1 12 HELIX 11 AB2 CYS A 189 MET A 197 1 9 HELIX 12 AB3 TYR A 208 ASP A 213 1 6 HELIX 13 AB4 ASP A 213 VAL A 220 1 8 HELIX 14 AB5 ASN A 237 LEU A 246 1 10 HELIX 15 AB6 GLU A 252 GLU A 274 1 23 HELIX 16 AB7 ASN A 321 LYS A 344 1 24 HELIX 17 AB8 THR A 352 TYR A 363 1 12 HELIX 18 AB9 GLU A 367 THR A 384 1 18 HELIX 19 AC1 ASP A 392 TYR A 409 1 18 HELIX 20 AC2 ALA A 439 PHE A 450 1 12 HELIX 21 AC3 GLU A 464 ASN A 471 1 8 HELIX 22 AC4 GLU A 512 THR A 530 1 19 HELIX 23 AC5 SER A 540 MET A 554 1 15 HELIX 24 AC6 GLY A 555 TYR A 563 1 9 HELIX 25 AC7 ASP A 572 GLY A 590 1 19 HELIX 26 AC8 SER A 629 ARG A 644 1 16 HELIX 27 AC9 ARG A 646 GLY A 664 1 19 HELIX 28 AD1 ARG A 681 LYS A 685 5 5 HELIX 29 AD2 PRO A 691 LEU A 698 1 8 HELIX 30 AD3 LEU A 699 THR A 703 5 5 HELIX 31 AD4 THR A 707 GLN A 723 1 17 HELIX 32 AD5 SER A 737 LYS A 754 1 18 HELIX 33 AD6 ASN D 122 ASN D 142 1 21 HELIX 34 AD7 ASN D 166 HIS D 180 1 15 HELIX 35 AD8 SER D 188 LEU D 200 1 13 HELIX 36 AD9 ASP D 225 ASP D 236 1 12 HELIX 37 AE1 VAL D 249 ASN D 260 1 12 HELIX 38 AE2 ASP D 263 SER D 265 5 3 HELIX 39 AE3 HIS D 272 ALA D 283 1 12 SHEET 1 AA1 2 GLU A 2 MET A 4 0 SHEET 2 AA1 2 PRO A 9 LEU A 11 -1 O VAL A 10 N PHE A 3 SHEET 1 AA2 7 ASN A 37 CYS A 38 0 SHEET 2 AA2 7 VAL A 453 THR A 456 1 O ILE A 455 N CYS A 38 SHEET 3 AA2 7 ILE A 229 ASP A 233 1 N VAL A 230 O ILE A 454 SHEET 4 AA2 7 LEU A 69 SER A 73 1 N ILE A 70 O ILE A 229 SHEET 5 AA2 7 VAL A 203 SER A 207 1 O VAL A 204 N LEU A 69 SHEET 6 AA2 7 ARG A 104 LEU A 108 1 N ARG A 104 O VAL A 203 SHEET 7 AA2 7 GLY A 172 TRP A 174 1 O TRP A 174 N GLY A 105 SHEET 1 AA3 4 THR A 248 THR A 251 0 SHEET 2 AA3 4 PRO A 428 CYS A 436 -1 O PHE A 434 N THR A 248 SHEET 3 AA3 4 PHE A 413 TYR A 420 -1 N ILE A 416 O HIS A 433 SHEET 4 AA3 4 ILE A 349 GLU A 351 -1 N ILE A 349 O LEU A 417 SHEET 1 AA4 7 LYS A 564 VAL A 568 0 SHEET 2 AA4 7 GLY A 592 VAL A 598 1 O GLY A 592 N LEU A 565 SHEET 3 AA4 7 GLY A 533 PHE A 538 1 N VAL A 536 O LEU A 595 SHEET 4 AA4 7 GLY A 614 CYS A 619 1 O THR A 616 N VAL A 535 SHEET 5 AA4 7 LEU A 675 ALA A 679 1 O LEU A 675 N ARG A 615 SHEET 6 AA4 7 LEU A 492 ARG A 496 1 N VAL A 494 O LEU A 678 SHEET 7 AA4 7 LEU A 705 SER A 706 1 O LEU A 705 N THR A 495 SHEET 1 AA5 5 GLN D 146 MET D 152 0 SHEET 2 AA5 5 HIS D 103 ASP D 109 1 N LEU D 106 O GLY D 148 SHEET 3 AA5 5 GLU D 210 TYR D 215 1 O LEU D 212 N VAL D 107 SHEET 4 AA5 5 ARG D 239 GLY D 244 1 O THR D 241 N ILE D 213 SHEET 5 AA5 5 TYR D 267 VAL D 269 1 O ALA D 268 N VAL D 242 LINK C5 DT E 12 C7 L5R B 83 1555 1555 1.47 LINK O3' DC B 82 P L5R B 83 1555 1555 1.61 LINK O3' L5R B 83 P DC B 96 1555 1555 1.61 LINK SG CYS A 115 FE1 SF4 A 801 1555 1555 2.18 LINK SG CYS A 133 FE3 SF4 A 801 1555 1555 2.62 LINK SG CYS A 154 FE2 SF4 A 801 1555 1555 2.16 LINK SG CYS A 189 FE4 SF4 A 801 1555 1555 2.24 CISPEP 1 SER A 461 PRO A 462 0 0.48 CISPEP 2 LEU D 120 PRO D 121 0 -1.81 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000