data_8RKA # _entry.id 8RKA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8RKA pdb_00008rka 10.2210/pdb8rka/pdb WWPDB D_1292135487 ? ? EMDB EMD-19266 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-08-14 2 'Structure model' 1 1 2024-08-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8RKA _pdbx_database_status.recvd_initial_deposition_date 2023-12-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Connector complex of empty bacteriophage JBD30 particle computed in C12 symmetry' _pdbx_database_related.db_id EMD-19266 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email pavel.plevka@ceitec.muni.cz _pdbx_contact_author.name_first Pavel _pdbx_contact_author.name_last Plevka _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4215-3315 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Valentova, L.' 1 0000-0003-0160-2014 'Fuzik, T.' 2 0000-0002-1190-0210 'Plevka, P.' 3 0000-0003-4215-3315 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Embo J.' EMJODG 0897 1460-2075 ? ? ? ? ? ? 'Structure and replication of Pseudomonas aeruginosa phage JBD30.' 2024 ? 10.1038/s44318-024-00195-1 39143239 ? ? ? ? ? ? ? ? ? UK ? ? 1 'Embo J.' EMJODG 0897 1460-2075 ? ? ? ? ? ? 'Structure and replication of Pseudomonas aeruginosa phage JBD30' 2024 ? 10.1038/s44318-024-0 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Valentova, L.' 1 0000-0003-0160-2014 primary 'Fuzik, T.' 2 0000-0002-1190-0210 primary 'Novacek, J.' 3 0000-0003-4013-3898 primary 'Hlavenkova, Z.' 4 0009-0005-3242-2237 primary 'Pospisil, J.' 5 0000-0002-8679-677X primary 'Plevka, P.' 6 0000-0003-4215-3315 1 'Valentova, L.' 7 0000-0003-0160-2014 1 'Plevka, P.' 8 0000-0003-4215-3315 1 'Fuzik, T.' 9 0000-0002-1190-0210 1 'Novacek, J.' 10 0000-0003-4013-3898 1 'Pospisil, J.' 11 0000-0002-8679-677X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Portal protein' 57791.332 1 ? ? ? ? 2 polymer nat 'DUF1320 domain-containing protein' 15155.176 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSDPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALASLPAKDMQDQVNDLLAPLLEAVNRGD SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID ; ;MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSDPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALASLPAKDMQDQVNDLLAPLLEAVNRGD SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID ; A ? 2 'polypeptide(L)' no no ;MSYCTLADLIEQYSEQKIREVSDRVNKPATTIDTVIVDRAIADADSEIDLHLHGRYQLPLASVPTALKRIACGLAYANLH IVLKEENPVYKTAEHLRKLLSGIANGKLSLALDADGKPAPVANTVQISEGRNDWGADW ; ;MSYCTLADLIEQYSEQKIREVSDRVNKPATTIDTVIVDRAIADADSEIDLHLHGRYQLPLASVPTALKRIACGLAYANLH IVLKEENPVYKTAEHLRKLLSGIANGKLSLALDADGKPAPVANTVQISEGRNDWGADW ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLN n 1 4 ILE n 1 5 VAL n 1 6 ASP n 1 7 VAL n 1 8 TYR n 1 9 GLY n 1 10 ASN n 1 11 PRO n 1 12 ILE n 1 13 ARG n 1 14 THR n 1 15 GLN n 1 16 GLN n 1 17 LEU n 1 18 ARG n 1 19 GLU n 1 20 PRO n 1 21 GLN n 1 22 THR n 1 23 SER n 1 24 ARG n 1 25 LEU n 1 26 ALA n 1 27 GLY n 1 28 LEU n 1 29 ALA n 1 30 LYS n 1 31 GLU n 1 32 PHE n 1 33 ALA n 1 34 GLN n 1 35 HIS n 1 36 PRO n 1 37 ALA n 1 38 LYS n 1 39 GLY n 1 40 LEU n 1 41 THR n 1 42 PRO n 1 43 ALA n 1 44 LYS n 1 45 LEU n 1 46 ALA n 1 47 ARG n 1 48 ILE n 1 49 LEU n 1 50 VAL n 1 51 GLU n 1 52 ALA n 1 53 GLU n 1 54 GLN n 1 55 GLY n 1 56 ASN n 1 57 LEU n 1 58 GLN n 1 59 ALA n 1 60 GLN n 1 61 ALA n 1 62 GLU n 1 63 LEU n 1 64 PHE n 1 65 MET n 1 66 ASP n 1 67 MET n 1 68 GLU n 1 69 GLU n 1 70 ARG n 1 71 ASP n 1 72 ALA n 1 73 HIS n 1 74 LEU n 1 75 PHE n 1 76 ALA n 1 77 GLU n 1 78 MET n 1 79 SER n 1 80 LYS n 1 81 ARG n 1 82 LYS n 1 83 ARG n 1 84 ALA n 1 85 ILE n 1 86 LEU n 1 87 GLY n 1 88 LEU n 1 89 ASP n 1 90 TRP n 1 91 ALA n 1 92 VAL n 1 93 GLU n 1 94 PRO n 1 95 PRO n 1 96 ARG n 1 97 ASN n 1 98 ALA n 1 99 SER n 1 100 ALA n 1 101 ALA n 1 102 GLU n 1 103 LYS n 1 104 ALA n 1 105 ASP n 1 106 ALA n 1 107 ASP n 1 108 TYR n 1 109 LEU n 1 110 HIS n 1 111 GLU n 1 112 LEU n 1 113 LEU n 1 114 LEU n 1 115 ASP n 1 116 LEU n 1 117 GLU n 1 118 GLY n 1 119 LEU n 1 120 GLU n 1 121 ASP n 1 122 LEU n 1 123 LEU n 1 124 LEU n 1 125 ASP n 1 126 ALA n 1 127 LEU n 1 128 ASP n 1 129 GLY n 1 130 ILE n 1 131 GLY n 1 132 HIS n 1 133 GLY n 1 134 TYR n 1 135 SER n 1 136 CYS n 1 137 ILE n 1 138 GLU n 1 139 LEU n 1 140 GLU n 1 141 TRP n 1 142 ALA n 1 143 LEU n 1 144 GLN n 1 145 GLY n 1 146 ARG n 1 147 GLU n 1 148 TRP n 1 149 MET n 1 150 PRO n 1 151 LEU n 1 152 ALA n 1 153 PHE n 1 154 HIS n 1 155 HIS n 1 156 ARG n 1 157 PRO n 1 158 GLN n 1 159 SER n 1 160 TRP n 1 161 PHE n 1 162 GLN n 1 163 LEU n 1 164 ASN n 1 165 PRO n 1 166 GLU n 1 167 ASP n 1 168 GLN n 1 169 ASN n 1 170 GLU n 1 171 LEU n 1 172 ARG n 1 173 LEU n 1 174 ARG n 1 175 ASP n 1 176 ASN n 1 177 SER n 1 178 PRO n 1 179 ALA n 1 180 GLY n 1 181 GLU n 1 182 ALA n 1 183 LEU n 1 184 GLN n 1 185 PRO n 1 186 PHE n 1 187 GLY n 1 188 TRP n 1 189 ILE n 1 190 ILE n 1 191 HIS n 1 192 ARG n 1 193 PRO n 1 194 ARG n 1 195 ALA n 1 196 ARG n 1 197 SER n 1 198 GLY n 1 199 TYR n 1 200 VAL n 1 201 ALA n 1 202 ARG n 1 203 SER n 1 204 GLY n 1 205 LEU n 1 206 PHE n 1 207 ARG n 1 208 VAL n 1 209 LEU n 1 210 ALA n 1 211 TRP n 1 212 PRO n 1 213 TYR n 1 214 LEU n 1 215 PHE n 1 216 ARG n 1 217 HIS n 1 218 TYR n 1 219 ALA n 1 220 THR n 1 221 SER n 1 222 ASP n 1 223 LEU n 1 224 ALA n 1 225 GLU n 1 226 MET n 1 227 LEU n 1 228 GLU n 1 229 ILE n 1 230 TYR n 1 231 GLY n 1 232 LEU n 1 233 PRO n 1 234 ILE n 1 235 ARG n 1 236 LEU n 1 237 GLY n 1 238 LYS n 1 239 TYR n 1 240 PRO n 1 241 PRO n 1 242 GLY n 1 243 THR n 1 244 ALA n 1 245 ASP n 1 246 GLU n 1 247 GLU n 1 248 LYS n 1 249 ALA n 1 250 THR n 1 251 LEU n 1 252 LEU n 1 253 ARG n 1 254 ALA n 1 255 VAL n 1 256 THR n 1 257 GLY n 1 258 LEU n 1 259 GLY n 1 260 HIS n 1 261 ALA n 1 262 ALA n 1 263 ALA n 1 264 GLY n 1 265 ILE n 1 266 ILE n 1 267 PRO n 1 268 GLU n 1 269 THR n 1 270 MET n 1 271 ALA n 1 272 ILE n 1 273 ASP n 1 274 PHE n 1 275 GLN n 1 276 GLN n 1 277 ALA n 1 278 ALA n 1 279 GLN n 1 280 GLY n 1 281 SER n 1 282 SER n 1 283 ASP n 1 284 PRO n 1 285 PHE n 1 286 LEU n 1 287 ALA n 1 288 MET n 1 289 MET n 1 290 ARG n 1 291 GLN n 1 292 SER n 1 293 GLU n 1 294 ASP n 1 295 ALA n 1 296 ILE n 1 297 SER n 1 298 LYS n 1 299 ALA n 1 300 VAL n 1 301 LEU n 1 302 GLY n 1 303 GLY n 1 304 THR n 1 305 LEU n 1 306 THR n 1 307 SER n 1 308 THR n 1 309 THR n 1 310 SER n 1 311 GLN n 1 312 SER n 1 313 GLY n 1 314 GLY n 1 315 GLY n 1 316 ALA n 1 317 PHE n 1 318 ALA n 1 319 LEU n 1 320 GLY n 1 321 GLN n 1 322 VAL n 1 323 HIS n 1 324 ASN n 1 325 GLU n 1 326 VAL n 1 327 ARG n 1 328 HIS n 1 329 ASP n 1 330 LEU n 1 331 LEU n 1 332 ALA n 1 333 SER n 1 334 ASP n 1 335 ALA n 1 336 ARG n 1 337 GLN n 1 338 LEU n 1 339 ALA n 1 340 ALA n 1 341 THR n 1 342 LEU n 1 343 SER n 1 344 ARG n 1 345 ASP n 1 346 LEU n 1 347 LEU n 1 348 TRP n 1 349 PRO n 1 350 LEU n 1 351 LEU n 1 352 VAL n 1 353 LEU n 1 354 ASN n 1 355 ARG n 1 356 PRO n 1 357 GLY n 1 358 SER n 1 359 PRO n 1 360 ASP n 1 361 VAL n 1 362 ARG n 1 363 ARG n 1 364 ALA n 1 365 PRO n 1 366 ARG n 1 367 LEU n 1 368 VAL n 1 369 PHE n 1 370 ASP n 1 371 LEU n 1 372 ARG n 1 373 GLU n 1 374 GLN n 1 375 ALA n 1 376 ASP n 1 377 ILE n 1 378 THR n 1 379 SER n 1 380 MET n 1 381 ALA n 1 382 GLN n 1 383 SER n 1 384 ILE n 1 385 PRO n 1 386 ALA n 1 387 LEU n 1 388 VAL n 1 389 ASN n 1 390 VAL n 1 391 GLY n 1 392 LEU n 1 393 GLU n 1 394 ILE n 1 395 PRO n 1 396 SER n 1 397 ALA n 1 398 TRP n 1 399 VAL n 1 400 TYR n 1 401 ASP n 1 402 LYS n 1 403 LEU n 1 404 GLY n 1 405 ILE n 1 406 PRO n 1 407 GLN n 1 408 PRO n 1 409 ALA n 1 410 LYS n 1 411 ASN n 1 412 GLU n 1 413 PRO n 1 414 VAL n 1 415 LEU n 1 416 ARG n 1 417 SER n 1 418 ALA n 1 419 ALA n 1 420 GLN n 1 421 PRO n 1 422 ALA n 1 423 ILE n 1 424 LEU n 1 425 SER n 1 426 ARG n 1 427 GLN n 1 428 HIS n 1 429 GLY n 1 430 GLN n 1 431 ARG n 1 432 VAL n 1 433 ALA n 1 434 ALA n 1 435 LEU n 1 436 ALA n 1 437 THR n 1 438 ILE n 1 439 VAL n 1 440 GLY n 1 441 PRO n 1 442 ARG n 1 443 TYR n 1 444 GLY n 1 445 ASP n 1 446 GLN n 1 447 GLN n 1 448 ALA n 1 449 LEU n 1 450 ASP n 1 451 LYS n 1 452 ALA n 1 453 LEU n 1 454 ALA n 1 455 SER n 1 456 LEU n 1 457 PRO n 1 458 ALA n 1 459 LYS n 1 460 ASP n 1 461 MET n 1 462 GLN n 1 463 ASP n 1 464 GLN n 1 465 VAL n 1 466 ASN n 1 467 ASP n 1 468 LEU n 1 469 LEU n 1 470 ALA n 1 471 PRO n 1 472 LEU n 1 473 LEU n 1 474 GLU n 1 475 ALA n 1 476 VAL n 1 477 ASN n 1 478 ARG n 1 479 GLY n 1 480 ASP n 1 481 SER n 1 482 GLU n 1 483 THR n 1 484 GLU n 1 485 LEU n 1 486 LEU n 1 487 GLY n 1 488 ALA n 1 489 LEU n 1 490 ALA n 1 491 GLU n 1 492 ALA n 1 493 PHE n 1 494 PRO n 1 495 ASP n 1 496 MET n 1 497 ASP n 1 498 ASP n 1 499 SER n 1 500 ALA n 1 501 LEU n 1 502 THR n 1 503 ASP n 1 504 ALA n 1 505 LEU n 1 506 HIS n 1 507 ARG n 1 508 LEU n 1 509 LEU n 1 510 PHE n 1 511 ALA n 1 512 ALA n 1 513 ASP n 1 514 THR n 1 515 TRP n 1 516 GLY n 1 517 ARG n 1 518 LEU n 1 519 HIS n 1 520 GLY n 1 521 ASN n 1 522 LEU n 1 523 ASP n 1 524 ARG n 1 525 ILE n 1 526 ASP n 2 1 MET n 2 2 SER n 2 3 TYR n 2 4 CYS n 2 5 THR n 2 6 LEU n 2 7 ALA n 2 8 ASP n 2 9 LEU n 2 10 ILE n 2 11 GLU n 2 12 GLN n 2 13 TYR n 2 14 SER n 2 15 GLU n 2 16 GLN n 2 17 LYS n 2 18 ILE n 2 19 ARG n 2 20 GLU n 2 21 VAL n 2 22 SER n 2 23 ASP n 2 24 ARG n 2 25 VAL n 2 26 ASN n 2 27 LYS n 2 28 PRO n 2 29 ALA n 2 30 THR n 2 31 THR n 2 32 ILE n 2 33 ASP n 2 34 THR n 2 35 VAL n 2 36 ILE n 2 37 VAL n 2 38 ASP n 2 39 ARG n 2 40 ALA n 2 41 ILE n 2 42 ALA n 2 43 ASP n 2 44 ALA n 2 45 ASP n 2 46 SER n 2 47 GLU n 2 48 ILE n 2 49 ASP n 2 50 LEU n 2 51 HIS n 2 52 LEU n 2 53 HIS n 2 54 GLY n 2 55 ARG n 2 56 TYR n 2 57 GLN n 2 58 LEU n 2 59 PRO n 2 60 LEU n 2 61 ALA n 2 62 SER n 2 63 VAL n 2 64 PRO n 2 65 THR n 2 66 ALA n 2 67 LEU n 2 68 LYS n 2 69 ARG n 2 70 ILE n 2 71 ALA n 2 72 CYS n 2 73 GLY n 2 74 LEU n 2 75 ALA n 2 76 TYR n 2 77 ALA n 2 78 ASN n 2 79 LEU n 2 80 HIS n 2 81 ILE n 2 82 VAL n 2 83 LEU n 2 84 LYS n 2 85 GLU n 2 86 GLU n 2 87 ASN n 2 88 PRO n 2 89 VAL n 2 90 TYR n 2 91 LYS n 2 92 THR n 2 93 ALA n 2 94 GLU n 2 95 HIS n 2 96 LEU n 2 97 ARG n 2 98 LYS n 2 99 LEU n 2 100 LEU n 2 101 SER n 2 102 GLY n 2 103 ILE n 2 104 ALA n 2 105 ASN n 2 106 GLY n 2 107 LYS n 2 108 LEU n 2 109 SER n 2 110 LEU n 2 111 ALA n 2 112 LEU n 2 113 ASP n 2 114 ALA n 2 115 ASP n 2 116 GLY n 2 117 LYS n 2 118 PRO n 2 119 ALA n 2 120 PRO n 2 121 VAL n 2 122 ALA n 2 123 ASN n 2 124 THR n 2 125 VAL n 2 126 GLN n 2 127 ILE n 2 128 SER n 2 129 GLU n 2 130 GLY n 2 131 ARG n 2 132 ASN n 2 133 ASP n 2 134 TRP n 2 135 GLY n 2 136 ALA n 2 137 ASP n 2 138 TRP n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 526 ? 'Pseudomonas phage JBD30' 1223260 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 138 ? 'Pseudomonas phage JBD30' 1223260 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 ILE 4 4 ? ? ? A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 HIS 35 35 35 HIS HIS A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 PHE 64 64 64 PHE PHE A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ASP 71 71 71 ASP ASP A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 HIS 73 73 73 HIS HIS A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 TRP 90 90 90 TRP TRP A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 ALA 98 98 98 ALA ALA A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 ALA 106 106 106 ALA ALA A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 HIS 110 110 110 HIS HIS A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ASP 121 121 121 ASP ASP A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 HIS 132 132 132 HIS HIS A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 TYR 134 134 134 TYR TYR A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 CYS 136 136 136 CYS CYS A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 TRP 141 141 141 TRP TRP A . n A 1 142 ALA 142 142 142 ALA ALA A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLN 144 144 144 GLN GLN A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 TRP 148 148 148 TRP TRP A . n A 1 149 MET 149 149 149 MET MET A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 HIS 155 155 155 HIS HIS A . n A 1 156 ARG 156 156 156 ARG ARG A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 TRP 160 160 160 TRP TRP A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ASN 164 164 164 ASN ASN A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 GLU 166 166 166 GLU GLU A . n A 1 167 ASP 167 167 167 ASP ASP A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 ASN 169 169 169 ASN ASN A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 ARG 172 172 172 ARG ARG A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 ASN 176 176 176 ASN ASN A . n A 1 177 SER 177 177 177 SER SER A . n A 1 178 PRO 178 178 178 PRO PRO A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 GLU 181 181 181 GLU GLU A . n A 1 182 ALA 182 182 182 ALA ALA A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 GLN 184 184 184 GLN GLN A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 PHE 186 186 186 PHE PHE A . n A 1 187 GLY 187 187 187 GLY GLY A . n A 1 188 TRP 188 188 188 TRP TRP A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 ILE 190 190 190 ILE ILE A . n A 1 191 HIS 191 191 191 HIS HIS A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 SER 197 197 197 SER SER A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 VAL 200 200 200 VAL VAL A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 ARG 202 202 202 ARG ARG A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 ARG 207 207 207 ARG ARG A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 TRP 211 211 211 TRP TRP A . n A 1 212 PRO 212 212 212 PRO PRO A . n A 1 213 TYR 213 213 213 TYR TYR A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 ARG 216 216 216 ARG ARG A . n A 1 217 HIS 217 217 217 HIS HIS A . n A 1 218 TYR 218 218 218 TYR TYR A . n A 1 219 ALA 219 219 219 ALA ALA A . n A 1 220 THR 220 220 220 THR THR A . n A 1 221 SER 221 221 221 SER SER A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 ALA 224 224 224 ALA ALA A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 MET 226 226 226 MET MET A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 ILE 229 229 229 ILE ILE A . n A 1 230 TYR 230 230 230 TYR TYR A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 LEU 232 232 232 LEU LEU A . n A 1 233 PRO 233 233 233 PRO PRO A . n A 1 234 ILE 234 234 234 ILE ILE A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 LEU 236 236 236 LEU LEU A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 LYS 238 238 238 LYS LYS A . n A 1 239 TYR 239 239 239 TYR TYR A . n A 1 240 PRO 240 240 240 PRO PRO A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 GLY 242 242 242 GLY GLY A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 ALA 244 244 244 ALA ALA A . n A 1 245 ASP 245 245 245 ASP ASP A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 GLU 247 247 247 GLU GLU A . n A 1 248 LYS 248 248 248 LYS LYS A . n A 1 249 ALA 249 249 249 ALA ALA A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 LEU 251 251 251 LEU LEU A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 ARG 253 253 253 ARG ARG A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 THR 256 256 256 THR THR A . n A 1 257 GLY 257 257 257 GLY GLY A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 HIS 260 260 260 HIS HIS A . n A 1 261 ALA 261 261 261 ALA ALA A . n A 1 262 ALA 262 262 262 ALA ALA A . n A 1 263 ALA 263 263 263 ALA ALA A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 ILE 265 265 265 ILE ILE A . n A 1 266 ILE 266 266 266 ILE ILE A . n A 1 267 PRO 267 267 267 PRO PRO A . n A 1 268 GLU 268 268 268 GLU GLU A . n A 1 269 THR 269 269 269 THR THR A . n A 1 270 MET 270 270 270 MET MET A . n A 1 271 ALA 271 271 271 ALA ALA A . n A 1 272 ILE 272 272 272 ILE ILE A . n A 1 273 ASP 273 273 273 ASP ASP A . n A 1 274 PHE 274 274 274 PHE PHE A . n A 1 275 GLN 275 275 275 GLN GLN A . n A 1 276 GLN 276 276 276 GLN GLN A . n A 1 277 ALA 277 277 277 ALA ALA A . n A 1 278 ALA 278 278 278 ALA ALA A . n A 1 279 GLN 279 279 279 GLN GLN A . n A 1 280 GLY 280 280 280 GLY GLY A . n A 1 281 SER 281 281 281 SER SER A . n A 1 282 SER 282 282 282 SER SER A . n A 1 283 ASP 283 283 283 ASP ASP A . n A 1 284 PRO 284 284 284 PRO PRO A . n A 1 285 PHE 285 285 285 PHE PHE A . n A 1 286 LEU 286 286 286 LEU LEU A . n A 1 287 ALA 287 287 287 ALA ALA A . n A 1 288 MET 288 288 288 MET MET A . n A 1 289 MET 289 289 289 MET MET A . n A 1 290 ARG 290 290 290 ARG ARG A . n A 1 291 GLN 291 291 291 GLN GLN A . n A 1 292 SER 292 292 292 SER SER A . n A 1 293 GLU 293 293 293 GLU GLU A . n A 1 294 ASP 294 294 294 ASP ASP A . n A 1 295 ALA 295 295 295 ALA ALA A . n A 1 296 ILE 296 296 296 ILE ILE A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 LYS 298 298 298 LYS LYS A . n A 1 299 ALA 299 299 299 ALA ALA A . n A 1 300 VAL 300 300 300 VAL VAL A . n A 1 301 LEU 301 301 301 LEU LEU A . n A 1 302 GLY 302 302 302 GLY GLY A . n A 1 303 GLY 303 303 303 GLY GLY A . n A 1 304 THR 304 304 304 THR THR A . n A 1 305 LEU 305 305 305 LEU LEU A . n A 1 306 THR 306 306 306 THR THR A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 THR 308 308 308 THR THR A . n A 1 309 THR 309 309 309 THR THR A . n A 1 310 SER 310 310 310 SER SER A . n A 1 311 GLN 311 311 311 GLN GLN A . n A 1 312 SER 312 312 312 SER SER A . n A 1 313 GLY 313 313 313 GLY GLY A . n A 1 314 GLY 314 314 314 GLY GLY A . n A 1 315 GLY 315 315 315 GLY GLY A . n A 1 316 ALA 316 316 316 ALA ALA A . n A 1 317 PHE 317 317 317 PHE PHE A . n A 1 318 ALA 318 318 318 ALA ALA A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 GLY 320 320 320 GLY GLY A . n A 1 321 GLN 321 321 321 GLN GLN A . n A 1 322 VAL 322 322 322 VAL VAL A . n A 1 323 HIS 323 323 323 HIS HIS A . n A 1 324 ASN 324 324 324 ASN ASN A . n A 1 325 GLU 325 325 325 GLU GLU A . n A 1 326 VAL 326 326 326 VAL VAL A . n A 1 327 ARG 327 327 327 ARG ARG A . n A 1 328 HIS 328 328 328 HIS HIS A . n A 1 329 ASP 329 329 329 ASP ASP A . n A 1 330 LEU 330 330 330 LEU LEU A . n A 1 331 LEU 331 331 331 LEU LEU A . n A 1 332 ALA 332 332 332 ALA ALA A . n A 1 333 SER 333 333 333 SER SER A . n A 1 334 ASP 334 334 334 ASP ASP A . n A 1 335 ALA 335 335 335 ALA ALA A . n A 1 336 ARG 336 336 336 ARG ARG A . n A 1 337 GLN 337 337 337 GLN GLN A . n A 1 338 LEU 338 338 338 LEU LEU A . n A 1 339 ALA 339 339 339 ALA ALA A . n A 1 340 ALA 340 340 340 ALA ALA A . n A 1 341 THR 341 341 341 THR THR A . n A 1 342 LEU 342 342 342 LEU LEU A . n A 1 343 SER 343 343 343 SER SER A . n A 1 344 ARG 344 344 344 ARG ARG A . n A 1 345 ASP 345 345 345 ASP ASP A . n A 1 346 LEU 346 346 346 LEU LEU A . n A 1 347 LEU 347 347 347 LEU LEU A . n A 1 348 TRP 348 348 348 TRP TRP A . n A 1 349 PRO 349 349 349 PRO PRO A . n A 1 350 LEU 350 350 350 LEU LEU A . n A 1 351 LEU 351 351 351 LEU LEU A . n A 1 352 VAL 352 352 352 VAL VAL A . n A 1 353 LEU 353 353 353 LEU LEU A . n A 1 354 ASN 354 354 354 ASN ASN A . n A 1 355 ARG 355 355 355 ARG ARG A . n A 1 356 PRO 356 356 356 PRO PRO A . n A 1 357 GLY 357 357 357 GLY GLY A . n A 1 358 SER 358 358 358 SER SER A . n A 1 359 PRO 359 359 359 PRO PRO A . n A 1 360 ASP 360 360 360 ASP ASP A . n A 1 361 VAL 361 361 361 VAL VAL A . n A 1 362 ARG 362 362 362 ARG ARG A . n A 1 363 ARG 363 363 363 ARG ARG A . n A 1 364 ALA 364 364 364 ALA ALA A . n A 1 365 PRO 365 365 365 PRO PRO A . n A 1 366 ARG 366 366 366 ARG ARG A . n A 1 367 LEU 367 367 367 LEU LEU A . n A 1 368 VAL 368 368 368 VAL VAL A . n A 1 369 PHE 369 369 369 PHE PHE A . n A 1 370 ASP 370 370 370 ASP ASP A . n A 1 371 LEU 371 371 371 LEU LEU A . n A 1 372 ARG 372 372 372 ARG ARG A . n A 1 373 GLU 373 373 373 GLU GLU A . n A 1 374 GLN 374 374 374 GLN GLN A . n A 1 375 ALA 375 375 375 ALA ALA A . n A 1 376 ASP 376 376 376 ASP ASP A . n A 1 377 ILE 377 377 377 ILE ILE A . n A 1 378 THR 378 378 378 THR THR A . n A 1 379 SER 379 379 379 SER SER A . n A 1 380 MET 380 380 380 MET MET A . n A 1 381 ALA 381 381 381 ALA ALA A . n A 1 382 GLN 382 382 382 GLN GLN A . n A 1 383 SER 383 383 383 SER SER A . n A 1 384 ILE 384 384 384 ILE ILE A . n A 1 385 PRO 385 385 385 PRO PRO A . n A 1 386 ALA 386 386 386 ALA ALA A . n A 1 387 LEU 387 387 387 LEU LEU A . n A 1 388 VAL 388 388 388 VAL VAL A . n A 1 389 ASN 389 389 389 ASN ASN A . n A 1 390 VAL 390 390 390 VAL VAL A . n A 1 391 GLY 391 391 391 GLY GLY A . n A 1 392 LEU 392 392 392 LEU LEU A . n A 1 393 GLU 393 393 393 GLU GLU A . n A 1 394 ILE 394 394 394 ILE ILE A . n A 1 395 PRO 395 395 395 PRO PRO A . n A 1 396 SER 396 396 396 SER SER A . n A 1 397 ALA 397 397 397 ALA ALA A . n A 1 398 TRP 398 398 398 TRP TRP A . n A 1 399 VAL 399 399 399 VAL VAL A . n A 1 400 TYR 400 400 400 TYR TYR A . n A 1 401 ASP 401 401 401 ASP ASP A . n A 1 402 LYS 402 402 402 LYS LYS A . n A 1 403 LEU 403 403 403 LEU LEU A . n A 1 404 GLY 404 404 404 GLY GLY A . n A 1 405 ILE 405 405 405 ILE ILE A . n A 1 406 PRO 406 406 406 PRO PRO A . n A 1 407 GLN 407 407 407 GLN GLN A . n A 1 408 PRO 408 408 408 PRO PRO A . n A 1 409 ALA 409 409 409 ALA ALA A . n A 1 410 LYS 410 410 ? ? ? A . n A 1 411 ASN 411 411 ? ? ? A . n A 1 412 GLU 412 412 ? ? ? A . n A 1 413 PRO 413 413 ? ? ? A . n A 1 414 VAL 414 414 ? ? ? A . n A 1 415 LEU 415 415 ? ? ? A . n A 1 416 ARG 416 416 ? ? ? A . n A 1 417 SER 417 417 ? ? ? A . n A 1 418 ALA 418 418 ? ? ? A . n A 1 419 ALA 419 419 ? ? ? A . n A 1 420 GLN 420 420 ? ? ? A . n A 1 421 PRO 421 421 ? ? ? A . n A 1 422 ALA 422 422 ? ? ? A . n A 1 423 ILE 423 423 ? ? ? A . n A 1 424 LEU 424 424 ? ? ? A . n A 1 425 SER 425 425 ? ? ? A . n A 1 426 ARG 426 426 ? ? ? A . n A 1 427 GLN 427 427 ? ? ? A . n A 1 428 HIS 428 428 ? ? ? A . n A 1 429 GLY 429 429 ? ? ? A . n A 1 430 GLN 430 430 ? ? ? A . n A 1 431 ARG 431 431 ? ? ? A . n A 1 432 VAL 432 432 ? ? ? A . n A 1 433 ALA 433 433 ? ? ? A . n A 1 434 ALA 434 434 ? ? ? A . n A 1 435 LEU 435 435 ? ? ? A . n A 1 436 ALA 436 436 ? ? ? A . n A 1 437 THR 437 437 ? ? ? A . n A 1 438 ILE 438 438 ? ? ? A . n A 1 439 VAL 439 439 ? ? ? A . n A 1 440 GLY 440 440 ? ? ? A . n A 1 441 PRO 441 441 ? ? ? A . n A 1 442 ARG 442 442 ? ? ? A . n A 1 443 TYR 443 443 ? ? ? A . n A 1 444 GLY 444 444 ? ? ? A . n A 1 445 ASP 445 445 ? ? ? A . n A 1 446 GLN 446 446 ? ? ? A . n A 1 447 GLN 447 447 ? ? ? A . n A 1 448 ALA 448 448 ? ? ? A . n A 1 449 LEU 449 449 ? ? ? A . n A 1 450 ASP 450 450 ? ? ? A . n A 1 451 LYS 451 451 ? ? ? A . n A 1 452 ALA 452 452 ? ? ? A . n A 1 453 LEU 453 453 ? ? ? A . n A 1 454 ALA 454 454 ? ? ? A . n A 1 455 SER 455 455 ? ? ? A . n A 1 456 LEU 456 456 ? ? ? A . n A 1 457 PRO 457 457 ? ? ? A . n A 1 458 ALA 458 458 ? ? ? A . n A 1 459 LYS 459 459 ? ? ? A . n A 1 460 ASP 460 460 ? ? ? A . n A 1 461 MET 461 461 ? ? ? A . n A 1 462 GLN 462 462 ? ? ? A . n A 1 463 ASP 463 463 ? ? ? A . n A 1 464 GLN 464 464 ? ? ? A . n A 1 465 VAL 465 465 ? ? ? A . n A 1 466 ASN 466 466 ? ? ? A . n A 1 467 ASP 467 467 ? ? ? A . n A 1 468 LEU 468 468 ? ? ? A . n A 1 469 LEU 469 469 ? ? ? A . n A 1 470 ALA 470 470 ? ? ? A . n A 1 471 PRO 471 471 ? ? ? A . n A 1 472 LEU 472 472 ? ? ? A . n A 1 473 LEU 473 473 ? ? ? A . n A 1 474 GLU 474 474 ? ? ? A . n A 1 475 ALA 475 475 ? ? ? A . n A 1 476 VAL 476 476 ? ? ? A . n A 1 477 ASN 477 477 ? ? ? A . n A 1 478 ARG 478 478 ? ? ? A . n A 1 479 GLY 479 479 ? ? ? A . n A 1 480 ASP 480 480 ? ? ? A . n A 1 481 SER 481 481 ? ? ? A . n A 1 482 GLU 482 482 ? ? ? A . n A 1 483 THR 483 483 ? ? ? A . n A 1 484 GLU 484 484 ? ? ? A . n A 1 485 LEU 485 485 ? ? ? A . n A 1 486 LEU 486 486 ? ? ? A . n A 1 487 GLY 487 487 ? ? ? A . n A 1 488 ALA 488 488 ? ? ? A . n A 1 489 LEU 489 489 ? ? ? A . n A 1 490 ALA 490 490 ? ? ? A . n A 1 491 GLU 491 491 ? ? ? A . n A 1 492 ALA 492 492 ? ? ? A . n A 1 493 PHE 493 493 ? ? ? A . n A 1 494 PRO 494 494 ? ? ? A . n A 1 495 ASP 495 495 ? ? ? A . n A 1 496 MET 496 496 ? ? ? A . n A 1 497 ASP 497 497 ? ? ? A . n A 1 498 ASP 498 498 ? ? ? A . n A 1 499 SER 499 499 ? ? ? A . n A 1 500 ALA 500 500 ? ? ? A . n A 1 501 LEU 501 501 ? ? ? A . n A 1 502 THR 502 502 ? ? ? A . n A 1 503 ASP 503 503 ? ? ? A . n A 1 504 ALA 504 504 ? ? ? A . n A 1 505 LEU 505 505 ? ? ? A . n A 1 506 HIS 506 506 ? ? ? A . n A 1 507 ARG 507 507 ? ? ? A . n A 1 508 LEU 508 508 ? ? ? A . n A 1 509 LEU 509 509 ? ? ? A . n A 1 510 PHE 510 510 ? ? ? A . n A 1 511 ALA 511 511 ? ? ? A . n A 1 512 ALA 512 512 ? ? ? A . n A 1 513 ASP 513 513 ? ? ? A . n A 1 514 THR 514 514 ? ? ? A . n A 1 515 TRP 515 515 ? ? ? A . n A 1 516 GLY 516 516 ? ? ? A . n A 1 517 ARG 517 517 ? ? ? A . n A 1 518 LEU 518 518 ? ? ? A . n A 1 519 HIS 519 519 ? ? ? A . n A 1 520 GLY 520 520 ? ? ? A . n A 1 521 ASN 521 521 ? ? ? A . n A 1 522 LEU 522 522 ? ? ? A . n A 1 523 ASP 523 523 ? ? ? A . n A 1 524 ARG 524 524 ? ? ? A . n A 1 525 ILE 525 525 ? ? ? A . n A 1 526 ASP 526 526 ? ? ? A . n B 2 1 MET 1 1 ? ? ? B . n B 2 2 SER 2 2 2 SER SER B . n B 2 3 TYR 3 3 3 TYR TYR B . n B 2 4 CYS 4 4 4 CYS CYS B . n B 2 5 THR 5 5 5 THR THR B . n B 2 6 LEU 6 6 6 LEU LEU B . n B 2 7 ALA 7 7 7 ALA ALA B . n B 2 8 ASP 8 8 8 ASP ASP B . n B 2 9 LEU 9 9 9 LEU LEU B . n B 2 10 ILE 10 10 10 ILE ILE B . n B 2 11 GLU 11 11 11 GLU GLU B . n B 2 12 GLN 12 12 12 GLN GLN B . n B 2 13 TYR 13 13 13 TYR TYR B . n B 2 14 SER 14 14 14 SER SER B . n B 2 15 GLU 15 15 15 GLU GLU B . n B 2 16 GLN 16 16 16 GLN GLN B . n B 2 17 LYS 17 17 17 LYS LYS B . n B 2 18 ILE 18 18 18 ILE ILE B . n B 2 19 ARG 19 19 19 ARG ARG B . n B 2 20 GLU 20 20 20 GLU GLU B . n B 2 21 VAL 21 21 21 VAL VAL B . n B 2 22 SER 22 22 22 SER SER B . n B 2 23 ASP 23 23 23 ASP ASP B . n B 2 24 ARG 24 24 24 ARG ARG B . n B 2 25 VAL 25 25 25 VAL VAL B . n B 2 26 ASN 26 26 26 ASN ASN B . n B 2 27 LYS 27 27 27 LYS LYS B . n B 2 28 PRO 28 28 28 PRO PRO B . n B 2 29 ALA 29 29 29 ALA ALA B . n B 2 30 THR 30 30 30 THR THR B . n B 2 31 THR 31 31 31 THR THR B . n B 2 32 ILE 32 32 32 ILE ILE B . n B 2 33 ASP 33 33 33 ASP ASP B . n B 2 34 THR 34 34 34 THR THR B . n B 2 35 VAL 35 35 35 VAL VAL B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 VAL 37 37 37 VAL VAL B . n B 2 38 ASP 38 38 38 ASP ASP B . n B 2 39 ARG 39 39 39 ARG ARG B . n B 2 40 ALA 40 40 40 ALA ALA B . n B 2 41 ILE 41 41 41 ILE ILE B . n B 2 42 ALA 42 42 42 ALA ALA B . n B 2 43 ASP 43 43 43 ASP ASP B . n B 2 44 ALA 44 44 44 ALA ALA B . n B 2 45 ASP 45 45 45 ASP ASP B . n B 2 46 SER 46 46 46 SER SER B . n B 2 47 GLU 47 47 47 GLU GLU B . n B 2 48 ILE 48 48 48 ILE ILE B . n B 2 49 ASP 49 49 49 ASP ASP B . n B 2 50 LEU 50 50 50 LEU LEU B . n B 2 51 HIS 51 51 51 HIS HIS B . n B 2 52 LEU 52 52 52 LEU LEU B . n B 2 53 HIS 53 53 53 HIS HIS B . n B 2 54 GLY 54 54 54 GLY GLY B . n B 2 55 ARG 55 55 55 ARG ARG B . n B 2 56 TYR 56 56 56 TYR TYR B . n B 2 57 GLN 57 57 57 GLN GLN B . n B 2 58 LEU 58 58 58 LEU LEU B . n B 2 59 PRO 59 59 59 PRO PRO B . n B 2 60 LEU 60 60 60 LEU LEU B . n B 2 61 ALA 61 61 61 ALA ALA B . n B 2 62 SER 62 62 62 SER SER B . n B 2 63 VAL 63 63 63 VAL VAL B . n B 2 64 PRO 64 64 64 PRO PRO B . n B 2 65 THR 65 65 65 THR THR B . n B 2 66 ALA 66 66 66 ALA ALA B . n B 2 67 LEU 67 67 67 LEU LEU B . n B 2 68 LYS 68 68 68 LYS LYS B . n B 2 69 ARG 69 69 69 ARG ARG B . n B 2 70 ILE 70 70 70 ILE ILE B . n B 2 71 ALA 71 71 71 ALA ALA B . n B 2 72 CYS 72 72 72 CYS CYS B . n B 2 73 GLY 73 73 73 GLY GLY B . n B 2 74 LEU 74 74 74 LEU LEU B . n B 2 75 ALA 75 75 75 ALA ALA B . n B 2 76 TYR 76 76 76 TYR TYR B . n B 2 77 ALA 77 77 77 ALA ALA B . n B 2 78 ASN 78 78 78 ASN ASN B . n B 2 79 LEU 79 79 79 LEU LEU B . n B 2 80 HIS 80 80 80 HIS HIS B . n B 2 81 ILE 81 81 81 ILE ILE B . n B 2 82 VAL 82 82 82 VAL VAL B . n B 2 83 LEU 83 83 83 LEU LEU B . n B 2 84 LYS 84 84 84 LYS LYS B . n B 2 85 GLU 85 85 85 GLU GLU B . n B 2 86 GLU 86 86 86 GLU GLU B . n B 2 87 ASN 87 87 87 ASN ASN B . n B 2 88 PRO 88 88 88 PRO PRO B . n B 2 89 VAL 89 89 89 VAL VAL B . n B 2 90 TYR 90 90 90 TYR TYR B . n B 2 91 LYS 91 91 91 LYS LYS B . n B 2 92 THR 92 92 92 THR THR B . n B 2 93 ALA 93 93 93 ALA ALA B . n B 2 94 GLU 94 94 94 GLU GLU B . n B 2 95 HIS 95 95 95 HIS HIS B . n B 2 96 LEU 96 96 96 LEU LEU B . n B 2 97 ARG 97 97 97 ARG ARG B . n B 2 98 LYS 98 98 98 LYS LYS B . n B 2 99 LEU 99 99 99 LEU LEU B . n B 2 100 LEU 100 100 100 LEU LEU B . n B 2 101 SER 101 101 101 SER SER B . n B 2 102 GLY 102 102 102 GLY GLY B . n B 2 103 ILE 103 103 103 ILE ILE B . n B 2 104 ALA 104 104 104 ALA ALA B . n B 2 105 ASN 105 105 105 ASN ASN B . n B 2 106 GLY 106 106 106 GLY GLY B . n B 2 107 LYS 107 107 107 LYS LYS B . n B 2 108 LEU 108 108 108 LEU LEU B . n B 2 109 SER 109 109 109 SER SER B . n B 2 110 LEU 110 110 110 LEU LEU B . n B 2 111 ALA 111 111 111 ALA ALA B . n B 2 112 LEU 112 112 112 LEU LEU B . n B 2 113 ASP 113 113 113 ASP ASP B . n B 2 114 ALA 114 114 114 ALA ALA B . n B 2 115 ASP 115 115 115 ASP ASP B . n B 2 116 GLY 116 116 116 GLY GLY B . n B 2 117 LYS 117 117 117 LYS LYS B . n B 2 118 PRO 118 118 118 PRO PRO B . n B 2 119 ALA 119 119 119 ALA ALA B . n B 2 120 PRO 120 120 120 PRO PRO B . n B 2 121 VAL 121 121 121 VAL VAL B . n B 2 122 ALA 122 122 122 ALA ALA B . n B 2 123 ASN 123 123 123 ASN ASN B . n B 2 124 THR 124 124 124 THR THR B . n B 2 125 VAL 125 125 125 VAL VAL B . n B 2 126 GLN 126 126 126 GLN GLN B . n B 2 127 ILE 127 127 127 ILE ILE B . n B 2 128 SER 128 128 128 SER SER B . n B 2 129 GLU 129 129 129 GLU GLU B . n B 2 130 GLY 130 130 130 GLY GLY B . n B 2 131 ARG 131 131 131 ARG ARG B . n B 2 132 ASN 132 132 132 ASN ASN B . n B 2 133 ASP 133 133 133 ASP ASP B . n B 2 134 TRP 134 134 134 TRP TRP B . n B 2 135 GLY 135 135 135 GLY GLY B . n B 2 136 ALA 136 136 136 ALA ALA B . n B 2 137 ASP 137 137 137 ASP ASP B . n B 2 138 TRP 138 138 138 TRP TRP B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8RKA _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8RKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8RKA _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8RKA _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 51576 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.479 ? 70128 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 3.663 ? 7080 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.036 ? 7800 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 9252 ? f_plane_restr ? ? # _struct.entry_id 8RKA _struct.title 'Connector complex of empty bacteriophage JBD30 particle computed in C12 symmetry' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8RKA _struct_keywords.text 'bacteriophage JBD30, virion, connector complex, portal, adaptor, empty particle, VIRUS' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP L7P7R0_9CAUD L7P7R0 ? 1 ;MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSW FQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYP PGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSDPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALG QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVY DKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALASLPAKDMQDQVNDLLAPLLEAVNRGD SETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID ; 1 2 UNP L7P846_9CAUD L7P846 ? 2 ;MSYCTLADLIEQYSEQKIREVSDRVNKPATTIDTVIVDRAIADADSEIDLHLHGRYQLPLASVPTALKRIACGLAYANLH IVLKEENPVYKTAEHLRKLLSGIANGKLSLALDADGKPAPVANTVQISEGRNDWGADW ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8RKA A 1 ? 526 ? L7P7R0 1 ? 526 ? 1 526 2 2 8RKA B 1 ? 138 ? L7P846 1 ? 138 ? 1 138 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.16_b42360.' _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 1 2 A,B 1 3 A,B 1 4 A,B 1 5 A,B 1 6 A,B 1 7 A,B 1 8 A,B 1 9 A,B 1 10 A,B 1 11 A,B 1 12 A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 2 'point symmetry operation' ? ? 0.866025 -0.5 0.0 135.19381 0.5 0.866025 0.0 -78.05419 0.0 0.0 1.0 0.0 3 'point symmetry operation' ? ? 0.5 -0.866025 0.0 291.30219 0.866025 0.5 0.0 -78.05419 0.0 0.0 1.0 0.0 4 'point symmetry operation' ? ? 0.0 -1.0 0.0 426.496 1.0 0.0 0.0 0.0 0.0 0.0 1.0 0.0 5 'point symmetry operation' ? ? -0.5 -0.866025 0.0 504.55019 0.866025 -0.5 0.0 135.19381 0.0 0.0 1.0 0.0 6 'point symmetry operation' ? ? -0.866025 -0.5 0.0 504.55019 0.5 -0.866025 0.0 291.30219 0.0 0.0 1.0 0.0 7 'point symmetry operation' ? ? -1.0 0.0 0.0 426.496 0.0 -1.0 0.0 426.496 0.0 0.0 1.0 0.0 8 'point symmetry operation' ? ? -0.866025 0.5 0.0 291.30219 -0.5 -0.866025 0.0 504.55019 0.0 0.0 1.0 0.0 9 'point symmetry operation' ? ? -0.5 0.866025 0.0 135.19381 -0.866025 -0.5 0.0 504.55019 0.0 0.0 1.0 0.0 10 'point symmetry operation' ? ? 0.0 1.0 0.0 0.0 -1.0 0.0 0.0 426.496 0.0 0.0 1.0 0.0 11 'point symmetry operation' ? ? 0.5 0.866025 0.0 -78.05419 -0.866025 0.5 0.0 291.30219 0.0 0.0 1.0 0.0 12 'point symmetry operation' ? ? 0.86603 0.50000 0.00000 -78.05419 -0.50000 0.86603 0.00000 135.19381 0.00000 0.00000 1.00000 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLN A 15 ? GLU A 19 ? GLN A 15 GLU A 19 5 ? 5 HELX_P HELX_P2 AA2 PRO A 20 ? ARG A 24 ? PRO A 20 ARG A 24 5 ? 5 HELX_P HELX_P3 AA3 LEU A 25 ? LYS A 30 ? LEU A 25 LYS A 30 1 ? 6 HELX_P HELX_P4 AA4 THR A 41 ? GLN A 54 ? THR A 41 GLN A 54 1 ? 14 HELX_P HELX_P5 AA5 ASN A 56 ? ASP A 71 ? ASN A 56 ASP A 71 1 ? 16 HELX_P HELX_P6 AA6 ASP A 71 ? GLY A 87 ? ASP A 71 GLY A 87 1 ? 17 HELX_P HELX_P7 AA7 SER A 99 ? LEU A 116 ? SER A 99 LEU A 116 1 ? 18 HELX_P HELX_P8 AA8 GLY A 118 ? LEU A 127 ? GLY A 118 LEU A 127 1 ? 10 HELX_P HELX_P9 AA9 ASP A 128 ? GLY A 133 ? ASP A 128 GLY A 133 1 ? 6 HELX_P HELX_P10 AB1 PRO A 157 ? SER A 159 ? PRO A 157 SER A 159 5 ? 3 HELX_P HELX_P11 AB2 VAL A 200 ? GLY A 204 ? VAL A 200 GLY A 204 5 ? 5 HELX_P HELX_P12 AB3 LEU A 205 ? TYR A 230 ? LEU A 205 TYR A 230 1 ? 26 HELX_P HELX_P13 AB4 ALA A 244 ? GLY A 259 ? ALA A 244 GLY A 259 1 ? 16 HELX_P HELX_P14 AB5 SER A 282 ? GLY A 302 ? SER A 282 GLY A 302 1 ? 21 HELX_P HELX_P15 AB6 GLY A 315 ? LEU A 346 ? GLY A 315 LEU A 346 1 ? 32 HELX_P HELX_P16 AB7 LEU A 346 ? ARG A 355 ? LEU A 346 ARG A 355 1 ? 10 HELX_P HELX_P17 AB8 ASP A 360 ? ALA A 364 ? ASP A 360 ALA A 364 5 ? 5 HELX_P HELX_P18 AB9 ASP A 376 ? GLY A 391 ? ASP A 376 GLY A 391 1 ? 16 HELX_P HELX_P19 AC1 PRO A 395 ? GLY A 404 ? PRO A 395 GLY A 404 1 ? 10 HELX_P HELX_P20 AC2 THR B 5 ? SER B 14 ? THR B 5 SER B 14 1 ? 10 HELX_P HELX_P21 AC3 SER B 14 ? ASP B 23 ? SER B 14 ASP B 23 1 ? 10 HELX_P HELX_P22 AC4 ASP B 33 ? HIS B 53 ? ASP B 33 HIS B 53 1 ? 21 HELX_P HELX_P23 AC5 PRO B 64 ? LEU B 79 ? PRO B 64 LEU B 79 1 ? 16 HELX_P HELX_P24 AC6 ASN B 87 ? ASN B 105 ? ASN B 87 ASN B 105 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 27 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 27 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 28 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 28 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.45 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA4 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 90 ? GLU A 93 ? TRP A 90 GLU A 93 AA1 2 ARG A 366 ? PHE A 369 ? ARG A 366 PHE A 369 AA2 1 TRP A 148 ? ARG A 156 ? TRP A 148 ARG A 156 AA2 2 SER A 135 ? LEU A 143 ? SER A 135 LEU A 143 AA2 3 TRP A 188 ? HIS A 191 ? TRP A 188 HIS A 191 AA3 1 PHE A 161 ? ASN A 164 ? PHE A 161 ASN A 164 AA3 2 ASP A 167 ? LEU A 173 ? ASP A 167 LEU A 173 AA3 3 GLU A 181 ? ALA A 182 ? GLU A 181 ALA A 182 AA4 1 ARG A 235 ? LYS A 238 ? ARG A 235 LYS A 238 AA4 2 ALA A 271 ? PHE A 274 ? ALA A 271 PHE A 274 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 91 ? N ALA A 91 O VAL A 368 ? O VAL A 368 AA2 1 2 O LEU A 151 ? O LEU A 151 N GLU A 140 ? N GLU A 140 AA2 2 3 N ILE A 137 ? N ILE A 137 O ILE A 189 ? O ILE A 189 AA3 1 2 N ASN A 164 ? N ASN A 164 O GLU A 170 ? O GLU A 170 AA3 2 3 N LEU A 173 ? N LEU A 173 O GLU A 181 ? O GLU A 181 AA4 1 2 N LYS A 238 ? N LYS A 238 O ALA A 271 ? O ALA A 271 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 281 ? ? OD1 A ASP 283 ? ? 2.19 2 1 OD1 A ASN 169 ? ? NH2 A ARG 192 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 97 ? ? 39.08 51.39 2 1 GLN A 144 ? ? -101.09 74.25 3 1 SER B 14 ? ? 65.11 166.68 4 1 ALA B 114 ? ? -126.37 -52.49 5 1 PRO B 118 ? ? -66.96 -174.69 6 1 ALA B 122 ? ? -92.51 36.60 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8RKA _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8RKA _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.12 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 1142 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10 mM NaCl, 10 mM MgSo4, 50 mM Tris-HCl' _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.name 'Pseudomonas phage JBD30' _em_entity_assembly.details 'Phage JBD30 was propagated in P. aeruginosa strain BAA-28 and purified using CsCl gradient.' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_image_scans.entry_id 8RKA _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8RKA _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 600 _em_imaging.nominal_defocus_max 1600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.details 'Gatan Solarus II' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.virus_type VIRION _em_virus_entity.virus_isolate STRAIN _em_virus_entity.entity_assembly_id 1 _em_virus_entity.enveloped NO _em_virus_entity.empty NO _em_virus_entity.details ? # _em_vitrification.entry_id 8RKA _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277.15 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'blotting time 2s, blotting force 0, waiting time 15s' # _em_experiment.entry_id 8RKA _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8RKA _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C12 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A ILE 4 ? A ILE 4 5 1 Y 1 A LYS 410 ? A LYS 410 6 1 Y 1 A ASN 411 ? A ASN 411 7 1 Y 1 A GLU 412 ? A GLU 412 8 1 Y 1 A PRO 413 ? A PRO 413 9 1 Y 1 A VAL 414 ? A VAL 414 10 1 Y 1 A LEU 415 ? A LEU 415 11 1 Y 1 A ARG 416 ? A ARG 416 12 1 Y 1 A SER 417 ? A SER 417 13 1 Y 1 A ALA 418 ? A ALA 418 14 1 Y 1 A ALA 419 ? A ALA 419 15 1 Y 1 A GLN 420 ? A GLN 420 16 1 Y 1 A PRO 421 ? A PRO 421 17 1 Y 1 A ALA 422 ? A ALA 422 18 1 Y 1 A ILE 423 ? A ILE 423 19 1 Y 1 A LEU 424 ? A LEU 424 20 1 Y 1 A SER 425 ? A SER 425 21 1 Y 1 A ARG 426 ? A ARG 426 22 1 Y 1 A GLN 427 ? A GLN 427 23 1 Y 1 A HIS 428 ? A HIS 428 24 1 Y 1 A GLY 429 ? A GLY 429 25 1 Y 1 A GLN 430 ? A GLN 430 26 1 Y 1 A ARG 431 ? A ARG 431 27 1 Y 1 A VAL 432 ? A VAL 432 28 1 Y 1 A ALA 433 ? A ALA 433 29 1 Y 1 A ALA 434 ? A ALA 434 30 1 Y 1 A LEU 435 ? A LEU 435 31 1 Y 1 A ALA 436 ? A ALA 436 32 1 Y 1 A THR 437 ? A THR 437 33 1 Y 1 A ILE 438 ? A ILE 438 34 1 Y 1 A VAL 439 ? A VAL 439 35 1 Y 1 A GLY 440 ? A GLY 440 36 1 Y 1 A PRO 441 ? A PRO 441 37 1 Y 1 A ARG 442 ? A ARG 442 38 1 Y 1 A TYR 443 ? A TYR 443 39 1 Y 1 A GLY 444 ? A GLY 444 40 1 Y 1 A ASP 445 ? A ASP 445 41 1 Y 1 A GLN 446 ? A GLN 446 42 1 Y 1 A GLN 447 ? A GLN 447 43 1 Y 1 A ALA 448 ? A ALA 448 44 1 Y 1 A LEU 449 ? A LEU 449 45 1 Y 1 A ASP 450 ? A ASP 450 46 1 Y 1 A LYS 451 ? A LYS 451 47 1 Y 1 A ALA 452 ? A ALA 452 48 1 Y 1 A LEU 453 ? A LEU 453 49 1 Y 1 A ALA 454 ? A ALA 454 50 1 Y 1 A SER 455 ? A SER 455 51 1 Y 1 A LEU 456 ? A LEU 456 52 1 Y 1 A PRO 457 ? A PRO 457 53 1 Y 1 A ALA 458 ? A ALA 458 54 1 Y 1 A LYS 459 ? A LYS 459 55 1 Y 1 A ASP 460 ? A ASP 460 56 1 Y 1 A MET 461 ? A MET 461 57 1 Y 1 A GLN 462 ? A GLN 462 58 1 Y 1 A ASP 463 ? A ASP 463 59 1 Y 1 A GLN 464 ? A GLN 464 60 1 Y 1 A VAL 465 ? A VAL 465 61 1 Y 1 A ASN 466 ? A ASN 466 62 1 Y 1 A ASP 467 ? A ASP 467 63 1 Y 1 A LEU 468 ? A LEU 468 64 1 Y 1 A LEU 469 ? A LEU 469 65 1 Y 1 A ALA 470 ? A ALA 470 66 1 Y 1 A PRO 471 ? A PRO 471 67 1 Y 1 A LEU 472 ? A LEU 472 68 1 Y 1 A LEU 473 ? A LEU 473 69 1 Y 1 A GLU 474 ? A GLU 474 70 1 Y 1 A ALA 475 ? A ALA 475 71 1 Y 1 A VAL 476 ? A VAL 476 72 1 Y 1 A ASN 477 ? A ASN 477 73 1 Y 1 A ARG 478 ? A ARG 478 74 1 Y 1 A GLY 479 ? A GLY 479 75 1 Y 1 A ASP 480 ? A ASP 480 76 1 Y 1 A SER 481 ? A SER 481 77 1 Y 1 A GLU 482 ? A GLU 482 78 1 Y 1 A THR 483 ? A THR 483 79 1 Y 1 A GLU 484 ? A GLU 484 80 1 Y 1 A LEU 485 ? A LEU 485 81 1 Y 1 A LEU 486 ? A LEU 486 82 1 Y 1 A GLY 487 ? A GLY 487 83 1 Y 1 A ALA 488 ? A ALA 488 84 1 Y 1 A LEU 489 ? A LEU 489 85 1 Y 1 A ALA 490 ? A ALA 490 86 1 Y 1 A GLU 491 ? A GLU 491 87 1 Y 1 A ALA 492 ? A ALA 492 88 1 Y 1 A PHE 493 ? A PHE 493 89 1 Y 1 A PRO 494 ? A PRO 494 90 1 Y 1 A ASP 495 ? A ASP 495 91 1 Y 1 A MET 496 ? A MET 496 92 1 Y 1 A ASP 497 ? A ASP 497 93 1 Y 1 A ASP 498 ? A ASP 498 94 1 Y 1 A SER 499 ? A SER 499 95 1 Y 1 A ALA 500 ? A ALA 500 96 1 Y 1 A LEU 501 ? A LEU 501 97 1 Y 1 A THR 502 ? A THR 502 98 1 Y 1 A ASP 503 ? A ASP 503 99 1 Y 1 A ALA 504 ? A ALA 504 100 1 Y 1 A LEU 505 ? A LEU 505 101 1 Y 1 A HIS 506 ? A HIS 506 102 1 Y 1 A ARG 507 ? A ARG 507 103 1 Y 1 A LEU 508 ? A LEU 508 104 1 Y 1 A LEU 509 ? A LEU 509 105 1 Y 1 A PHE 510 ? A PHE 510 106 1 Y 1 A ALA 511 ? A ALA 511 107 1 Y 1 A ALA 512 ? A ALA 512 108 1 Y 1 A ASP 513 ? A ASP 513 109 1 Y 1 A THR 514 ? A THR 514 110 1 Y 1 A TRP 515 ? A TRP 515 111 1 Y 1 A GLY 516 ? A GLY 516 112 1 Y 1 A ARG 517 ? A ARG 517 113 1 Y 1 A LEU 518 ? A LEU 518 114 1 Y 1 A HIS 519 ? A HIS 519 115 1 Y 1 A GLY 520 ? A GLY 520 116 1 Y 1 A ASN 521 ? A ASN 521 117 1 Y 1 A LEU 522 ? A LEU 522 118 1 Y 1 A ASP 523 ? A ASP 523 119 1 Y 1 A ARG 524 ? A ARG 524 120 1 Y 1 A ILE 525 ? A ILE 525 121 1 Y 1 A ASP 526 ? A ASP 526 122 1 Y 1 B MET 1 ? B MET 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2023-12-23 _em_admin.deposition_site PDBE _em_admin.entry_id 8RKA _em_admin.last_update 2024-08-28 _em_admin.map_release_date 2024-08-14 _em_admin.title 'Connector complex of empty bacteriophage JBD30 particle computed in C12 symmetry' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 10 mM NaCl 1 'sodium chloride' 1 10 mM MgSO4 2 'magnesium sulphate' 1 50 mM Tris-HCl 3 'tris hydrochloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.874 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1223260 _em_entity_assembly_naturalsource.organism 'Pseudomonas phage JBD30' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 2 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 34 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 12356 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 2666 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? EMAN2 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' 'ctf estimation' 4 1 ? ? Gctf 1.06 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? RELION 3.1 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 3.1 CLASSIFICATION ? 12 1 ? ? RELION 3.1 RECONSTRUCTION ? 13 1 ? ? RELION 3.1 # _em_specimen.concentration ? _em_specimen.details 'phage titer 10^11 PFU/ml' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.id 1 _em_virus_natural_host.ncbi_tax_id 287 _em_virus_natural_host.organism 'Pseudomonas aeruginosa' _em_virus_natural_host.strain BAA-28 # _em_virus_shell.diameter 340 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.id 1 _em_virus_shell.name 'JBD30 capsid' _em_virus_shell.triangulation 7 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Ministry of Education, Youth and Sports of the Czech Republic' 'Czech Republic' LX22NPO5103 1 'European Research Council (ERC)' 'European Union' 101043452 2 # _atom_sites.entry_id 8RKA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_