HEADER RNA BINDING PROTEIN 16-DEC-23 8RHS TITLE STRUCTURE OF THE ZNF DOMAIN FROM HUMAN ROQUIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ROQUIN,RING FINGER AND C3H ZINC FINGER PROTEIN 1,RING FINGER COMPND 5 AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1,RING FINGER COMPND 6 PROTEIN 198; COMPND 7 EC: 2.3.2.27; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: C3H1-TYPE OF ZINC FINGER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RC3H1, KIAA2025, RNF198; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETTRX1A KEYWDS ZNF, ROQUIN, C3H1, IMMUNE-REGULATION, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.SCHLUNDT,J.N.TANTS REVDAT 2 17-JUL-24 8RHS 1 JRNL REVDAT 1 03-JUL-24 8RHS 0 JRNL AUTH J.N.TANTS,L.OBERSTRASS,J.E.WEIGAND,A.SCHLUNDT JRNL TITL STRUCTURE AND RNA-BINDING OF THE HELICALLY EXTENDED ROQUIN JRNL TITL 2 CCCH-TYPE ZINC FINGER. JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38953172 JRNL DOI 10.1093/NAR/GKAE555 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3, CYANA 3 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135061. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.36 MM [U-15N] HUMAN ROQUIN-1 REMARK 210 ZINC FINGER DOMAIN, 25 MM TRIS, REMARK 210 150 MM SODIUM CHLORIDE, 2 MM REMARK 210 TCEP, 0.02 MG/ML ZINC, 90% H2O/ REMARK 210 10% D2O; 0.74 MM [U-100% 13C; U- REMARK 210 100% 15N] HUMAN ROQUIN-1 ZINC REMARK 210 FINGER DOMAIN, 25 MM TRIS, 150 REMARK 210 MM SODIUM CHLORIDE, 2 MM TCEP, REMARK 210 0.02 MM ZINC, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D; 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D HNCACB; 3D REMARK 210 HBHANH; 3D HN(CA)CO; 3D HNCO; 3D REMARK 210 CCH TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.X, CCPNMR ANALYSIS 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 419 79.35 -104.64 REMARK 500 1 GLN A 424 -70.66 -118.54 REMARK 500 1 ARG A 425 -179.55 -63.71 REMARK 500 1 ALA A 432 -77.67 -49.43 REMARK 500 2 ALA A 432 -77.47 -49.61 REMARK 500 2 ARG A 452 46.63 -98.67 REMARK 500 3 ALA A 410 146.76 -172.72 REMARK 500 3 LYS A 413 37.06 -98.56 REMARK 500 3 CYS A 419 59.96 -118.00 REMARK 500 3 ALA A 432 -76.35 -50.11 REMARK 500 4 ALA A 432 -76.53 -49.93 REMARK 500 5 LYS A 413 51.20 -103.50 REMARK 500 5 ALA A 432 -76.44 -49.97 REMARK 500 6 ALA A 432 -76.40 -49.99 REMARK 500 7 LYS A 413 38.77 -95.38 REMARK 500 7 TYR A 414 -71.94 -65.14 REMARK 500 7 ARG A 425 -74.01 -56.86 REMARK 500 7 ALA A 432 -76.99 -49.85 REMARK 500 8 HIS A 411 53.97 -99.48 REMARK 500 8 ALA A 432 -76.45 -49.93 REMARK 500 8 LEU A 453 -52.15 -131.75 REMARK 500 9 ALA A 432 -76.72 -49.86 REMARK 500 10 ALA A 408 49.10 -102.50 REMARK 500 10 CYS A 419 73.04 -104.31 REMARK 500 10 ALA A 432 -78.18 -49.15 REMARK 500 11 ALA A 408 66.93 -105.39 REMARK 500 11 ALA A 432 -78.01 -49.21 REMARK 500 12 ALA A 432 -78.46 -49.14 REMARK 500 12 LYS A 451 59.31 -107.07 REMARK 500 13 LYS A 413 55.84 -110.63 REMARK 500 13 CYS A 419 72.99 -114.84 REMARK 500 13 ALA A 432 -77.69 -49.63 REMARK 500 14 TYR A 414 -72.16 -77.39 REMARK 500 14 ALA A 432 -77.62 -49.46 REMARK 500 14 LEU A 453 -71.85 -120.90 REMARK 500 15 SER A 412 59.64 -101.08 REMARK 500 15 ALA A 432 -77.52 -49.55 REMARK 500 16 HIS A 411 132.32 -173.83 REMARK 500 16 ALA A 432 -76.28 -50.26 REMARK 500 16 THR A 435 44.60 36.70 REMARK 500 16 ALA A 437 65.53 -153.87 REMARK 500 17 ALA A 432 -76.27 -50.04 REMARK 500 17 ARG A 452 70.20 -109.39 REMARK 500 18 ALA A 432 -76.80 -49.74 REMARK 500 18 ARG A 452 106.30 -54.15 REMARK 500 19 LYS A 413 53.58 -110.97 REMARK 500 19 ALA A 432 -76.82 -49.94 REMARK 500 20 ALA A 432 -76.46 -50.20 REMARK 500 20 THR A 435 45.34 36.28 REMARK 500 20 ALA A 437 70.46 -159.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 52226 RELATED DB: BMRB DBREF 8RHS A 411 454 UNP Q5TC82 RC3H1_HUMAN 411 454 SEQADV 8RHS GLY A 407 UNP Q5TC82 EXPRESSION TAG SEQADV 8RHS ALA A 408 UNP Q5TC82 EXPRESSION TAG SEQADV 8RHS MET A 409 UNP Q5TC82 EXPRESSION TAG SEQADV 8RHS ALA A 410 UNP Q5TC82 EXPRESSION TAG SEQRES 1 A 48 GLY ALA MET ALA HIS SER LYS TYR LYS THR TYR MET CYS SEQRES 2 A 48 ARG ASP MET LYS GLN ARG GLY GLY CYS PRO ARG GLY ALA SEQRES 3 A 48 SER CYS THR PHE ALA HIS SER GLN GLU GLU LEU GLU LYS SEQRES 4 A 48 PHE ARG LYS MET ASN LYS ARG LEU VAL HELIX 1 AA1 CYS A 419 GLN A 424 5 6 HELIX 2 AA2 SER A 439 GLU A 444 1 6 HELIX 3 AA3 PHE A 446 LYS A 451 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1