data_8RK4 # _entry.id 8RK4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8RK4 pdb_00008rk4 10.2210/pdb8rk4/pdb WWPDB D_1292135455 ? ? EMDB EMD-19259 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-08-14 2 'Structure model' 1 1 2024-08-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8RK4 _pdbx_database_status.recvd_initial_deposition_date 2023-12-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Receptor binding protein of bacteriophage JBD30 computed with C3 symmetry' _pdbx_database_related.db_id EMD-19259 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email pavel.plevka@ceitec.muni.cz _pdbx_contact_author.name_first Pavel _pdbx_contact_author.name_last Plevka _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4215-3315 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Valentova, L.' 1 0000-0003-0160-2014 'Fuzik, T.' 2 0000-0002-1190-0210 'Plevka, P.' 3 0000-0003-4215-3315 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Embo J.' EMJODG 0897 1460-2075 ? ? ? ? ? ? 'Structure and replication of Pseudomonas aeruginosa phage JBD30.' 2024 ? 10.1038/s44318-024-00195-1 39143239 ? ? ? ? ? ? ? ? ? UK ? ? 1 'Embo J.' EMJODG 0897 1460-2075 ? ? ? ? ? ? 'Structure and replication of Pseudomonas aeruginosa phage JBD30' 2024 ? 10.1038/s44318-024-0 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valentova, L.' 1 0000-0003-0160-2014 primary 'Fuzik, T.' 2 0000-0002-1190-0210 primary 'Novacek, J.' 3 0000-0003-4013-3898 primary 'Hlavenkova, Z.' 4 0009-0005-3242-2237 primary 'Pospisil, J.' 5 0000-0002-8679-677X primary 'Plevka, P.' 6 0000-0003-4215-3315 1 'Valentova, L.' 7 0000-0003-0160-2014 1 'Plevka, P.' 8 0000-0003-4215-3315 1 'Fuzik, T.' 9 0000-0002-1190-0210 1 'Novacek, J.' 10 0000-0003-4013-3898 1 'Pospisil, J.' 11 0000-0002-8679-677X # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'DUF2793 domain-containing protein' _entity.formula_weight 40578.426 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Receptor binding protein' # _entity_name_com.entity_id 1 _entity_name_com.name 'Receptor binding protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MTLYMGPNTGLLINGLPGEGHYSDLIRMWRWDDFLRQPVVKGRVATLPTTGQAEGDTYIFTGSGSNQNRLARWWATGATT AIWEYMPPRLGWRVQVANETTPSGQVKTYEYSGTAWVELVGGMSDAPSDGKAYARESGAWTELGSAAKSALNVLPFMNLM PDMGRFAGTAANPLATMFTTSWTPSSFLNGWNGATVADGGKFAFDNSTNGGAGPALNARVQALLAAMGRTWTSVSRYGVE FFTAVLTAGSQTTTGSAGADGVTRYLCCSNGSKTVFNAGGWATVVMWLRVESGSAHISSAPYTTHRLWINGAVAAPGVVL PANQWVHLRFSMQSYNGYDNACPYIYASAGAQIAFACPAWFGGLVDPGIHVAPILTINGASA ; _entity_poly.pdbx_seq_one_letter_code_can ;MTLYMGPNTGLLINGLPGEGHYSDLIRMWRWDDFLRQPVVKGRVATLPTTGQAEGDTYIFTGSGSNQNRLARWWATGATT AIWEYMPPRLGWRVQVANETTPSGQVKTYEYSGTAWVELVGGMSDAPSDGKAYARESGAWTELGSAAKSALNVLPFMNLM PDMGRFAGTAANPLATMFTTSWTPSSFLNGWNGATVADGGKFAFDNSTNGGAGPALNARVQALLAAMGRTWTSVSRYGVE FFTAVLTAGSQTTTGSAGADGVTRYLCCSNGSKTVFNAGGWATVVMWLRVESGSAHISSAPYTTHRLWINGAVAAPGVVL PANQWVHLRFSMQSYNGYDNACPYIYASAGAQIAFACPAWFGGLVDPGIHVAPILTINGASA ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 THR n 1 3 LEU n 1 4 TYR n 1 5 MET n 1 6 GLY n 1 7 PRO n 1 8 ASN n 1 9 THR n 1 10 GLY n 1 11 LEU n 1 12 LEU n 1 13 ILE n 1 14 ASN n 1 15 GLY n 1 16 LEU n 1 17 PRO n 1 18 GLY n 1 19 GLU n 1 20 GLY n 1 21 HIS n 1 22 TYR n 1 23 SER n 1 24 ASP n 1 25 LEU n 1 26 ILE n 1 27 ARG n 1 28 MET n 1 29 TRP n 1 30 ARG n 1 31 TRP n 1 32 ASP n 1 33 ASP n 1 34 PHE n 1 35 LEU n 1 36 ARG n 1 37 GLN n 1 38 PRO n 1 39 VAL n 1 40 VAL n 1 41 LYS n 1 42 GLY n 1 43 ARG n 1 44 VAL n 1 45 ALA n 1 46 THR n 1 47 LEU n 1 48 PRO n 1 49 THR n 1 50 THR n 1 51 GLY n 1 52 GLN n 1 53 ALA n 1 54 GLU n 1 55 GLY n 1 56 ASP n 1 57 THR n 1 58 TYR n 1 59 ILE n 1 60 PHE n 1 61 THR n 1 62 GLY n 1 63 SER n 1 64 GLY n 1 65 SER n 1 66 ASN n 1 67 GLN n 1 68 ASN n 1 69 ARG n 1 70 LEU n 1 71 ALA n 1 72 ARG n 1 73 TRP n 1 74 TRP n 1 75 ALA n 1 76 THR n 1 77 GLY n 1 78 ALA n 1 79 THR n 1 80 THR n 1 81 ALA n 1 82 ILE n 1 83 TRP n 1 84 GLU n 1 85 TYR n 1 86 MET n 1 87 PRO n 1 88 PRO n 1 89 ARG n 1 90 LEU n 1 91 GLY n 1 92 TRP n 1 93 ARG n 1 94 VAL n 1 95 GLN n 1 96 VAL n 1 97 ALA n 1 98 ASN n 1 99 GLU n 1 100 THR n 1 101 THR n 1 102 PRO n 1 103 SER n 1 104 GLY n 1 105 GLN n 1 106 VAL n 1 107 LYS n 1 108 THR n 1 109 TYR n 1 110 GLU n 1 111 TYR n 1 112 SER n 1 113 GLY n 1 114 THR n 1 115 ALA n 1 116 TRP n 1 117 VAL n 1 118 GLU n 1 119 LEU n 1 120 VAL n 1 121 GLY n 1 122 GLY n 1 123 MET n 1 124 SER n 1 125 ASP n 1 126 ALA n 1 127 PRO n 1 128 SER n 1 129 ASP n 1 130 GLY n 1 131 LYS n 1 132 ALA n 1 133 TYR n 1 134 ALA n 1 135 ARG n 1 136 GLU n 1 137 SER n 1 138 GLY n 1 139 ALA n 1 140 TRP n 1 141 THR n 1 142 GLU n 1 143 LEU n 1 144 GLY n 1 145 SER n 1 146 ALA n 1 147 ALA n 1 148 LYS n 1 149 SER n 1 150 ALA n 1 151 LEU n 1 152 ASN n 1 153 VAL n 1 154 LEU n 1 155 PRO n 1 156 PHE n 1 157 MET n 1 158 ASN n 1 159 LEU n 1 160 MET n 1 161 PRO n 1 162 ASP n 1 163 MET n 1 164 GLY n 1 165 ARG n 1 166 PHE n 1 167 ALA n 1 168 GLY n 1 169 THR n 1 170 ALA n 1 171 ALA n 1 172 ASN n 1 173 PRO n 1 174 LEU n 1 175 ALA n 1 176 THR n 1 177 MET n 1 178 PHE n 1 179 THR n 1 180 THR n 1 181 SER n 1 182 TRP n 1 183 THR n 1 184 PRO n 1 185 SER n 1 186 SER n 1 187 PHE n 1 188 LEU n 1 189 ASN n 1 190 GLY n 1 191 TRP n 1 192 ASN n 1 193 GLY n 1 194 ALA n 1 195 THR n 1 196 VAL n 1 197 ALA n 1 198 ASP n 1 199 GLY n 1 200 GLY n 1 201 LYS n 1 202 PHE n 1 203 ALA n 1 204 PHE n 1 205 ASP n 1 206 ASN n 1 207 SER n 1 208 THR n 1 209 ASN n 1 210 GLY n 1 211 GLY n 1 212 ALA n 1 213 GLY n 1 214 PRO n 1 215 ALA n 1 216 LEU n 1 217 ASN n 1 218 ALA n 1 219 ARG n 1 220 VAL n 1 221 GLN n 1 222 ALA n 1 223 LEU n 1 224 LEU n 1 225 ALA n 1 226 ALA n 1 227 MET n 1 228 GLY n 1 229 ARG n 1 230 THR n 1 231 TRP n 1 232 THR n 1 233 SER n 1 234 VAL n 1 235 SER n 1 236 ARG n 1 237 TYR n 1 238 GLY n 1 239 VAL n 1 240 GLU n 1 241 PHE n 1 242 PHE n 1 243 THR n 1 244 ALA n 1 245 VAL n 1 246 LEU n 1 247 THR n 1 248 ALA n 1 249 GLY n 1 250 SER n 1 251 GLN n 1 252 THR n 1 253 THR n 1 254 THR n 1 255 GLY n 1 256 SER n 1 257 ALA n 1 258 GLY n 1 259 ALA n 1 260 ASP n 1 261 GLY n 1 262 VAL n 1 263 THR n 1 264 ARG n 1 265 TYR n 1 266 LEU n 1 267 CYS n 1 268 CYS n 1 269 SER n 1 270 ASN n 1 271 GLY n 1 272 SER n 1 273 LYS n 1 274 THR n 1 275 VAL n 1 276 PHE n 1 277 ASN n 1 278 ALA n 1 279 GLY n 1 280 GLY n 1 281 TRP n 1 282 ALA n 1 283 THR n 1 284 VAL n 1 285 VAL n 1 286 MET n 1 287 TRP n 1 288 LEU n 1 289 ARG n 1 290 VAL n 1 291 GLU n 1 292 SER n 1 293 GLY n 1 294 SER n 1 295 ALA n 1 296 HIS n 1 297 ILE n 1 298 SER n 1 299 SER n 1 300 ALA n 1 301 PRO n 1 302 TYR n 1 303 THR n 1 304 THR n 1 305 HIS n 1 306 ARG n 1 307 LEU n 1 308 TRP n 1 309 ILE n 1 310 ASN n 1 311 GLY n 1 312 ALA n 1 313 VAL n 1 314 ALA n 1 315 ALA n 1 316 PRO n 1 317 GLY n 1 318 VAL n 1 319 VAL n 1 320 LEU n 1 321 PRO n 1 322 ALA n 1 323 ASN n 1 324 GLN n 1 325 TRP n 1 326 VAL n 1 327 HIS n 1 328 LEU n 1 329 ARG n 1 330 PHE n 1 331 SER n 1 332 MET n 1 333 GLN n 1 334 SER n 1 335 TYR n 1 336 ASN n 1 337 GLY n 1 338 TYR n 1 339 ASP n 1 340 ASN n 1 341 ALA n 1 342 CYS n 1 343 PRO n 1 344 TYR n 1 345 ILE n 1 346 TYR n 1 347 ALA n 1 348 SER n 1 349 ALA n 1 350 GLY n 1 351 ALA n 1 352 GLN n 1 353 ILE n 1 354 ALA n 1 355 PHE n 1 356 ALA n 1 357 CYS n 1 358 PRO n 1 359 ALA n 1 360 TRP n 1 361 PHE n 1 362 GLY n 1 363 GLY n 1 364 LEU n 1 365 VAL n 1 366 ASP n 1 367 PRO n 1 368 GLY n 1 369 ILE n 1 370 HIS n 1 371 VAL n 1 372 ALA n 1 373 PRO n 1 374 ILE n 1 375 LEU n 1 376 THR n 1 377 ILE n 1 378 ASN n 1 379 GLY n 1 380 ALA n 1 381 SER n 1 382 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 382 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Pseudomonas phage JBD30' _entity_src_nat.pdbx_ncbi_taxonomy_id 1223260 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? B . n A 1 2 THR 2 2 ? ? ? B . n A 1 3 LEU 3 3 ? ? ? B . n A 1 4 TYR 4 4 ? ? ? B . n A 1 5 MET 5 5 ? ? ? B . n A 1 6 GLY 6 6 ? ? ? B . n A 1 7 PRO 7 7 ? ? ? B . n A 1 8 ASN 8 8 ? ? ? B . n A 1 9 THR 9 9 ? ? ? B . n A 1 10 GLY 10 10 10 GLY GLY B . n A 1 11 LEU 11 11 11 LEU LEU B . n A 1 12 LEU 12 12 12 LEU LEU B . n A 1 13 ILE 13 13 13 ILE ILE B . n A 1 14 ASN 14 14 14 ASN ASN B . n A 1 15 GLY 15 15 15 GLY GLY B . n A 1 16 LEU 16 16 16 LEU LEU B . n A 1 17 PRO 17 17 17 PRO PRO B . n A 1 18 GLY 18 18 18 GLY GLY B . n A 1 19 GLU 19 19 19 GLU GLU B . n A 1 20 GLY 20 20 20 GLY GLY B . n A 1 21 HIS 21 21 21 HIS HIS B . n A 1 22 TYR 22 22 22 TYR TYR B . n A 1 23 SER 23 23 23 SER SER B . n A 1 24 ASP 24 24 24 ASP ASP B . n A 1 25 LEU 25 25 25 LEU LEU B . n A 1 26 ILE 26 26 26 ILE ILE B . n A 1 27 ARG 27 27 27 ARG ARG B . n A 1 28 MET 28 28 28 MET MET B . n A 1 29 TRP 29 29 29 TRP TRP B . n A 1 30 ARG 30 30 30 ARG ARG B . n A 1 31 TRP 31 31 31 TRP TRP B . n A 1 32 ASP 32 32 32 ASP ASP B . n A 1 33 ASP 33 33 33 ASP ASP B . n A 1 34 PHE 34 34 34 PHE PHE B . n A 1 35 LEU 35 35 35 LEU LEU B . n A 1 36 ARG 36 36 36 ARG ARG B . n A 1 37 GLN 37 37 37 GLN GLN B . n A 1 38 PRO 38 38 38 PRO PRO B . n A 1 39 VAL 39 39 39 VAL VAL B . n A 1 40 VAL 40 40 40 VAL VAL B . n A 1 41 LYS 41 41 41 LYS LYS B . n A 1 42 GLY 42 42 42 GLY GLY B . n A 1 43 ARG 43 43 43 ARG ARG B . n A 1 44 VAL 44 44 44 VAL VAL B . n A 1 45 ALA 45 45 45 ALA ALA B . n A 1 46 THR 46 46 46 THR THR B . n A 1 47 LEU 47 47 47 LEU LEU B . n A 1 48 PRO 48 48 48 PRO PRO B . n A 1 49 THR 49 49 49 THR THR B . n A 1 50 THR 50 50 50 THR THR B . n A 1 51 GLY 51 51 51 GLY GLY B . n A 1 52 GLN 52 52 52 GLN GLN B . n A 1 53 ALA 53 53 53 ALA ALA B . n A 1 54 GLU 54 54 54 GLU GLU B . n A 1 55 GLY 55 55 55 GLY GLY B . n A 1 56 ASP 56 56 56 ASP ASP B . n A 1 57 THR 57 57 57 THR THR B . n A 1 58 TYR 58 58 58 TYR TYR B . n A 1 59 ILE 59 59 59 ILE ILE B . n A 1 60 PHE 60 60 60 PHE PHE B . n A 1 61 THR 61 61 61 THR THR B . n A 1 62 GLY 62 62 62 GLY GLY B . n A 1 63 SER 63 63 63 SER SER B . n A 1 64 GLY 64 64 64 GLY GLY B . n A 1 65 SER 65 65 65 SER SER B . n A 1 66 ASN 66 66 66 ASN ASN B . n A 1 67 GLN 67 67 67 GLN GLN B . n A 1 68 ASN 68 68 68 ASN ASN B . n A 1 69 ARG 69 69 69 ARG ARG B . n A 1 70 LEU 70 70 70 LEU LEU B . n A 1 71 ALA 71 71 71 ALA ALA B . n A 1 72 ARG 72 72 72 ARG ARG B . n A 1 73 TRP 73 73 73 TRP TRP B . n A 1 74 TRP 74 74 74 TRP TRP B . n A 1 75 ALA 75 75 75 ALA ALA B . n A 1 76 THR 76 76 76 THR THR B . n A 1 77 GLY 77 77 77 GLY GLY B . n A 1 78 ALA 78 78 78 ALA ALA B . n A 1 79 THR 79 79 79 THR THR B . n A 1 80 THR 80 80 80 THR THR B . n A 1 81 ALA 81 81 81 ALA ALA B . n A 1 82 ILE 82 82 82 ILE ILE B . n A 1 83 TRP 83 83 83 TRP TRP B . n A 1 84 GLU 84 84 84 GLU GLU B . n A 1 85 TYR 85 85 85 TYR TYR B . n A 1 86 MET 86 86 86 MET MET B . n A 1 87 PRO 87 87 87 PRO PRO B . n A 1 88 PRO 88 88 88 PRO PRO B . n A 1 89 ARG 89 89 89 ARG ARG B . n A 1 90 LEU 90 90 90 LEU LEU B . n A 1 91 GLY 91 91 91 GLY GLY B . n A 1 92 TRP 92 92 92 TRP TRP B . n A 1 93 ARG 93 93 93 ARG ARG B . n A 1 94 VAL 94 94 94 VAL VAL B . n A 1 95 GLN 95 95 95 GLN GLN B . n A 1 96 VAL 96 96 96 VAL VAL B . n A 1 97 ALA 97 97 97 ALA ALA B . n A 1 98 ASN 98 98 98 ASN ASN B . n A 1 99 GLU 99 99 99 GLU GLU B . n A 1 100 THR 100 100 100 THR THR B . n A 1 101 THR 101 101 101 THR THR B . n A 1 102 PRO 102 102 102 PRO PRO B . n A 1 103 SER 103 103 103 SER SER B . n A 1 104 GLY 104 104 104 GLY GLY B . n A 1 105 GLN 105 105 105 GLN GLN B . n A 1 106 VAL 106 106 106 VAL VAL B . n A 1 107 LYS 107 107 107 LYS LYS B . n A 1 108 THR 108 108 108 THR THR B . n A 1 109 TYR 109 109 109 TYR TYR B . n A 1 110 GLU 110 110 110 GLU GLU B . n A 1 111 TYR 111 111 111 TYR TYR B . n A 1 112 SER 112 112 112 SER SER B . n A 1 113 GLY 113 113 113 GLY GLY B . n A 1 114 THR 114 114 114 THR THR B . n A 1 115 ALA 115 115 115 ALA ALA B . n A 1 116 TRP 116 116 116 TRP TRP B . n A 1 117 VAL 117 117 117 VAL VAL B . n A 1 118 GLU 118 118 118 GLU GLU B . n A 1 119 LEU 119 119 119 LEU LEU B . n A 1 120 VAL 120 120 120 VAL VAL B . n A 1 121 GLY 121 121 121 GLY GLY B . n A 1 122 GLY 122 122 122 GLY GLY B . n A 1 123 MET 123 123 123 MET MET B . n A 1 124 SER 124 124 124 SER SER B . n A 1 125 ASP 125 125 125 ASP ASP B . n A 1 126 ALA 126 126 126 ALA ALA B . n A 1 127 PRO 127 127 127 PRO PRO B . n A 1 128 SER 128 128 128 SER SER B . n A 1 129 ASP 129 129 129 ASP ASP B . n A 1 130 GLY 130 130 130 GLY GLY B . n A 1 131 LYS 131 131 131 LYS LYS B . n A 1 132 ALA 132 132 132 ALA ALA B . n A 1 133 TYR 133 133 133 TYR TYR B . n A 1 134 ALA 134 134 134 ALA ALA B . n A 1 135 ARG 135 135 135 ARG ARG B . n A 1 136 GLU 136 136 136 GLU GLU B . n A 1 137 SER 137 137 137 SER SER B . n A 1 138 GLY 138 138 138 GLY GLY B . n A 1 139 ALA 139 139 139 ALA ALA B . n A 1 140 TRP 140 140 140 TRP TRP B . n A 1 141 THR 141 141 141 THR THR B . n A 1 142 GLU 142 142 142 GLU GLU B . n A 1 143 LEU 143 143 143 LEU LEU B . n A 1 144 GLY 144 144 144 GLY GLY B . n A 1 145 SER 145 145 145 SER SER B . n A 1 146 ALA 146 146 146 ALA ALA B . n A 1 147 ALA 147 147 147 ALA ALA B . n A 1 148 LYS 148 148 148 LYS LYS B . n A 1 149 SER 149 149 149 SER SER B . n A 1 150 ALA 150 150 150 ALA ALA B . n A 1 151 LEU 151 151 151 LEU LEU B . n A 1 152 ASN 152 152 152 ASN ASN B . n A 1 153 VAL 153 153 153 VAL VAL B . n A 1 154 LEU 154 154 154 LEU LEU B . n A 1 155 PRO 155 155 155 PRO PRO B . n A 1 156 PHE 156 156 156 PHE PHE B . n A 1 157 MET 157 157 157 MET MET B . n A 1 158 ASN 158 158 158 ASN ASN B . n A 1 159 LEU 159 159 159 LEU LEU B . n A 1 160 MET 160 160 160 MET MET B . n A 1 161 PRO 161 161 161 PRO PRO B . n A 1 162 ASP 162 162 162 ASP ASP B . n A 1 163 MET 163 163 163 MET MET B . n A 1 164 GLY 164 164 164 GLY GLY B . n A 1 165 ARG 165 165 165 ARG ARG B . n A 1 166 PHE 166 166 166 PHE PHE B . n A 1 167 ALA 167 167 167 ALA ALA B . n A 1 168 GLY 168 168 168 GLY GLY B . n A 1 169 THR 169 169 169 THR THR B . n A 1 170 ALA 170 170 170 ALA ALA B . n A 1 171 ALA 171 171 171 ALA ALA B . n A 1 172 ASN 172 172 172 ASN ASN B . n A 1 173 PRO 173 173 173 PRO PRO B . n A 1 174 LEU 174 174 174 LEU LEU B . n A 1 175 ALA 175 175 175 ALA ALA B . n A 1 176 THR 176 176 176 THR THR B . n A 1 177 MET 177 177 177 MET MET B . n A 1 178 PHE 178 178 178 PHE PHE B . n A 1 179 THR 179 179 179 THR THR B . n A 1 180 THR 180 180 180 THR THR B . n A 1 181 SER 181 181 181 SER SER B . n A 1 182 TRP 182 182 182 TRP TRP B . n A 1 183 THR 183 183 183 THR THR B . n A 1 184 PRO 184 184 184 PRO PRO B . n A 1 185 SER 185 185 185 SER SER B . n A 1 186 SER 186 186 186 SER SER B . n A 1 187 PHE 187 187 187 PHE PHE B . n A 1 188 LEU 188 188 188 LEU LEU B . n A 1 189 ASN 189 189 189 ASN ASN B . n A 1 190 GLY 190 190 190 GLY GLY B . n A 1 191 TRP 191 191 191 TRP TRP B . n A 1 192 ASN 192 192 192 ASN ASN B . n A 1 193 GLY 193 193 193 GLY GLY B . n A 1 194 ALA 194 194 194 ALA ALA B . n A 1 195 THR 195 195 195 THR THR B . n A 1 196 VAL 196 196 196 VAL VAL B . n A 1 197 ALA 197 197 197 ALA ALA B . n A 1 198 ASP 198 198 198 ASP ASP B . n A 1 199 GLY 199 199 199 GLY GLY B . n A 1 200 GLY 200 200 200 GLY GLY B . n A 1 201 LYS 201 201 201 LYS LYS B . n A 1 202 PHE 202 202 202 PHE PHE B . n A 1 203 ALA 203 203 203 ALA ALA B . n A 1 204 PHE 204 204 204 PHE PHE B . n A 1 205 ASP 205 205 205 ASP ASP B . n A 1 206 ASN 206 206 206 ASN ASN B . n A 1 207 SER 207 207 207 SER SER B . n A 1 208 THR 208 208 208 THR THR B . n A 1 209 ASN 209 209 209 ASN ASN B . n A 1 210 GLY 210 210 210 GLY GLY B . n A 1 211 GLY 211 211 211 GLY GLY B . n A 1 212 ALA 212 212 212 ALA ALA B . n A 1 213 GLY 213 213 213 GLY GLY B . n A 1 214 PRO 214 214 214 PRO PRO B . n A 1 215 ALA 215 215 215 ALA ALA B . n A 1 216 LEU 216 216 216 LEU LEU B . n A 1 217 ASN 217 217 217 ASN ASN B . n A 1 218 ALA 218 218 218 ALA ALA B . n A 1 219 ARG 219 219 219 ARG ARG B . n A 1 220 VAL 220 220 220 VAL VAL B . n A 1 221 GLN 221 221 221 GLN GLN B . n A 1 222 ALA 222 222 222 ALA ALA B . n A 1 223 LEU 223 223 223 LEU LEU B . n A 1 224 LEU 224 224 224 LEU LEU B . n A 1 225 ALA 225 225 225 ALA ALA B . n A 1 226 ALA 226 226 226 ALA ALA B . n A 1 227 MET 227 227 227 MET MET B . n A 1 228 GLY 228 228 228 GLY GLY B . n A 1 229 ARG 229 229 229 ARG ARG B . n A 1 230 THR 230 230 230 THR THR B . n A 1 231 TRP 231 231 231 TRP TRP B . n A 1 232 THR 232 232 232 THR THR B . n A 1 233 SER 233 233 233 SER SER B . n A 1 234 VAL 234 234 234 VAL VAL B . n A 1 235 SER 235 235 235 SER SER B . n A 1 236 ARG 236 236 236 ARG ARG B . n A 1 237 TYR 237 237 237 TYR TYR B . n A 1 238 GLY 238 238 238 GLY GLY B . n A 1 239 VAL 239 239 239 VAL VAL B . n A 1 240 GLU 240 240 240 GLU GLU B . n A 1 241 PHE 241 241 241 PHE PHE B . n A 1 242 PHE 242 242 242 PHE PHE B . n A 1 243 THR 243 243 243 THR THR B . n A 1 244 ALA 244 244 244 ALA ALA B . n A 1 245 VAL 245 245 245 VAL VAL B . n A 1 246 LEU 246 246 246 LEU LEU B . n A 1 247 THR 247 247 247 THR THR B . n A 1 248 ALA 248 248 248 ALA ALA B . n A 1 249 GLY 249 249 249 GLY GLY B . n A 1 250 SER 250 250 250 SER SER B . n A 1 251 GLN 251 251 251 GLN GLN B . n A 1 252 THR 252 252 252 THR THR B . n A 1 253 THR 253 253 253 THR THR B . n A 1 254 THR 254 254 254 THR THR B . n A 1 255 GLY 255 255 255 GLY GLY B . n A 1 256 SER 256 256 256 SER SER B . n A 1 257 ALA 257 257 257 ALA ALA B . n A 1 258 GLY 258 258 258 GLY GLY B . n A 1 259 ALA 259 259 259 ALA ALA B . n A 1 260 ASP 260 260 260 ASP ASP B . n A 1 261 GLY 261 261 261 GLY GLY B . n A 1 262 VAL 262 262 262 VAL VAL B . n A 1 263 THR 263 263 263 THR THR B . n A 1 264 ARG 264 264 264 ARG ARG B . n A 1 265 TYR 265 265 265 TYR TYR B . n A 1 266 LEU 266 266 266 LEU LEU B . n A 1 267 CYS 267 267 267 CYS CYS B . n A 1 268 CYS 268 268 268 CYS CYS B . n A 1 269 SER 269 269 269 SER SER B . n A 1 270 ASN 270 270 270 ASN ASN B . n A 1 271 GLY 271 271 271 GLY GLY B . n A 1 272 SER 272 272 272 SER SER B . n A 1 273 LYS 273 273 273 LYS LYS B . n A 1 274 THR 274 274 274 THR THR B . n A 1 275 VAL 275 275 275 VAL VAL B . n A 1 276 PHE 276 276 276 PHE PHE B . n A 1 277 ASN 277 277 277 ASN ASN B . n A 1 278 ALA 278 278 278 ALA ALA B . n A 1 279 GLY 279 279 279 GLY GLY B . n A 1 280 GLY 280 280 280 GLY GLY B . n A 1 281 TRP 281 281 281 TRP TRP B . n A 1 282 ALA 282 282 282 ALA ALA B . n A 1 283 THR 283 283 283 THR THR B . n A 1 284 VAL 284 284 284 VAL VAL B . n A 1 285 VAL 285 285 285 VAL VAL B . n A 1 286 MET 286 286 286 MET MET B . n A 1 287 TRP 287 287 287 TRP TRP B . n A 1 288 LEU 288 288 288 LEU LEU B . n A 1 289 ARG 289 289 289 ARG ARG B . n A 1 290 VAL 290 290 290 VAL VAL B . n A 1 291 GLU 291 291 291 GLU GLU B . n A 1 292 SER 292 292 292 SER SER B . n A 1 293 GLY 293 293 293 GLY GLY B . n A 1 294 SER 294 294 294 SER SER B . n A 1 295 ALA 295 295 295 ALA ALA B . n A 1 296 HIS 296 296 296 HIS HIS B . n A 1 297 ILE 297 297 297 ILE ILE B . n A 1 298 SER 298 298 298 SER SER B . n A 1 299 SER 299 299 299 SER SER B . n A 1 300 ALA 300 300 300 ALA ALA B . n A 1 301 PRO 301 301 301 PRO PRO B . n A 1 302 TYR 302 302 302 TYR TYR B . n A 1 303 THR 303 303 303 THR THR B . n A 1 304 THR 304 304 304 THR THR B . n A 1 305 HIS 305 305 305 HIS HIS B . n A 1 306 ARG 306 306 306 ARG ARG B . n A 1 307 LEU 307 307 307 LEU LEU B . n A 1 308 TRP 308 308 308 TRP TRP B . n A 1 309 ILE 309 309 309 ILE ILE B . n A 1 310 ASN 310 310 310 ASN ASN B . n A 1 311 GLY 311 311 311 GLY GLY B . n A 1 312 ALA 312 312 312 ALA ALA B . n A 1 313 VAL 313 313 313 VAL VAL B . n A 1 314 ALA 314 314 314 ALA ALA B . n A 1 315 ALA 315 315 315 ALA ALA B . n A 1 316 PRO 316 316 316 PRO PRO B . n A 1 317 GLY 317 317 317 GLY GLY B . n A 1 318 VAL 318 318 318 VAL VAL B . n A 1 319 VAL 319 319 319 VAL VAL B . n A 1 320 LEU 320 320 320 LEU LEU B . n A 1 321 PRO 321 321 321 PRO PRO B . n A 1 322 ALA 322 322 322 ALA ALA B . n A 1 323 ASN 323 323 323 ASN ASN B . n A 1 324 GLN 324 324 324 GLN GLN B . n A 1 325 TRP 325 325 325 TRP TRP B . n A 1 326 VAL 326 326 326 VAL VAL B . n A 1 327 HIS 327 327 327 HIS HIS B . n A 1 328 LEU 328 328 328 LEU LEU B . n A 1 329 ARG 329 329 329 ARG ARG B . n A 1 330 PHE 330 330 330 PHE PHE B . n A 1 331 SER 331 331 331 SER SER B . n A 1 332 MET 332 332 332 MET MET B . n A 1 333 GLN 333 333 333 GLN GLN B . n A 1 334 SER 334 334 334 SER SER B . n A 1 335 TYR 335 335 335 TYR TYR B . n A 1 336 ASN 336 336 336 ASN ASN B . n A 1 337 GLY 337 337 337 GLY GLY B . n A 1 338 TYR 338 338 338 TYR TYR B . n A 1 339 ASP 339 339 339 ASP ASP B . n A 1 340 ASN 340 340 340 ASN ASN B . n A 1 341 ALA 341 341 341 ALA ALA B . n A 1 342 CYS 342 342 342 CYS CYS B . n A 1 343 PRO 343 343 343 PRO PRO B . n A 1 344 TYR 344 344 344 TYR TYR B . n A 1 345 ILE 345 345 345 ILE ILE B . n A 1 346 TYR 346 346 346 TYR TYR B . n A 1 347 ALA 347 347 347 ALA ALA B . n A 1 348 SER 348 348 348 SER SER B . n A 1 349 ALA 349 349 349 ALA ALA B . n A 1 350 GLY 350 350 350 GLY GLY B . n A 1 351 ALA 351 351 351 ALA ALA B . n A 1 352 GLN 352 352 352 GLN GLN B . n A 1 353 ILE 353 353 353 ILE ILE B . n A 1 354 ALA 354 354 354 ALA ALA B . n A 1 355 PHE 355 355 355 PHE PHE B . n A 1 356 ALA 356 356 356 ALA ALA B . n A 1 357 CYS 357 357 357 CYS CYS B . n A 1 358 PRO 358 358 358 PRO PRO B . n A 1 359 ALA 359 359 359 ALA ALA B . n A 1 360 TRP 360 360 360 TRP TRP B . n A 1 361 PHE 361 361 361 PHE PHE B . n A 1 362 GLY 362 362 362 GLY GLY B . n A 1 363 GLY 363 363 363 GLY GLY B . n A 1 364 LEU 364 364 364 LEU LEU B . n A 1 365 VAL 365 365 365 VAL VAL B . n A 1 366 ASP 366 366 366 ASP ASP B . n A 1 367 PRO 367 367 367 PRO PRO B . n A 1 368 GLY 368 368 368 GLY GLY B . n A 1 369 ILE 369 369 369 ILE ILE B . n A 1 370 HIS 370 370 370 HIS HIS B . n A 1 371 VAL 371 371 371 VAL VAL B . n A 1 372 ALA 372 372 372 ALA ALA B . n A 1 373 PRO 373 373 373 PRO PRO B . n A 1 374 ILE 374 374 374 ILE ILE B . n A 1 375 LEU 375 375 375 LEU LEU B . n A 1 376 THR 376 376 376 THR THR B . n A 1 377 ILE 377 377 377 ILE ILE B . n A 1 378 ASN 378 378 378 ASN ASN B . n A 1 379 GLY 379 379 379 GLY GLY B . n A 1 380 ALA 380 380 380 ALA ALA B . n A 1 381 SER 381 381 381 SER SER B . n A 1 382 ALA 382 382 382 ALA ALA B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8RK4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8RK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8RK4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8RK4 _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 8619 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.576 ? 11793 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 3.807 ? 1209 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.061 ? 1269 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 1524 ? f_plane_restr ? ? # _struct.entry_id 8RK4 _struct.title 'Receptor binding protein of bacteriophage JBD30 computed with C3 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8RK4 _struct_keywords.text 'bacteriophage, virion, receptor binding protein, VIRUS' _struct_keywords.pdbx_keywords VIRUS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code L7P803_9CAUD _struct_ref.pdbx_db_accession L7P803 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTLYMGPNTGLLINGLPGEGHYSDLIRMWRWDDFLRQPVVKGRVATLPTTGQAEGDTYIFTGSGSNQNRLARWWATGATT AIWEYMPPRLGWRVQVANETTPSGQVKTYEYSGTAWVELVGGMSDAPSDGKAYARESGAWTELGSAAKSALNVLPFMNLM PDMGRFAGTAANPLATMFTTSWTPSSFLNGWNGATVADGGKFAFDNSTNGGAGPALNARVQALLAAMGRTWTSVSRYGVE FFTAVLTAGSQTTTGSAGADGVTRYLCCSNGSKTVFNAGGWATVVMWLRVESGSAHISSAPYTTHRLWINGAVAAPGVVL PANQWVHLRFSMQSYNGYDNACPYIYASAGAQIAFACPAWFGGLVDPGIHVAPILTINGASA ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8RK4 _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 382 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession L7P803 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 382 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 382 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.16_b42360.' _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 1 2 A 1 3 A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? -0.500000 -0.866025 0.000000 252.45680 0.866025 -0.500000 0.000000 67.64560 -0.000000 -0.000000 1.000000 0.00000 3 'point symmetry operation' ? ? -0.500000 0.866025 -0.000000 67.64560 -0.866025 -0.500000 -0.000000 252.45680 0.000000 0.000000 1.000000 -0.00000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 17 ? GLU A 19 ? PRO B 17 GLU B 19 5 ? 3 HELX_P HELX_P2 AA2 GLY A 20 ? LEU A 35 ? GLY B 20 LEU B 35 1 ? 16 HELX_P HELX_P3 AA3 GLY A 144 ? LYS A 148 ? GLY B 144 LYS B 148 5 ? 5 HELX_P HELX_P4 AA4 ASN A 217 ? GLY A 228 ? ASN B 217 GLY B 228 1 ? 12 HELX_P HELX_P5 AA5 TRP A 231 ? ARG A 236 ? TRP B 231 ARG B 236 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? AA3 ? 3 ? AA4 ? 2 ? AA5 ? 2 ? AA6 ? 7 ? AA7 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA6 1 2 ? anti-parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA6 5 6 ? anti-parallel AA6 6 7 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLY A 42 ? VAL A 44 ? GLY B 42 VAL B 44 AA1 2 TYR A 58 ? PHE A 60 ? TYR B 58 PHE B 60 AA1 3 ARG A 69 ? LEU A 70 ? ARG B 69 LEU B 70 AA2 1 ARG A 72 ? TRP A 73 ? ARG B 72 TRP B 73 AA2 2 TRP A 83 ? GLU A 84 ? TRP B 83 GLU B 84 AA3 1 GLN A 95 ? THR A 100 ? GLN B 95 THR B 100 AA3 2 VAL A 106 ? TYR A 111 ? VAL B 106 TYR B 111 AA3 3 TRP A 116 ? GLU A 118 ? TRP B 116 GLU B 118 AA4 1 TYR A 133 ? GLU A 136 ? TYR B 133 GLU B 136 AA4 2 ALA A 139 ? GLU A 142 ? ALA B 139 GLU B 142 AA5 1 ASN A 189 ? GLY A 190 ? ASN B 189 GLY B 190 AA5 2 CYS A 268 ? SER A 269 ? CYS B 268 SER B 269 AA6 1 THR A 195 ? PHE A 202 ? THR B 195 PHE B 202 AA6 2 PHE A 241 ? THR A 247 ? PHE B 241 THR B 247 AA6 3 GLN A 352 ? PHE A 361 ? GLN B 352 PHE B 361 AA6 4 TRP A 281 ? VAL A 290 ? TRP B 281 VAL B 290 AA6 5 VAL A 326 ? GLN A 333 ? VAL B 326 GLN B 333 AA6 6 ARG A 306 ? ILE A 309 ? ARG B 306 ILE B 309 AA6 7 ALA A 312 ? ALA A 314 ? ALA B 312 ALA B 314 AA7 1 GLY A 255 ? ALA A 257 ? GLY B 255 ALA B 257 AA7 2 THR A 263 ? LEU A 266 ? THR B 263 LEU B 266 AA7 3 ILE A 345 ? ALA A 347 ? ILE B 345 ALA B 347 AA7 4 ALA A 295 ? ILE A 297 ? ALA B 295 ILE B 297 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 44 ? N VAL B 44 O ILE A 59 ? O ILE B 59 AA1 2 3 N PHE A 60 ? N PHE B 60 O ARG A 69 ? O ARG B 69 AA2 1 2 N ARG A 72 ? N ARG B 72 O GLU A 84 ? O GLU B 84 AA3 1 2 N VAL A 96 ? N VAL B 96 O LYS A 107 ? O LYS B 107 AA3 2 3 N GLU A 110 ? N GLU B 110 O VAL A 117 ? O VAL B 117 AA4 1 2 N GLU A 136 ? N GLU B 136 O ALA A 139 ? O ALA B 139 AA5 1 2 N ASN A 189 ? N ASN B 189 O SER A 269 ? O SER B 269 AA6 1 2 N GLY A 199 ? N GLY B 199 O THR A 243 ? O THR B 243 AA6 2 3 N LEU A 246 ? N LEU B 246 O ILE A 353 ? O ILE B 353 AA6 3 4 O ALA A 354 ? O ALA B 354 N ARG A 289 ? N ARG B 289 AA6 4 5 N ALA A 282 ? N ALA B 282 O MET A 332 ? O MET B 332 AA6 5 6 O SER A 331 ? O SER B 331 N ARG A 306 ? N ARG B 306 AA6 6 7 N ILE A 309 ? N ILE B 309 O ALA A 312 ? O ALA B 312 AA7 1 2 N SER A 256 ? N SER B 256 O ARG A 264 ? O ARG B 264 AA7 2 3 N TYR A 265 ? N TYR B 265 O ALA A 347 ? O ALA B 347 AA7 3 4 O TYR A 346 ? O TYR B 346 N HIS A 296 ? N HIS B 296 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 33 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH2 _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 36 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.13 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU B 16 ? ? 59.28 151.61 2 1 LEU B 35 ? ? -68.08 2.44 3 1 ASN B 68 ? ? 74.50 -3.40 4 1 SER B 298 ? ? 69.96 -163.39 5 1 THR B 303 ? ? 54.24 -147.24 6 1 ARG B 306 ? ? -164.29 117.56 7 1 ASN B 323 ? ? 71.20 35.91 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8RK4 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 8RK4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.74 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 4088 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10 mM MgSO4, 10 mM NaCl, 50 mM Tris pH 8' _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Pseudomonas phage JBD30' _em_entity_assembly.details 'Phage JBD30 was propagated in P. aeruginosa strain BAA-28 and purified using CsCl gradient.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_image_scans.entry_id 8RK4 _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8RK4 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 1600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.details 'Gatan Solarus II' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 8RK4 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'blotting force 0, blotting time 2 s, waiting time 15 s' # _em_experiment.entry_id 8RK4 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8RK4 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C3 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B MET 1 ? A MET 1 2 1 Y 1 B THR 2 ? A THR 2 3 1 Y 1 B LEU 3 ? A LEU 3 4 1 Y 1 B TYR 4 ? A TYR 4 5 1 Y 1 B MET 5 ? A MET 5 6 1 Y 1 B GLY 6 ? A GLY 6 7 1 Y 1 B PRO 7 ? A PRO 7 8 1 Y 1 B ASN 8 ? A ASN 8 9 1 Y 1 B THR 9 ? A THR 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2023-12-23 _em_admin.deposition_site PDBE _em_admin.entry_id 8RK4 _em_admin.last_update 2024-08-28 _em_admin.map_release_date 2024-08-14 _em_admin.title 'Receptor binding protein of bacteriophage JBD30 computed with C3 symmetry' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 10 mM NaCl 1 'sodium chloride' 1 10 mM MgSO4 2 'magnesium sulphate' 1 50 mM Tris-HCl 3 'Tris hydrochloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.137 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1223260 _em_entity_assembly_naturalsource.organism 'Pseudomonas phage JBD30' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 2 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 34 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 12356 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5340 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? crYOLO 1.8 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' 'ctf estimation' 4 1 ? ? Gctf 1.06 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot 8.0.011 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? RELION 3.1 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 3.1 CLASSIFICATION ? 11 1 ? ? RELION 3.1 RECONSTRUCTION ? 12 1 ? ? RELION 3.1 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.20.1 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details 'phage titer 10^11 PFU' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 287 _em_virus_natural_host.organism 'Pseudomonas aeruginosa' _em_virus_natural_host.strain BAA-28 # _em_virus_shell.diameter 640 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name 'JBD30 capsid' _em_virus_shell.triangulation 7 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education, Youth and Sports of the Czech Republic' 'Czech Republic' LX22NPO5103 1 'European Research Council (ERC)' 'European Union' 101043452 2 # _atom_sites.entry_id 8RK4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_