HEADER SIGNALING PROTEIN 18-DEC-23 8RIB TITLE N-TERMINAL DOMAIN OF TRYPANOSOMA BRUCEI PEX14 IN COMPLEX WITH A TITLE 2 PYRAZOLO-PYRAZOLO[4,3-C]PYRIDIN-3-YL COMPOUND SHOWING A NOVEL BINDING TITLE 3 POSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL MEMBRANE PROTEIN PEX14; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PEROXIN-14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 GENE: PEX14; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURE-BASED DRUG DISCOVERY, COMPLEX, INHIBITOR, TRYPANOSOMIASIS, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.NAPOLITANO,J.JANNA OLMOS,G.M.POPOWICZ,G.DUBIN REVDAT 1 29-JAN-25 8RIB 0 JRNL AUTH F.MENEZES,V.NAPOLITANO,T.FROHLICH,S.RIOTON,J.D.JANNA OLMOS, JRNL AUTH 2 G.DUBIN,G.M.POPOWICZ JRNL TITL QUANTUM CHEMISTRY IN A POCKET JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 80.4 REMARK 3 NUMBER OF REFLECTIONS : 35511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.686 REMARK 3 FREE R VALUE TEST SET COUNT : 1664 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 13.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.4380 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 998 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37200 REMARK 3 B22 (A**2) : 1.87800 REMARK 3 B33 (A**2) : -0.57500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1225 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1237 ; 0.002 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1637 ; 1.833 ; 1.680 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2863 ; 1.526 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 146 ; 4.315 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 60 ;23.860 ;19.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 237 ;13.886 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1400 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 272 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 369 ; 0.279 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 78 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 616 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 139 ; 0.305 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.266 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 2 ; 0.522 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 545 ; 1.243 ; 1.034 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 544 ; 1.214 ; 1.029 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 695 ; 1.597 ; 1.549 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 696 ; 1.597 ; 1.553 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 680 ; 2.674 ; 1.445 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 677 ; 2.632 ; 1.439 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 939 ; 3.014 ; 2.003 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 940 ; 3.013 ; 2.006 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2459 ; 2.712 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 5 A 66 NULL REMARK 3 1 B 5 B 66 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 66 REMARK 3 RESIDUE RANGE : A 101 A 101 REMARK 3 RESIDUE RANGE : A 102 A 102 REMARK 3 RESIDUE RANGE : A 103 A 103 REMARK 3 RESIDUE RANGE : A 104 A 104 REMARK 3 RESIDUE RANGE : A 105 A 105 REMARK 3 RESIDUE RANGE : A 107 A 107 REMARK 3 RESIDUE RANGE : A 108 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4478 11.7174 10.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0188 REMARK 3 T33: 0.0020 T12: -0.0193 REMARK 3 T13: 0.0014 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.3129 L22: 2.9246 REMARK 3 L33: 1.9508 L12: -0.3865 REMARK 3 L13: 0.2324 L23: -0.2015 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: -0.1385 S13: -0.0340 REMARK 3 S21: 0.2122 S22: -0.0037 S23: 0.0118 REMARK 3 S31: 0.0847 S32: -0.0472 S33: -0.0419 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 66 REMARK 3 RESIDUE RANGE : B 101 B 101 REMARK 3 RESIDUE RANGE : B 102 B 102 REMARK 3 RESIDUE RANGE : B 103 B 103 REMARK 3 RESIDUE RANGE : B 108 B 108 REMARK 3 RESIDUE RANGE : B 109 B 109 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1549 9.6997 -10.5171 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0431 REMARK 3 T33: 0.0150 T12: 0.0263 REMARK 3 T13: 0.0189 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.0850 L22: 3.4213 REMARK 3 L33: 1.9609 L12: -0.2916 REMARK 3 L13: 0.7514 L23: -0.0715 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.2811 S13: 0.1278 REMARK 3 S21: -0.1886 S22: -0.0744 S23: -0.0317 REMARK 3 S31: -0.0411 S32: 0.1014 S33: 0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8RIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35511 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.126 REMARK 200 RESOLUTION RANGE LOW (A) : 46.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE DIBASIC REMARK 280 MONOHYDRATE 20% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.00450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.87100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.00450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.87100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 264 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 269 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 TRP A 1 REMARK 465 HIS A 2 REMARK 465 THR A 3 REMARK 465 HIS A 4 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 TRP B 1 REMARK 465 HIS B 2 REMARK 465 THR B 3 REMARK 465 HIS B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 25 HO1 EDO A 104 1.13 REMARK 500 HH21 ARG B 10 OE2 GLU B 44 1.39 REMARK 500 HE ARG B 10 OE1 GLU B 44 1.51 REMARK 500 HH12 ARG B 63 O HOH B 205 1.51 REMARK 500 H21 EDO A 102 O HOH A 207 1.52 REMARK 500 HD22 ASN B 59 O HOH B 204 1.56 REMARK 500 O HOH A 258 O HOH A 278 1.88 REMARK 500 O HOH A 204 O HOH A 214 1.91 REMARK 500 O HOH B 207 O HOH B 250 2.00 REMARK 500 O HOH B 257 O HOH B 268 2.03 REMARK 500 NH2 ARG B 10 OE2 GLU B 44 2.09 REMARK 500 O HOH A 211 O HOH A 265 2.09 REMARK 500 OE1 GLU A 47 O HOH A 202 2.13 REMARK 500 O6 MLI B 104 O HOH B 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE2 REMARK 620 2 SER B 12 O 116.5 REMARK 620 3 SER B 12 O 116.6 0.1 REMARK 620 4 SER B 12 OG 113.6 4.5 4.6 REMARK 620 5 GLU B 16 OE1 118.6 8.2 8.2 6.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 109 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 29 OG REMARK 620 2 GLU B 60 OE1 138.9 REMARK 620 3 EDO B 102 O1 80.4 114.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 66 OXT REMARK 620 2 LYS B 62 O 47.6 REMARK 620 3 ARG B 63 O 41.3 6.4 REMARK 620 4 LEU B 65 O 42.3 9.8 6.8 REMARK 620 5 MLI B 104 O9 47.0 5.6 7.1 5.6 REMARK 620 6 HOH B 214 O 53.8 8.0 13.1 12.1 6.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 28 OG1 REMARK 620 2 HOH B 248 O 66.9 REMARK 620 3 HOH B 248 O 58.6 18.7 REMARK 620 N 1 2 DBREF 8RIB A 2 66 UNP Q8IEW2 Q8IEW2_TRYBB 20 84 DBREF 8RIB B 2 66 UNP Q8IEW2 Q8IEW2_TRYBB 20 84 SEQADV 8RIB GLY A -2 UNP Q8IEW2 EXPRESSION TAG SEQADV 8RIB ALA A -1 UNP Q8IEW2 EXPRESSION TAG SEQADV 8RIB MET A 0 UNP Q8IEW2 EXPRESSION TAG SEQADV 8RIB TRP A 1 UNP Q8IEW2 EXPRESSION TAG SEQADV 8RIB GLY B -2 UNP Q8IEW2 EXPRESSION TAG SEQADV 8RIB ALA B -1 UNP Q8IEW2 EXPRESSION TAG SEQADV 8RIB MET B 0 UNP Q8IEW2 EXPRESSION TAG SEQADV 8RIB TRP B 1 UNP Q8IEW2 EXPRESSION TAG SEQRES 1 A 69 GLY ALA MET TRP HIS THR HIS SER GLU ARG GLU LYS ARG SEQRES 2 A 69 VAL SER ASN ALA VAL GLU PHE LEU LEU ASP SER ARG VAL SEQRES 3 A 69 ARG ARG THR PRO THR SER SER LYS VAL HIS PHE LEU LYS SEQRES 4 A 69 SER LYS GLY LEU SER ALA GLU GLU ILE CME GLU ALA PHE SEQRES 5 A 69 THR LYS VAL GLY GLN PRO LYS THR LEU ASN GLU ILE LYS SEQRES 6 A 69 ARG ILE LEU SER SEQRES 1 B 69 GLY ALA MET TRP HIS THR HIS SER GLU ARG GLU LYS ARG SEQRES 2 B 69 VAL SER ASN ALA VAL GLU PHE LEU LEU ASP SER ARG VAL SEQRES 3 B 69 ARG ARG THR PRO THR SER SER LYS VAL HIS PHE LEU LYS SEQRES 4 B 69 SER LYS GLY LEU SER ALA GLU GLU ILE CME GLU ALA PHE SEQRES 5 B 69 THR LYS VAL GLY GLN PRO LYS THR LEU ASN GLU ILE LYS SEQRES 6 B 69 ARG ILE LEU SER MODRES 8RIB CME A 46 CYS MODIFIED RESIDUE MODRES 8RIB CME B 46 CYS MODIFIED RESIDUE HET CME A 46 19 HET CME B 46 32 HET OJN A 101 70 HET EDO A 102 10 HET EDO A 103 10 HET EDO A 104 10 HET EDO A 105 10 HET EDO A 106 10 HET EDO A 107 10 HET MLI A 108 9 HET NA A 109 1 HET OJN B 101 70 HET EDO B 102 10 HET EDO B 103 10 HET MLI B 104 9 HET NA B 105 1 HET NA B 106 1 HET NA B 107 1 HET NA B 108 1 HET CL B 109 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM OJN 1-(2-AZANYLETHYL)-5-[(4-METHOXYNAPHTHALEN-1-YL)METHYL]- HETNAM 2 OJN ~{N}-[(4-METHYLSULFANYLPHENYL)METHYL]-6,7-DIHYDRO- HETNAM 3 OJN 4~{H}-PYRAZOLO[4,3-C]PYRIDINE-3-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM MLI MALONATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN OJN 1-(2-AZANYLETHYL)-5-[(4-METHOXYNAPHTHALEN-1-YL)METHYL]- HETSYN 2 OJN N-[(4-METHYLSULFANYLPHENYL)METHYL]-6,7-DIHYDRO-4H- HETSYN 3 OJN PYRAZOLO[4,3-C]PYRIDINE-3-CARBOXAMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 3 OJN 2(C29 H33 N5 O2 S) FORMUL 4 EDO 8(C2 H6 O2) FORMUL 10 MLI 2(C3 H2 O4 2-) FORMUL 11 NA 5(NA 1+) FORMUL 20 CL CL 1- FORMUL 21 HOH *172(H2 O) HELIX 1 AA1 SER A 5 ASP A 20 1 16 HELIX 2 AA2 ASP A 20 ARG A 25 1 6 HELIX 3 AA3 PRO A 27 LYS A 38 1 12 HELIX 4 AA4 SER A 41 VAL A 52 1 12 HELIX 5 AA5 THR A 57 SER A 66 1 10 HELIX 6 AA6 GLU B 6 ASP B 20 1 15 HELIX 7 AA7 ASP B 20 ARG B 25 1 6 HELIX 8 AA8 PRO B 27 LYS B 38 1 12 HELIX 9 AA9 SER B 41 VAL B 52 1 12 HELIX 10 AB1 THR B 57 LEU B 65 1 9 LINK C ILE A 45 N CME A 46 1555 1555 1.32 LINK C CME A 46 N GLU A 47 1555 1555 1.33 LINK C ILE B 45 N ACME B 46 1555 1555 1.32 LINK C ILE B 45 N BCME B 46 1555 1555 1.31 LINK C ACME B 46 N GLU B 47 1555 1555 1.33 LINK C BCME B 46 N GLU B 47 1555 1555 1.34 LINK OE2AGLU A 16 NA NA B 107 1555 2555 2.70 LINK OG SER A 29 NA NA A 109 1555 1555 3.10 LINK OXT SER A 66 NA NA B 105 1555 2655 2.43 LINK NA NA A 109 OE1 GLU B 60 1555 1555 2.96 LINK NA NA A 109 O1 EDO B 102 1555 1555 2.96 LINK O ASER B 12 NA NA B 107 1555 1555 2.93 LINK O BSER B 12 NA NA B 107 1555 1555 2.97 LINK OG ASER B 12 NA NA B 107 1555 1555 2.91 LINK OE1 GLU B 16 NA NA B 107 1555 1555 2.83 LINK OG1 THR B 28 NA NA B 108 1555 1555 3.09 LINK O LYS B 62 NA NA B 105 1555 1555 2.37 LINK O ARG B 63 NA NA B 105 1555 1555 2.74 LINK O LEU B 65 NA NA B 105 1555 1555 2.08 LINK O9 MLI B 104 NA NA B 105 1555 1555 2.99 LINK NA NA B 105 O HOH B 214 1555 1555 2.36 LINK NA NA B 106 O HOH B 263 1555 2554 2.25 LINK NA NA B 108 O AHOH B 248 1555 1555 2.00 LINK NA NA B 108 O BHOH B 248 1555 1555 3.12 CRYST1 56.009 45.742 52.616 90.00 118.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017854 0.000000 0.009843 0.00000 SCALE2 0.000000 0.021862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021703 0.00000 CONECT 465 2384 CONECT 733 750 CONECT 750 733 751 760 CONECT 751 750 752 758 761 CONECT 752 751 753 762 763 CONECT 753 752 754 CONECT 754 753 755 CONECT 755 754 756 764 765 CONECT 756 755 757 766 767 CONECT 757 756 768 CONECT 758 751 759 769 CONECT 759 758 CONECT 760 750 CONECT 761 751 CONECT 762 752 CONECT 763 752 CONECT 764 755 CONECT 765 755 CONECT 766 756 CONECT 767 756 CONECT 768 757 CONECT 769 758 CONECT 1276 2486 CONECT 1277 2486 CONECT 1280 2486 CONECT 1339 2486 CONECT 1549 2487 CONECT 1820 1837 1838 CONECT 1837 1820 1839 1853 CONECT 1838 1820 1840 1854 CONECT 1839 1837 1841 1849 1855 CONECT 1840 1838 1842 1850 1856 CONECT 1841 1839 1843 1857 1859 CONECT 1842 1840 1844 1858 1860 CONECT 1843 1841 1845 CONECT 1844 1842 CONECT 1845 1843 1846 CONECT 1846 1845 1847 1861 1862 CONECT 1847 1846 1848 1863 1864 CONECT 1848 1847 1865 CONECT 1849 1839 1851 1869 CONECT 1850 1840 1852 1869 CONECT 1851 1849 CONECT 1852 1850 CONECT 1853 1837 CONECT 1854 1838 CONECT 1855 1839 CONECT 1856 1840 CONECT 1857 1841 CONECT 1858 1842 CONECT 1859 1841 CONECT 1860 1842 CONECT 1861 1846 CONECT 1862 1846 CONECT 1863 1847 CONECT 1864 1847 CONECT 1865 1848 CONECT 1869 1849 1850 CONECT 2102 2384 CONECT 2151 2484 CONECT 2173 2484 CONECT 2216 2484 CONECT 2245 2262 2263 CONECT 2246 2248 2249 2250 CONECT 2247 2248 2264 2282 2283 CONECT 2248 2246 2247 2284 2285 CONECT 2249 2246 2265 2286 2287 CONECT 2250 2246 2251 2288 2289 CONECT 2251 2250 2253 2266 CONECT 2252 2255 2266 2267 CONECT 2253 2251 2268 2290 CONECT 2254 2269 2270 2291 CONECT 2255 2252 2270 2292 CONECT 2256 2257 2274 2293 2294 CONECT 2257 2256 2258 2260 CONECT 2258 2257 2275 2295 CONECT 2259 2275 2276 2280 CONECT 2260 2257 2276 2296 CONECT 2261 2278 2279 2297 2298 CONECT 2262 2245 2265 2273 CONECT 2263 2245 2264 2278 CONECT 2264 2247 2263 2265 CONECT 2265 2249 2262 2264 CONECT 2266 2251 2252 2269 CONECT 2267 2252 2268 2271 CONECT 2268 2253 2267 2299 CONECT 2269 2254 2266 2300 CONECT 2270 2254 2255 2301 CONECT 2271 2267 2272 CONECT 2272 2271 2302 2303 2304 CONECT 2273 2262 2274 2277 CONECT 2274 2256 2273 2305 CONECT 2275 2258 2259 2306 CONECT 2276 2259 2260 2307 CONECT 2277 2273 CONECT 2278 2261 2263 2308 2309 CONECT 2279 2261 2310 2311 CONECT 2280 2259 2281 CONECT 2281 2280 2312 2313 2314 CONECT 2282 2247 CONECT 2283 2247 CONECT 2284 2248 CONECT 2285 2248 CONECT 2286 2249 CONECT 2287 2249 CONECT 2288 2250 CONECT 2289 2250 CONECT 2290 2253 CONECT 2291 2254 CONECT 2292 2255 CONECT 2293 2256 CONECT 2294 2256 CONECT 2295 2258 CONECT 2296 2260 CONECT 2297 2261 CONECT 2298 2261 CONECT 2299 2268 CONECT 2300 2269 CONECT 2301 2270 CONECT 2302 2272 CONECT 2303 2272 CONECT 2304 2272 CONECT 2305 2274 CONECT 2306 2275 CONECT 2307 2276 CONECT 2308 2278 CONECT 2309 2278 CONECT 2310 2279 CONECT 2311 2279 CONECT 2312 2281 CONECT 2313 2281 CONECT 2314 2281 CONECT 2315 2316 2317 2319 2320 CONECT 2316 2315 2321 CONECT 2317 2315 2318 2322 2323 CONECT 2318 2317 2324 CONECT 2319 2315 CONECT 2320 2315 CONECT 2321 2316 CONECT 2322 2317 CONECT 2323 2317 CONECT 2324 2318 CONECT 2325 2326 2327 2329 2330 CONECT 2326 2325 2331 CONECT 2327 2325 2328 2332 2333 CONECT 2328 2327 2334 CONECT 2329 2325 CONECT 2330 2325 CONECT 2331 2326 CONECT 2332 2327 CONECT 2333 2327 CONECT 2334 2328 CONECT 2335 2336 2337 2339 2340 CONECT 2336 2335 2341 CONECT 2337 2335 2338 2342 2343 CONECT 2338 2337 2344 CONECT 2339 2335 CONECT 2340 2335 CONECT 2341 2336 CONECT 2342 2337 CONECT 2343 2337 CONECT 2344 2338 CONECT 2345 2346 2347 2349 2350 CONECT 2346 2345 2351 CONECT 2347 2345 2348 2352 2353 CONECT 2348 2347 2354 CONECT 2349 2345 CONECT 2350 2345 CONECT 2351 2346 CONECT 2352 2347 CONECT 2353 2347 CONECT 2354 2348 CONECT 2355 2356 2357 2359 2360 CONECT 2356 2355 2361 CONECT 2357 2355 2358 2362 2363 CONECT 2358 2357 2364 CONECT 2359 2355 CONECT 2360 2355 CONECT 2361 2356 CONECT 2362 2357 CONECT 2363 2357 CONECT 2364 2358 CONECT 2365 2366 2367 2369 2370 CONECT 2366 2365 2371 CONECT 2367 2365 2368 2372 2373 CONECT 2368 2367 2374 CONECT 2369 2365 CONECT 2370 2365 CONECT 2371 2366 CONECT 2372 2367 CONECT 2373 2367 CONECT 2374 2368 CONECT 2375 2376 2377 2382 2383 CONECT 2376 2375 2378 2379 CONECT 2377 2375 2380 2381 CONECT 2378 2376 CONECT 2379 2376 CONECT 2380 2377 CONECT 2381 2377 CONECT 2382 2375 CONECT 2383 2375 CONECT 2384 465 2102 2456 CONECT 2385 2402 2403 CONECT 2386 2388 2389 2390 CONECT 2387 2388 2404 2422 2423 CONECT 2388 2386 2387 2424 2425 CONECT 2389 2386 2405 2426 2427 CONECT 2390 2386 2391 2428 2429 CONECT 2391 2390 2393 2406 CONECT 2392 2395 2406 2407 CONECT 2393 2391 2408 2430 CONECT 2394 2409 2410 2431 CONECT 2395 2392 2410 2432 CONECT 2396 2397 2414 2433 2434 CONECT 2397 2396 2398 2400 CONECT 2398 2397 2415 2435 CONECT 2399 2415 2416 2420 CONECT 2400 2397 2416 2436 CONECT 2401 2418 2419 2437 2438 CONECT 2402 2385 2405 2413 CONECT 2403 2385 2404 2418 CONECT 2404 2387 2403 2405 CONECT 2405 2389 2402 2404 CONECT 2406 2391 2392 2409 CONECT 2407 2392 2408 2411 CONECT 2408 2393 2407 2439 CONECT 2409 2394 2406 2440 CONECT 2410 2394 2395 2441 CONECT 2411 2407 2412 CONECT 2412 2411 2442 2443 2444 CONECT 2413 2402 2414 2417 CONECT 2414 2396 2413 2445 CONECT 2415 2398 2399 2446 CONECT 2416 2399 2400 2447 CONECT 2417 2413 CONECT 2418 2401 2403 2448 2449 CONECT 2419 2401 2450 2451 CONECT 2420 2399 2421 CONECT 2421 2420 2452 2453 2454 CONECT 2422 2387 CONECT 2423 2387 CONECT 2424 2388 CONECT 2425 2388 CONECT 2426 2389 CONECT 2427 2389 CONECT 2428 2390 CONECT 2429 2390 CONECT 2430 2393 CONECT 2431 2394 CONECT 2432 2395 CONECT 2433 2396 CONECT 2434 2396 CONECT 2435 2398 CONECT 2436 2400 CONECT 2437 2401 CONECT 2438 2401 CONECT 2439 2408 CONECT 2440 2409 CONECT 2441 2410 CONECT 2442 2412 CONECT 2443 2412 CONECT 2444 2412 CONECT 2445 2414 CONECT 2446 2415 CONECT 2447 2416 CONECT 2448 2418 CONECT 2449 2418 CONECT 2450 2419 CONECT 2451 2419 CONECT 2452 2421 CONECT 2453 2421 CONECT 2454 2421 CONECT 2455 2456 2457 2459 2460 CONECT 2456 2384 2455 2461 CONECT 2457 2455 2458 2462 2463 CONECT 2458 2457 2464 CONECT 2459 2455 CONECT 2460 2455 CONECT 2461 2456 CONECT 2462 2457 CONECT 2463 2457 CONECT 2464 2458 CONECT 2465 2466 2467 2469 2470 CONECT 2466 2465 2471 CONECT 2467 2465 2468 2472 2473 CONECT 2468 2467 2474 CONECT 2469 2465 CONECT 2470 2465 CONECT 2471 2466 CONECT 2472 2467 CONECT 2473 2467 CONECT 2474 2468 CONECT 2475 2476 2477 2482 2483 CONECT 2476 2475 2478 2479 CONECT 2477 2475 2480 2481 CONECT 2478 2476 CONECT 2479 2476 CONECT 2480 2477 CONECT 2481 2477 2484 CONECT 2482 2475 CONECT 2483 2475 CONECT 2484 2151 2173 2216 2481 CONECT 2484 2603 CONECT 2486 1276 1277 1280 1339 CONECT 2487 1549 2637 2638 CONECT 2603 2484 CONECT 2637 2487 CONECT 2638 2487 MASTER 392 0 20 10 0 0 0 6 1296 2 308 12 END