HEADER HYDROLASE 18-DEC-23 8RIH TITLE CRYSTAL STRUCTURE OF THE SACCHAROMYCES CEREVISIAE URH1P RIBOSIDE TITLE 2 HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE RIBOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: URH1, SCY_1288; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEOSIDASE, NUCLEOSIDE HYDROLASE, RIBOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DEGANO,A.A.CARRILES REVDAT 2 24-JUL-24 8RIH 1 JRNL REVDAT 1 03-JUL-24 8RIH 0 JRNL AUTH A.A.CARRILES,L.MUZZOLINI,C.MINICI,P.TORNAGHI,M.PATRONE, JRNL AUTH 2 M.DEGANO JRNL TITL STRUCTURE-FUNCTION INSIGHTS INTO THE DUAL ROLE IN NUCLEOBASE JRNL TITL 2 AND NICOTINAMIDE METABOLISM AND A POSSIBLE USE IN CANCER JRNL TITL 3 GENE THERAPY OF THE URH1P RIBOSIDE HYDROLASE. JRNL REF INT J MOL SCI V. 25 2024 JRNL REFN ESSN 1422-0067 JRNL PMID 39000137 JRNL DOI 10.3390/IJMS25137032 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 121.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 56.1 REMARK 3 NUMBER OF REFLECTIONS : 13542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.272 REMARK 3 FREE R VALUE TEST SET COUNT : 714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 209 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 12.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03500 REMARK 3 B22 (A**2) : 0.03500 REMARK 3 B33 (A**2) : -0.11200 REMARK 3 B12 (A**2) : 0.01700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.487 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.290 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.740 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5389 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5007 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7307 ; 0.908 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11573 ; 0.295 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 661 ; 6.789 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 20 ; 4.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 864 ;14.069 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.041 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6263 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1205 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1200 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 70 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2729 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 138 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2662 ; 1.151 ; 1.055 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2659 ; 1.149 ; 1.055 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3313 ; 1.970 ; 2.366 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3314 ; 1.970 ; 2.366 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2727 ; 1.449 ; 1.185 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2728 ; 1.449 ; 1.186 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3994 ; 2.456 ; 2.665 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3995 ; 2.456 ; 2.666 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 340 NULL REMARK 3 1 A 4 A 340 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 46.4040 -51.9130 -0.1270 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.1836 REMARK 3 T33: 0.2234 T12: -0.0612 REMARK 3 T13: 0.0116 T23: -0.0440 REMARK 3 L TENSOR REMARK 3 L11: 1.6661 L22: 1.9817 REMARK 3 L33: 3.5649 L12: 0.3724 REMARK 3 L13: 0.2598 L23: -0.4757 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: -0.0211 S13: -0.0688 REMARK 3 S21: -0.0497 S22: -0.0486 S23: 0.1862 REMARK 3 S31: 0.3053 S32: -0.1933 S33: 0.0756 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 64.5630 -66.3570 37.1260 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.2419 REMARK 3 T33: 0.3210 T12: -0.0168 REMARK 3 T13: 0.0370 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 1.5327 L22: 2.2028 REMARK 3 L33: 5.2164 L12: 0.4203 REMARK 3 L13: 0.2296 L23: -0.3393 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.1024 S13: -0.3785 REMARK 3 S21: 0.0439 S22: 0.0505 S23: 0.1300 REMARK 3 S31: 0.5265 S32: -0.4291 S33: -0.0915 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8RIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1292135471. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87313 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : CRLS, MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13763 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 121.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRISHCL, 800 MM LICL, 32% PEG REMARK 280 4000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.67150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.67150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.67150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 LYS A 242 REMARK 465 ASP A 243 REMARK 465 MET A 244 REMARK 465 GLN A 245 REMARK 465 GLY A 246 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 LYS B 242 REMARK 465 ASP B 243 REMARK 465 MET B 244 REMARK 465 GLN B 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 112 CB CG CD OE1 OE2 REMARK 470 GLU B 112 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 49 O HOH A 501 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 91 42.41 -153.05 REMARK 500 ASN A 121 52.35 -114.26 REMARK 500 ALA A 132 166.43 -45.73 REMARK 500 ASN A 167 164.28 82.21 REMARK 500 ASP A 179 82.32 -157.88 REMARK 500 ASN A 223 45.57 -140.30 REMARK 500 LEU A 315 -57.76 -124.08 REMARK 500 ALA B 64 -44.75 -131.36 REMARK 500 LYS B 76 -50.39 -121.47 REMARK 500 LEU B 91 43.39 -153.07 REMARK 500 ASN B 121 52.84 -114.01 REMARK 500 ALA B 132 166.35 -47.60 REMARK 500 ASN B 167 164.41 82.32 REMARK 500 ASP B 179 82.50 -157.62 REMARK 500 ASN B 223 46.32 -140.21 REMARK 500 LEU B 315 -57.87 -124.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 ASP A 18 OD1 87.3 REMARK 620 3 ASP A 18 OD2 71.1 54.5 REMARK 620 4 THR A 130 O 104.0 149.9 102.4 REMARK 620 5 ASP A 255 OD2 142.0 67.3 71.2 88.0 REMARK 620 6 TRS A 401 O2 133.0 112.3 155.0 80.3 84.2 REMARK 620 7 HOH A 502 O 60.6 109.2 130.1 100.6 153.2 72.5 REMARK 620 8 HOH A 503 O 100.3 57.2 111.4 143.2 89.5 62.9 68.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 13 OD1 REMARK 620 2 ASP B 18 OD1 87.3 REMARK 620 3 ASP B 18 OD2 70.2 54.2 REMARK 620 4 THR B 130 O 102.4 148.5 100.6 REMARK 620 5 ASP B 255 OD2 141.2 67.9 71.0 87.1 REMARK 620 6 TRS B 401 O1 132.4 107.2 153.6 88.3 84.8 REMARK 620 7 HOH B 502 O 104.6 55.2 109.4 144.9 85.8 56.8 REMARK 620 8 HOH B 506 O 68.1 116.6 137.8 94.7 149.4 64.8 75.3 REMARK 620 N 1 2 3 4 5 6 7 DBREF 8RIH A 1 340 UNP A6ZZ00 A6ZZ00_YEAS7 1 340 DBREF 8RIH B 1 340 UNP A6ZZ00 A6ZZ00_YEAS7 1 340 SEQADV 8RIH GLY A -2 UNP A6ZZ00 EXPRESSION TAG SEQADV 8RIH SER A -1 UNP A6ZZ00 EXPRESSION TAG SEQADV 8RIH HIS A 0 UNP A6ZZ00 EXPRESSION TAG SEQADV 8RIH LEU A 231 UNP A6ZZ00 PHE 231 CONFLICT SEQADV 8RIH SER A 259 UNP A6ZZ00 LEU 259 CONFLICT SEQADV 8RIH ILE A 313 UNP A6ZZ00 VAL 313 CONFLICT SEQADV 8RIH GLY B -2 UNP A6ZZ00 EXPRESSION TAG SEQADV 8RIH SER B -1 UNP A6ZZ00 EXPRESSION TAG SEQADV 8RIH HIS B 0 UNP A6ZZ00 EXPRESSION TAG SEQADV 8RIH LEU B 231 UNP A6ZZ00 PHE 231 CONFLICT SEQADV 8RIH SER B 259 UNP A6ZZ00 LEU 259 CONFLICT SEQADV 8RIH ILE B 313 UNP A6ZZ00 VAL 313 CONFLICT SEQRES 1 A 343 GLY SER HIS MET THR VAL SER LYS ILE PRO ILE TRP LEU SEQRES 2 A 343 ASP CYS ASP PRO GLY HIS ASP ASP ALA ILE ALA ILE LEU SEQRES 3 A 343 LEU GLY CYS PHE HIS PRO ALA PHE ASN LEU LEU GLY ILE SEQRES 4 A 343 SER THR CYS PHE GLY ASN ALA PRO PRO GLU ASN THR ASP SEQRES 5 A 343 TYR ASN ALA ARG SER LEU LEU THR ALA MET GLY LYS ALA SEQRES 6 A 343 GLN ALA ILE PRO VAL TYR LYS GLY ALA GLN ARG PRO TRP SEQRES 7 A 343 LYS ARG GLU PRO HIS TYR ALA PRO ASP ILE HIS GLY ILE SEQRES 8 A 343 SER GLY LEU ASP GLY THR SER LEU LEU PRO LYS PRO THR SEQRES 9 A 343 PHE GLU ALA ARG THR ASP LYS THR TYR ILE GLU ALA ILE SEQRES 10 A 343 GLU GLU ALA ILE LEU ALA ASN ASN GLY GLU ILE SER PHE SEQRES 11 A 343 VAL SER THR GLY ALA LEU THR THR LEU ALA THR VAL PHE SEQRES 12 A 343 ARG CYS LYS PRO TYR LEU LYS LYS SER VAL LYS TYR ILE SEQRES 13 A 343 SER ILE MET GLY GLY GLY LEU HIS GLY LEU GLY ASN CYS SEQRES 14 A 343 ASN PRO ASN LEU SER ALA GLU PHE ASN VAL TRP ILE ASP SEQRES 15 A 343 PRO ASP ALA ALA ASN TYR ILE PHE ARG ASP PRO ASP VAL SEQRES 16 A 343 LYS ASP LYS CYS ILE VAL VAL PRO LEU ASN LEU THR HIS SEQRES 17 A 343 LYS ALA ILE ALA THR TYR LYS VAL ASN GLU MET ILE TYR SEQRES 18 A 343 ASN GLU LYS ASN ASN SER LYS LEU ARG GLU LEU PHE LEU SEQRES 19 A 343 GLU LEU PHE GLN PHE PHE ALA HIS THR TYR LYS ASP MET SEQRES 20 A 343 GLN GLY PHE GLU SER GLY PRO PRO ILE HIS ASP PRO VAL SEQRES 21 A 343 ALA SER MET PRO LEU LEU GLU PHE TYR GLY TRP ASP PRO SEQRES 22 A 343 SER SER ALA VAL GLY PHE ARG TYR LYS ARG MET ASP ILE SEQRES 23 A 343 SER CYS ILE ASP ASP VAL PHE ASN GLU ASN SER GLY LYS SEQRES 24 A 343 ILE ILE ILE GLU LYS GLU TYR PRO ASN ASP SER ASP VAL SEQRES 25 A 343 GLY THR ILE ILE GLY LEU ASP LEU ASN ILE GLN TYR PHE SEQRES 26 A 343 TRP ASP GLN ILE PHE GLU ALA LEU ASN ARG ALA ASP LYS SEQRES 27 A 343 MET SER THR ILE GLY SEQRES 1 B 343 GLY SER HIS MET THR VAL SER LYS ILE PRO ILE TRP LEU SEQRES 2 B 343 ASP CYS ASP PRO GLY HIS ASP ASP ALA ILE ALA ILE LEU SEQRES 3 B 343 LEU GLY CYS PHE HIS PRO ALA PHE ASN LEU LEU GLY ILE SEQRES 4 B 343 SER THR CYS PHE GLY ASN ALA PRO PRO GLU ASN THR ASP SEQRES 5 B 343 TYR ASN ALA ARG SER LEU LEU THR ALA MET GLY LYS ALA SEQRES 6 B 343 GLN ALA ILE PRO VAL TYR LYS GLY ALA GLN ARG PRO TRP SEQRES 7 B 343 LYS ARG GLU PRO HIS TYR ALA PRO ASP ILE HIS GLY ILE SEQRES 8 B 343 SER GLY LEU ASP GLY THR SER LEU LEU PRO LYS PRO THR SEQRES 9 B 343 PHE GLU ALA ARG THR ASP LYS THR TYR ILE GLU ALA ILE SEQRES 10 B 343 GLU GLU ALA ILE LEU ALA ASN ASN GLY GLU ILE SER PHE SEQRES 11 B 343 VAL SER THR GLY ALA LEU THR THR LEU ALA THR VAL PHE SEQRES 12 B 343 ARG CYS LYS PRO TYR LEU LYS LYS SER VAL LYS TYR ILE SEQRES 13 B 343 SER ILE MET GLY GLY GLY LEU HIS GLY LEU GLY ASN CYS SEQRES 14 B 343 ASN PRO ASN LEU SER ALA GLU PHE ASN VAL TRP ILE ASP SEQRES 15 B 343 PRO ASP ALA ALA ASN TYR ILE PHE ARG ASP PRO ASP VAL SEQRES 16 B 343 LYS ASP LYS CYS ILE VAL VAL PRO LEU ASN LEU THR HIS SEQRES 17 B 343 LYS ALA ILE ALA THR TYR LYS VAL ASN GLU MET ILE TYR SEQRES 18 B 343 ASN GLU LYS ASN ASN SER LYS LEU ARG GLU LEU PHE LEU SEQRES 19 B 343 GLU LEU PHE GLN PHE PHE ALA HIS THR TYR LYS ASP MET SEQRES 20 B 343 GLN GLY PHE GLU SER GLY PRO PRO ILE HIS ASP PRO VAL SEQRES 21 B 343 ALA SER MET PRO LEU LEU GLU PHE TYR GLY TRP ASP PRO SEQRES 22 B 343 SER SER ALA VAL GLY PHE ARG TYR LYS ARG MET ASP ILE SEQRES 23 B 343 SER CYS ILE ASP ASP VAL PHE ASN GLU ASN SER GLY LYS SEQRES 24 B 343 ILE ILE ILE GLU LYS GLU TYR PRO ASN ASP SER ASP VAL SEQRES 25 B 343 GLY THR ILE ILE GLY LEU ASP LEU ASN ILE GLN TYR PHE SEQRES 26 B 343 TRP ASP GLN ILE PHE GLU ALA LEU ASN ARG ALA ASP LYS SEQRES 27 B 343 MET SER THR ILE GLY HET CA A 400 1 HET TRS A 401 8 HET CA B 400 1 HET TRS B 401 8 HETNAM CA CALCIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 CA 2(CA 2+) FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 7 HOH *42(H2 O) HELIX 1 AA1 GLY A 15 HIS A 28 1 14 HELIX 2 AA2 PRO A 44 GLY A 60 1 17 HELIX 3 AA3 ALA A 82 GLY A 87 1 6 HELIX 4 AA4 THR A 109 ASN A 121 1 13 HELIX 5 AA5 LEU A 133 LYS A 143 1 11 HELIX 6 AA6 PRO A 144 VAL A 150 5 7 HELIX 7 AA7 GLY A 159 LEU A 163 5 5 HELIX 8 AA8 GLU A 173 ILE A 178 1 6 HELIX 9 AA9 ASP A 179 ASP A 189 1 11 HELIX 10 AB1 VAL A 192 ASP A 194 5 3 HELIX 11 AB2 PRO A 200 HIS A 205 1 6 HELIX 12 AB3 THR A 210 TYR A 218 1 9 HELIX 13 AB4 SER A 224 THR A 240 1 17 HELIX 14 AB5 HIS A 254 ALA A 258 5 5 HELIX 15 AB6 SER A 259 TYR A 266 1 8 HELIX 16 AB7 PRO A 270 GLY A 275 1 6 HELIX 17 AB8 ASN A 318 ASP A 334 1 17 HELIX 18 AB9 LYS A 335 SER A 337 5 3 HELIX 19 AC1 GLY B 15 HIS B 28 1 14 HELIX 20 AC2 PRO B 44 GLY B 60 1 17 HELIX 21 AC3 ALA B 82 GLY B 87 1 6 HELIX 22 AC4 THR B 109 ASN B 121 1 13 HELIX 23 AC5 LEU B 133 LYS B 143 1 11 HELIX 24 AC6 PRO B 144 VAL B 150 5 7 HELIX 25 AC7 GLY B 159 LEU B 163 5 5 HELIX 26 AC8 GLU B 173 ILE B 178 1 6 HELIX 27 AC9 ASP B 179 ARG B 188 1 10 HELIX 28 AD1 ASP B 189 ASP B 194 1 6 HELIX 29 AD2 PRO B 200 HIS B 205 1 6 HELIX 30 AD3 THR B 210 TYR B 218 1 9 HELIX 31 AD4 SER B 224 THR B 240 1 17 HELIX 32 AD5 HIS B 254 ALA B 258 5 5 HELIX 33 AD6 SER B 259 TYR B 266 1 8 HELIX 34 AD7 PRO B 270 GLY B 275 1 6 HELIX 35 AD8 ASN B 318 ASP B 334 1 17 HELIX 36 AD9 LYS B 335 SER B 337 5 3 SHEET 1 AA1 9 VAL A 67 LYS A 69 0 SHEET 2 AA1 9 PHE A 31 THR A 38 1 N ILE A 36 O TYR A 68 SHEET 3 AA1 9 ILE A 6 CYS A 12 1 N LEU A 10 O SER A 37 SHEET 4 AA1 9 SER A 126 SER A 129 1 O VAL A 128 N ASP A 11 SHEET 5 AA1 9 TYR A 152 MET A 156 1 O SER A 154 N PHE A 127 SHEET 6 AA1 9 CYS A 196 VAL A 199 1 O ILE A 197 N ILE A 155 SHEET 7 AA1 9 THR A 311 ASP A 316 1 O ILE A 312 N VAL A 198 SHEET 8 AA1 9 ARG A 277 CYS A 285 -1 N ARG A 277 O ASP A 316 SHEET 9 AA1 9 ILE A 297 TYR A 303 -1 O ILE A 298 N SER A 284 SHEET 1 AA2 9 VAL B 67 LYS B 69 0 SHEET 2 AA2 9 PHE B 31 THR B 38 1 N ILE B 36 O TYR B 68 SHEET 3 AA2 9 ILE B 6 CYS B 12 1 N LEU B 10 O SER B 37 SHEET 4 AA2 9 SER B 126 SER B 129 1 O VAL B 128 N ASP B 11 SHEET 5 AA2 9 TYR B 152 MET B 156 1 O SER B 154 N PHE B 127 SHEET 6 AA2 9 CYS B 196 VAL B 199 1 O ILE B 197 N ILE B 155 SHEET 7 AA2 9 THR B 311 ASP B 316 1 O ILE B 312 N VAL B 198 SHEET 8 AA2 9 ARG B 277 CYS B 285 -1 N ARG B 277 O ASP B 316 SHEET 9 AA2 9 ILE B 297 TYR B 303 -1 O ILE B 298 N SER B 284 SSBOND 1 CYS A 142 CYS B 142 1555 1555 2.02 LINK OD1 ASP A 13 CA CA A 400 1555 1555 2.41 LINK OD1 ASP A 18 CA CA A 400 1555 1555 2.43 LINK OD2 ASP A 18 CA CA A 400 1555 1555 2.40 LINK O THR A 130 CA CA A 400 1555 1555 2.41 LINK OD2 ASP A 255 CA CA A 400 1555 1555 2.43 LINK CA CA A 400 O2 TRS A 401 1555 1555 2.44 LINK CA CA A 400 O HOH A 502 1555 1555 2.42 LINK CA CA A 400 O HOH A 503 1555 1555 2.79 LINK OD1 ASP B 13 CA CA B 400 1555 1555 2.44 LINK OD1 ASP B 18 CA CA B 400 1555 1555 2.42 LINK OD2 ASP B 18 CA CA B 400 1555 1555 2.42 LINK O THR B 130 CA CA B 400 1555 1555 2.42 LINK OD2 ASP B 255 CA CA B 400 1555 1555 2.43 LINK CA CA B 400 O1 TRS B 401 1555 1555 2.43 LINK CA CA B 400 O HOH B 502 1555 1555 2.43 LINK CA CA B 400 O HOH B 506 1555 1555 2.63 CISPEP 1 PRO A 14 GLY A 15 0 -10.38 CISPEP 2 PRO B 14 GLY B 15 0 -9.79 CRYST1 140.284 140.284 81.343 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007128 0.004116 0.000000 0.00000 SCALE2 0.000000 0.008231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012294 0.00000