HEADER SIGNALING PROTEIN 08-JAN-24 8RMJ TITLE DROSOPHILA SEMAPHORIN 2B IN COMPLEX WITH GLYCOSAMINOGLYCAN MIMIC SOS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FI18622P1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SEMAPHORIN 2B,ISOFORM A,ISOFORM C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SEMA2B, CG30322, CG33960-RA, CG4383, DMEL\CG33960, SEMA-2B, SOURCE 6 SEMA-2B, SEMA2B, SEMAIIB, CG33960, DMEL_CG33960; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHR-CMV-TETO2-IRES-EMGFP KEYWDS SEMAPHORIN, GLYCOSAMINOGLYCAN, AXON GUIDANCE, BRIDGE MODEL, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.NOURISANAMI,M.SOBOL,D.ROZBESKY REVDAT 1 31-JUL-24 8RMJ 0 JRNL AUTH F.NOURISANAMI,M.SOBOL,Z.LI,M.HORVATH,K.KOWALSKA,A.KUMAR, JRNL AUTH 2 J.VLASAK,N.KOUPILOVA,D.J.LUGINBUHL,L.LUO,D.ROZBESKY JRNL TITL MOLECULAR MECHANISMS OF PROTEOGLYCAN-MEDIATED SEMAPHORIN JRNL TITL 2 SIGNALING IN AXON GUIDANCE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 55121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 39042673 JRNL DOI 10.1073/PNAS.2402755121 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 56.7 REMARK 3 NUMBER OF REFLECTIONS : 23304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6700 - 5.8000 1.00 4594 260 0.2424 0.2695 REMARK 3 2 5.8000 - 4.6100 0.92 4071 217 0.2263 0.2619 REMARK 3 3 4.6100 - 4.0300 0.77 3352 189 0.2294 0.2460 REMARK 3 4 4.0300 - 3.6600 0.63 2713 139 0.2567 0.2930 REMARK 3 5 3.6600 - 3.4000 0.53 2272 135 0.2799 0.3085 REMARK 3 6 3.4000 - 3.2000 0.45 1943 91 0.3335 0.3804 REMARK 3 7 3.2000 - 3.0400 0.37 1572 78 0.3302 0.2947 REMARK 3 8 3.0400 - 2.9000 0.27 1132 63 0.3630 0.3933 REMARK 3 9 2.9000 - 2.7900 0.11 462 21 0.3995 0.6358 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.397 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.964 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 94.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5475 REMARK 3 ANGLE : 0.546 7448 REMARK 3 CHIRALITY : 0.045 878 REMARK 3 PLANARITY : 0.004 901 REMARK 3 DIHEDRAL : 10.666 2126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23325 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 157.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 5% PEG 6000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.25267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.12633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.18950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.06317 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 140.31583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.25267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.12633 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.06317 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.18950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 140.31583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 90.74450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -157.17408 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -28.06317 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 465 GLY A 34 REMARK 465 TYR A 35 REMARK 465 GLU A 36 REMARK 465 ASN A 37 REMARK 465 THR A 38 REMARK 465 TRP A 39 REMARK 465 SER A 51 REMARK 465 SER A 52 REMARK 465 ALA A 53 REMARK 465 ALA A 54 REMARK 465 HIS A 55 REMARK 465 HIS A 56 REMARK 465 LEU A 57 REMARK 465 ARG A 58 REMARK 465 HIS A 59 REMARK 465 HIS A 60 REMARK 465 GLY A 666 REMARK 465 VAL A 667 REMARK 465 THR A 668 REMARK 465 VAL A 669 REMARK 465 ASP A 670 REMARK 465 ALA A 671 REMARK 465 HIS A 672 REMARK 465 ARG A 673 REMARK 465 CYS A 674 REMARK 465 SER A 675 REMARK 465 PRO A 676 REMARK 465 PRO A 677 REMARK 465 SER A 678 REMARK 465 GLN A 679 REMARK 465 GLY A 680 REMARK 465 THR A 681 REMARK 465 LYS A 682 REMARK 465 HIS A 683 REMARK 465 HIS A 684 REMARK 465 HIS A 685 REMARK 465 HIS A 686 REMARK 465 HIS A 687 REMARK 465 HIS A 688 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 41 -151.15 -114.18 REMARK 500 PRO A 71 91.84 -66.41 REMARK 500 THR A 76 113.86 69.28 REMARK 500 ASN A 101 96.67 -160.91 REMARK 500 ASP A 110 67.24 -112.72 REMARK 500 ASN A 158 65.48 60.47 REMARK 500 ASN A 161 84.97 -153.46 REMARK 500 THR A 218 -146.38 -163.21 REMARK 500 TYR A 306 -112.53 58.28 REMARK 500 ILE A 308 56.70 -100.05 REMARK 500 ASP A 409 84.27 59.20 REMARK 500 THR A 448 -117.42 -120.42 REMARK 500 SER A 499 149.49 -170.68 REMARK 500 ASP A 568 85.82 -152.47 REMARK 500 LYS A 608 50.85 -101.47 REMARK 500 THR A 630 -71.20 -110.42 REMARK 500 ALA A 644 74.88 57.06 REMARK 500 ASN A 646 -157.52 -155.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RMJ A 35 679 UNP A1ZAF5 A1ZAF5_DROME 83 726 SEQADV 8RMJ GLU A 32 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ THR A 33 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ GLY A 34 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ LYS A 132 UNP A1ZAF5 INSERTION SEQADV 8RMJ GLY A 680 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ THR A 681 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ LYS A 682 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ HIS A 683 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ HIS A 684 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ HIS A 685 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ HIS A 686 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ HIS A 687 UNP A1ZAF5 EXPRESSION TAG SEQADV 8RMJ HIS A 688 UNP A1ZAF5 EXPRESSION TAG SEQRES 1 A 657 GLU THR GLY TYR GLU ASN THR TRP ASN LEU TYR TYR GLU SEQRES 2 A 657 PRO PRO CYS CYS THR GLY SER SER ALA ALA HIS HIS LEU SEQRES 3 A 657 ARG HIS HIS LYS GLU HIS VAL GLN ASP PHE SER CYS GLY SEQRES 4 A 657 PRO LEU HIS TYR LYS THR PHE TYR MET ASP GLU ARG ASN SEQRES 5 A 657 ASN ALA LEU TYR VAL GLY ALA MET ASP ARG ILE PHE ARG SEQRES 6 A 657 LEU ASN LEU ARG ASN ILE SER GLN SER ILE CYS GLU ARG SEQRES 7 A 657 ASP VAL LEU ILE LEU GLU PRO THR GLY SER ASP ILE LEU SEQRES 8 A 657 ASN CYS VAL SER LYS GLY LYS ARG GLU LYS VAL GLU CYS SEQRES 9 A 657 ARG ASN HIS ILE ARG VAL ILE GLN PRO MET ASN PHE ASN SEQRES 10 A 657 GLY GLN LYS LEU TYR VAL CYS GLY THR ASN ALA HIS ASN SEQRES 11 A 657 PRO LYS ASP TYR VAL ILE ASN ALA ASN LEU THR HIS LEU SEQRES 12 A 657 PRO ARG SER GLN TYR VAL PRO GLY ILE GLY LEU GLY ILE SEQRES 13 A 657 GLY LYS CYS PRO TYR ASP PRO ALA ASP ASN SER THR ALA SEQRES 14 A 657 VAL TYR VAL GLU ASN GLY ASN PRO PHE GLY LEU PRO ALA SEQRES 15 A 657 LEU TYR ALA GLY THR ASN ALA GLU PHE THR LYS ALA ASP SEQRES 16 A 657 SER VAL ILE PHE ARG SER ASP LEU TYR ASN LEU THR ASN SEQRES 17 A 657 GLY ARG LYS GLU ALA ASN PHE LYS ARG THR VAL LYS TYR SEQRES 18 A 657 ASP SER LYS LEU LEU ASP LYS PRO ASN PHE VAL GLY SER SEQRES 19 A 657 PHE GLU ILE GLY GLU PHE VAL TYR PHE PHE PHE ARG GLU SEQRES 20 A 657 HIS ALA VAL GLU TYR ILE ASN CYS GLY LYS ALA VAL TYR SEQRES 21 A 657 SER ARG VAL ALA ARG VAL CYS LYS ASN ASP ARG GLY GLY SEQRES 22 A 657 LYS TYR MET ILE SER GLN ASN TRP ALA THR TYR LEU LYS SEQRES 23 A 657 ALA ARG MET ASN CYS SER ILE SER SER GLU PHE PRO PHE SEQRES 24 A 657 TYR PHE ASN GLU ILE GLN SER VAL TYR LYS MET PRO THR SEQRES 25 A 657 ASP ASP THR LYS PHE TYR ALA THR PHE THR THR ASN THR SEQRES 26 A 657 ASN GLY LEU ILE GLY SER ALA VAL CYS SER TYR ASP ILE SEQRES 27 A 657 ARG ASP ILE ASN ALA ALA PHE ASP GLY LYS PHE LYS GLU SEQRES 28 A 657 GLN ALA THR SER ASN SER ALA TRP LEU PRO VAL LEU ASN SEQRES 29 A 657 SER LYS VAL PRO GLU PRO ARG PRO GLY THR CYS HIS ASN SEQRES 30 A 657 ASP THR ALA THR LEU PRO ASP SER VAL LEU ASN PHE ILE SEQRES 31 A 657 ARG LYS HIS PRO LEU MET ASP LYS ALA VAL ASP HIS GLU SEQRES 32 A 657 PHE GLY ASN PRO VAL PHE PHE LYS ARG ASP VAL ILE LEU SEQRES 33 A 657 THR LYS LEU VAL VAL ASP LYS ILE ARG ILE ASP LYS LEU SEQRES 34 A 657 ASN GLN GLU PHE LEU VAL TYR PHE VAL ALA THR THR SER SEQRES 35 A 657 GLY HIS ILE TYR LYS ILE VAL GLN PHE MET HIS TYR GLY SEQRES 36 A 657 GLN ARG HIS SER ASN LEU VAL ASP ILE PHE GLU ALA SER SEQRES 37 A 657 PRO HIS SER GLU PRO ILE ARG GLU MET THR LEU SER HIS SEQRES 38 A 657 LYS THR GLY SER LEU TYR VAL ALA THR ASP HIS GLN VAL SEQRES 39 A 657 LYS GLN ILE ASP ILE ALA MET CYS ALA ARG ARG TYR ASP SEQRES 40 A 657 SER CYS PHE ARG CYS VAL SER ASP PRO TYR CYS GLY TRP SEQRES 41 A 657 ASP LYS ASP VAL ASN ALA CYS ARG PRO TYR GLN LEU GLY SEQRES 42 A 657 LEU LEU GLN ASP VAL ALA ASN GLU THR SER GLY ILE CYS SEQRES 43 A 657 ASP THR SER VAL LEU ARG LYS LYS VAL THR SER SER TYR SEQRES 44 A 657 GLY GLN THR LEU HIS LEU SER CYS PHE VAL LYS MET PRO SEQRES 45 A 657 GLU VAL LEU ARG LYS LYS GLN THR ARG TRP TYR HIS HIS SEQRES 46 A 657 SER THR GLU LYS GLY ARG TYR GLU VAL ARG TYR THR PRO SEQRES 47 A 657 THR LYS TYR ILE ASP THR ASN GLU GLY GLY LEU VAL LEU SEQRES 48 A 657 LEU ALA VAL ASN GLU GLY ASP GLY GLY ARG TYR ASP SER SEQRES 49 A 657 TYR LEU ASP GLY THR LEU LEU CYS SER TYR GLY VAL THR SEQRES 50 A 657 VAL ASP ALA HIS ARG CYS SER PRO PRO SER GLN GLY THR SEQRES 51 A 657 LYS HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET MAN C 7 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET MAN D 7 11 HET MAN D 8 11 HET MAN D 9 11 HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET GU4 F 1 27 HET YYJ F 2 28 HET GU4 G 1 27 HET YYJ G 2 28 HET NAG A 701 14 HET NAG A 702 14 HET NAG A 703 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOPYRANOSE HETNAM YYJ 1,3,4,6-TETRA-O-SULFO-BETA-D-FRUCTOFURANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GU4 2,3,4,6-TETRA-O-SULFONATO-ALPHA-D-GLUCOSE; 2,3,4,6- HETSYN 2 GU4 TETRA-O-SULFONATO-D-GLUCOSE; 2,3,4,6-TETRA-O- HETSYN 3 GU4 SULFONATO-GLUCOSE FORMUL 2 NAG 11(C8 H15 N O6) FORMUL 3 BMA 3(C6 H12 O6) FORMUL 3 MAN 11(C6 H12 O6) FORMUL 6 GU4 2(C6 H12 O18 S4) FORMUL 6 YYJ 2(C6 H12 O18 S4) HELIX 1 AA1 ASN A 101 SER A 105 5 5 HELIX 2 AA2 THR A 117 GLY A 128 1 12 HELIX 3 AA3 ASN A 207 LEU A 211 5 5 HELIX 4 AA4 VAL A 281 ILE A 284 5 4 HELIX 5 AA5 ILE A 369 ASP A 377 1 9 HELIX 6 AA6 LEU A 394 VAL A 398 5 5 HELIX 7 AA7 ASP A 409 LEU A 413 5 5 HELIX 8 AA8 PRO A 414 HIS A 424 1 11 HELIX 9 AA9 HIS A 433 ASN A 437 5 5 HELIX 10 AB1 MET A 532 TYR A 537 1 6 HELIX 11 AB2 SER A 539 VAL A 544 1 6 HELIX 12 AB3 GLY A 575 SER A 580 5 6 HELIX 13 AB4 PRO A 603 ARG A 607 5 5 SHEET 1 AA1 4 VAL A 64 PHE A 67 0 SHEET 2 AA1 4 VAL A 525 ASP A 529 -1 O GLN A 527 N GLN A 65 SHEET 3 AA1 4 SER A 516 ALA A 520 -1 N LEU A 517 O ILE A 528 SHEET 4 AA1 4 GLU A 507 SER A 511 -1 N GLU A 507 O ALA A 520 SHEET 1 AA2 4 LYS A 75 ASP A 80 0 SHEET 2 AA2 4 ALA A 85 ALA A 90 -1 O TYR A 87 N TYR A 78 SHEET 3 AA2 4 ARG A 93 ASN A 98 -1 O PHE A 95 N VAL A 88 SHEET 4 AA2 4 VAL A 111 ILE A 113 -1 O LEU A 112 N ILE A 94 SHEET 1 AA3 3 ILE A 139 ASN A 146 0 SHEET 2 AA3 3 GLN A 150 GLY A 156 -1 O LYS A 151 N MET A 145 SHEET 3 AA3 3 LYS A 163 ILE A 167 -1 O ILE A 167 N LEU A 152 SHEET 1 AA4 4 THR A 199 VAL A 203 0 SHEET 2 AA4 4 ALA A 213 THR A 218 -1 O TYR A 215 N VAL A 201 SHEET 3 AA4 4 VAL A 228 ARG A 231 -1 O PHE A 230 N ALA A 216 SHEET 4 AA4 4 LYS A 247 ARG A 248 -1 O LYS A 247 N ARG A 231 SHEET 1 AA5 2 LEU A 234 TYR A 235 0 SHEET 2 AA5 2 LYS A 242 ALA A 244 -1 O GLU A 243 N LEU A 234 SHEET 1 AA6 4 ASN A 261 ILE A 268 0 SHEET 2 AA6 4 PHE A 271 HIS A 279 -1 O PHE A 275 N GLY A 264 SHEET 3 AA6 4 VAL A 290 CYS A 298 -1 O ARG A 293 N PHE A 276 SHEET 4 AA6 4 LEU A 316 ARG A 319 -1 O LEU A 316 N ARG A 296 SHEET 1 AA7 2 SER A 323 ILE A 324 0 SHEET 2 AA7 2 PHE A 330 TYR A 331 -1 O PHE A 330 N ILE A 324 SHEET 1 AA8 4 GLU A 334 TYR A 339 0 SHEET 2 AA8 4 LYS A 347 THR A 353 -1 O THR A 353 N GLU A 334 SHEET 3 AA8 4 GLY A 361 ASP A 368 -1 O ALA A 363 N PHE A 352 SHEET 4 AA8 4 PHE A 440 ARG A 443 -1 O PHE A 440 N VAL A 364 SHEET 1 AA9 2 LYS A 381 GLN A 383 0 SHEET 2 AA9 2 TRP A 390 PRO A 392 -1 O LEU A 391 N GLU A 382 SHEET 1 AB1 4 LEU A 447 ILE A 457 0 SHEET 2 AB1 4 GLN A 462 THR A 471 -1 O PHE A 468 N VAL A 451 SHEET 3 AB1 4 HIS A 475 HIS A 484 -1 O ILE A 479 N TYR A 467 SHEET 4 AB1 4 GLN A 487 GLU A 497 -1 O ASP A 494 N LYS A 478 SHEET 1 AB2 2 CYS A 549 ASP A 552 0 SHEET 2 AB2 2 ALA A 557 PRO A 560 -1 O ARG A 559 N GLY A 550 SHEET 1 AB3 5 LEU A 582 ARG A 583 0 SHEET 2 AB3 5 LEU A 661 TYR A 665 1 O SER A 664 N LEU A 582 SHEET 3 AB3 5 ARG A 652 LEU A 657 -1 N SER A 655 O LEU A 662 SHEET 4 AB3 5 THR A 611 SER A 617 -1 N TYR A 614 O ASP A 654 SHEET 5 AB3 5 GLY A 621 GLU A 624 -1 O GLY A 621 N SER A 617 SHEET 1 AB4 3 LEU A 594 LEU A 596 0 SHEET 2 AB4 3 LEU A 640 LEU A 642 -1 O LEU A 640 N LEU A 596 SHEET 3 AB4 3 TYR A 632 ASP A 634 -1 N ILE A 633 O VAL A 641 SSBOND 1 CYS A 47 CYS A 48 1555 1555 2.03 SSBOND 2 CYS A 69 CYS A 107 1555 1555 2.03 SSBOND 3 CYS A 124 CYS A 135 1555 1555 2.03 SSBOND 4 CYS A 155 CYS A 190 1555 1555 2.03 SSBOND 5 CYS A 286 CYS A 286 1555 12544 2.04 SSBOND 6 CYS A 298 CYS A 406 1555 1555 2.03 SSBOND 7 CYS A 322 CYS A 365 1555 1555 2.04 SSBOND 8 CYS A 533 CYS A 549 1555 1555 2.03 SSBOND 9 CYS A 540 CYS A 577 1555 1555 2.03 SSBOND 10 CYS A 543 CYS A 558 1555 1555 2.03 SSBOND 11 CYS A 598 CYS A 663 1555 1555 2.03 LINK ND2 ASN A 101 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 170 C1 NAG A 701 1555 1555 1.44 LINK ND2 ASN A 197 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 236 C1 NAG A 702 1555 1555 1.44 LINK ND2 ASN A 321 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 408 C1 NAG A 703 1555 1555 1.45 LINK ND2 ASN A 571 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 4 1555 1555 1.44 LINK O3 BMA C 3 C1 MAN C 7 1555 1555 1.45 LINK O3 MAN C 4 C1 MAN C 5 1555 1555 1.44 LINK O6 MAN C 4 C1 MAN C 6 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O6 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O3 BMA D 3 C1 MAN D 8 1555 1555 1.44 LINK O6 MAN D 4 C1 MAN D 5 1555 1555 1.45 LINK O3 MAN D 4 C1 MAN D 7 1555 1555 1.44 LINK O2 MAN D 5 C1 MAN D 6 1555 1555 1.44 LINK O2 MAN D 8 C1 MAN D 9 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.45 LINK O6 BMA E 3 C1 MAN E 4 1555 1555 1.44 LINK C1 GU4 F 1 O2 YYJ F 2 1555 1555 1.39 LINK C1 GU4 G 1 O2 YYJ G 2 1555 1555 1.39 CISPEP 1 CYS A 47 CYS A 48 0 -0.69 CISPEP 2 GLU A 400 PRO A 401 0 -0.43 CRYST1 181.489 181.489 168.379 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005510 0.003181 0.000000 0.00000 SCALE2 0.000000 0.006362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005939 0.00000