HEADER TRANSFERASE 15-DEC-23 8RHM TITLE SOLUTION STRUCTURE OF SULFAZECIN NRPS HOLO-PCP DOMAIN 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-RIBOSOMAL PEPTIDE SYNTHETASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS E264; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 GENE: BTH_I1956; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEPTIDYL CARRIER PROTEIN, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.CHAGOT REVDAT 2 13-AUG-25 8RHM 1 JRNL REVDAT 1 29-JAN-25 8RHM 0 JRNL AUTH S.SCAT,K.J.WEISSMAN,B.CHAGOT JRNL TITL SOLUTION STRUCTURE OF SULFAZECIN NRPS HOLO-PCP DOMAIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292134954. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PCP3, 100 MM SODIUM PHOSPHATE, 2 REMARK 210 MM TCEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNHA; 3D HNCO; 3D CCH- REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY; 3D REMARK 210 CB(CGCD)HD; 3D CB(CGCD)HE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRFAM-SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A2638 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 TYR A2691 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 3 ARG A2705 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 6 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 7 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8 ARG A2638 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 8 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A2638 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 10 ARG A2638 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 10 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 11 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 12 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A2638 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 14 ARG A2638 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 15 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 16 ARG A2638 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 16 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 17 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 18 TYR A2691 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 19 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 20 ARG A2650 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A2657 51.53 -95.69 REMARK 500 2 ARG A2638 -112.06 31.82 REMARK 500 2 PRO A2694 37.58 -87.63 REMARK 500 3 ARG A2638 -68.70 -161.64 REMARK 500 3 ASP A2670 -173.58 -171.38 REMARK 500 3 PRO A2694 43.07 -87.98 REMARK 500 4 SER A 0 -124.60 -87.19 REMARK 500 4 ARG A2638 -108.62 -133.86 REMARK 500 5 SER A 0 -132.04 49.12 REMARK 500 5 ARG A2638 -94.24 -123.81 REMARK 500 5 PRO A2694 33.70 -88.67 REMARK 500 6 ARG A2638 -87.36 -156.13 REMARK 500 6 PRO A2694 44.18 -87.43 REMARK 500 8 SER A 0 149.31 82.17 REMARK 500 8 ARG A2638 -64.50 -122.07 REMARK 500 8 PRO A2694 41.00 -87.41 REMARK 500 9 ARG A2638 -120.92 55.87 REMARK 500 9 PRO A2694 39.46 -87.64 REMARK 500 10 PRO A -2 34.71 -93.69 REMARK 500 10 ARG A2638 -80.51 -137.12 REMARK 500 10 PRO A2694 41.64 -87.18 REMARK 500 11 PRO A -2 -168.69 -78.12 REMARK 500 11 SER A 0 122.66 89.46 REMARK 500 11 ARG A2638 16.91 -157.03 REMARK 500 12 PRO A2694 40.05 -86.44 REMARK 500 13 SER A 0 -94.12 -89.99 REMARK 500 13 ARG A2638 -93.93 -124.29 REMARK 500 13 ASP A2656 28.94 -144.33 REMARK 500 13 PRO A2694 39.14 -87.35 REMARK 500 14 ARG A2638 -85.28 -142.86 REMARK 500 14 ASP A2670 -174.38 -172.54 REMARK 500 14 PRO A2694 42.13 -86.94 REMARK 500 15 SER A 0 -130.66 44.67 REMARK 500 15 ARG A2638 -83.55 -84.46 REMARK 500 15 PRO A2694 43.23 -88.03 REMARK 500 16 ARG A2638 -128.18 52.48 REMARK 500 17 ARG A2638 -70.45 -158.11 REMARK 500 18 SER A 0 -143.22 62.45 REMARK 500 18 PRO A2694 43.50 -87.73 REMARK 500 19 ARG A2638 -68.72 -163.55 REMARK 500 20 ARG A2638 -73.82 -99.36 REMARK 500 20 PRO A2694 40.07 -86.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34888 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF NRPS HOLO-PCP3 DBREF 8RHM A 2638 2705 UNP Q2SX64 Q2SX64_BURTA 2638 2705 SEQADV 8RHM GLY A -3 UNP Q2SX64 EXPRESSION TAG SEQADV 8RHM PRO A -2 UNP Q2SX64 EXPRESSION TAG SEQADV 8RHM GLY A -1 UNP Q2SX64 EXPRESSION TAG SEQADV 8RHM SER A 0 UNP Q2SX64 EXPRESSION TAG SEQRES 1 A 72 GLY PRO GLY SER ARG THR PRO VAL GLU LEU ARG LEU THR SEQRES 2 A 72 GLU ILE PHE ARG ASP VAL LEU GLY HIS ASP ALA PHE GLY SEQRES 3 A 72 VAL LEU ASP ASP PHE PHE GLU LEU GLY GLY ASP 4HH PHE SEQRES 4 A 72 LYS ALA ILE ARG ILE ALA ALA LYS TYR GLY PRO PRO LEU SEQRES 5 A 72 GLU VAL THR ASP ILE TYR ASP HIS PRO THR ILE GLU ALA SEQRES 6 A 72 LEU ALA ALA HIS LEU ALA ARG MODRES 8RHM 4HH A 2671 SER MODIFIED RESIDUE HET 4HH A2671 52 HETNAM 4HH 4'-PHOSPHOPANTHETHEINE-SERINE HETSYN 4HH O-[(S)-HYDROXY{[(3R)-3-HYDROXY-2,2-DIMETHYL-4-OXO-4- HETSYN 2 4HH ({3-OXO-3-[(2-SULFANYLETHYL)AMINO]PROPYL}AMINO) HETSYN 3 4HH BUTYL]OXY}PHOSPHORYL]-L-SERINE FORMUL 1 4HH C14 H28 N3 O9 P S HELIX 1 AA1 THR A 2639 GLY A 2654 1 16 HELIX 2 AA2 ASP A 2670 GLY A 2682 1 13 HELIX 3 AA3 GLU A 2686 HIS A 2693 1 8 HELIX 4 AA4 THR A 2695 ALA A 2704 1 10 LINK C ASP A2670 N 4HH A2671 1555 1555 1.33 LINK C 4HH A2671 N PHE A2672 1555 1555 1.34 CISPEP 1 PRO A 2683 PRO A 2684 1 7.61 CISPEP 2 PRO A 2683 PRO A 2684 2 7.65 CISPEP 3 PRO A 2683 PRO A 2684 3 7.56 CISPEP 4 PRO A 2683 PRO A 2684 4 9.33 CISPEP 5 PRO A 2683 PRO A 2684 5 12.35 CISPEP 6 PRO A 2683 PRO A 2684 6 7.70 CISPEP 7 PRO A 2683 PRO A 2684 7 11.43 CISPEP 8 PRO A 2683 PRO A 2684 8 8.88 CISPEP 9 PRO A 2683 PRO A 2684 9 8.25 CISPEP 10 PRO A 2683 PRO A 2684 10 7.74 CISPEP 11 PRO A 2683 PRO A 2684 11 8.08 CISPEP 12 PRO A 2683 PRO A 2684 12 7.31 CISPEP 13 GLY A -3 PRO A -2 13 -2.43 CISPEP 14 PRO A 2683 PRO A 2684 13 8.35 CISPEP 15 PRO A 2683 PRO A 2684 14 3.54 CISPEP 16 PRO A 2683 PRO A 2684 15 8.17 CISPEP 17 GLY A -3 PRO A -2 16 -1.20 CISPEP 18 PRO A 2683 PRO A 2684 16 9.73 CISPEP 19 PRO A 2683 PRO A 2684 17 7.57 CISPEP 20 GLY A -3 PRO A -2 18 5.22 CISPEP 21 PRO A 2683 PRO A 2684 18 8.71 CISPEP 22 PRO A 2683 PRO A 2684 19 13.47 CISPEP 23 GLY A -3 PRO A -2 20 1.09 CISPEP 24 PRO A 2683 PRO A 2684 20 8.30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 548 561 CONECT 558 559 CONECT 559 558 560 610 CONECT 560 559 561 562 585 CONECT 561 548 560 586 CONECT 562 560 563 587 588 CONECT 563 562 573 CONECT 564 565 576 589 590 CONECT 565 564 566 567 569 CONECT 566 565 591 592 593 CONECT 567 565 594 595 596 CONECT 568 569 571 572 CONECT 569 565 568 570 597 CONECT 570 569 598 CONECT 571 568 577 599 CONECT 572 568 CONECT 573 563 574 575 576 CONECT 574 573 CONECT 575 573 CONECT 576 564 573 CONECT 577 571 578 600 601 CONECT 578 577 579 602 603 CONECT 579 578 582 583 CONECT 580 581 582 604 605 CONECT 581 580 584 606 607 CONECT 582 579 580 608 CONECT 583 579 CONECT 584 581 609 CONECT 585 560 CONECT 586 561 CONECT 587 562 CONECT 588 562 CONECT 589 564 CONECT 590 564 CONECT 591 566 CONECT 592 566 CONECT 593 566 CONECT 594 567 CONECT 595 567 CONECT 596 567 CONECT 597 569 CONECT 598 570 CONECT 599 571 CONECT 600 577 CONECT 601 577 CONECT 602 578 CONECT 603 578 CONECT 604 580 CONECT 605 580 CONECT 606 581 CONECT 607 581 CONECT 608 582 CONECT 609 584 CONECT 610 559 MASTER 179 0 1 4 0 0 0 6 580 1 54 6 END