HEADER SIGNALING PROTEIN 16-JAN-24 8RPP TITLE CRYSTAL STRUCTURE OF THE JIP1-JIP2-SH3 HETERODIMER AND THE JIP2-JIP2- TITLE 2 SH3 HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: JIP-2,JNK-INTERACTING PROTEIN 2,ISLET-BRAIN-2,IB-2,JNK MAP COMPND 5 KINASE SCAFFOLD PROTEIN 2,MITOGEN-ACTIVATED PROTEIN KINASE 8- COMPND 6 INTERACTING PROTEIN 2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: GRR IS PART OF THE PURIFICATION TAG; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: C-JUN-AMINO-TERMINAL KINASE-INTERACTING PROTEIN 1; COMPND 11 CHAIN: D; COMPND 12 SYNONYM: JIP-1,JNK-INTERACTING PROTEIN 1,ISLET-BRAIN 1,IB-1,JNK MAP COMPND 13 KINASE SCAFFOLD PROTEIN 1,MITOGEN-ACTIVATED PROTEIN KINASE 8- COMPND 14 INTERACTING PROTEIN 1; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: GHM IS PART OF THE PURIFICATION TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAPK8IP2, IB2, JIP2, PRKM8IPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: MAPK8IP1, IB1, JIP1, PRKM8IP; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS REGULATION OF JNK CASCADE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.PALENCIA,L.MARINO-PEREZ,F.I.IELASI,M.R.JENSEN REVDAT 2 31-JUL-24 8RPP 1 JRNL REVDAT 1 10-JUL-24 8RPP 0 JRNL AUTH L.MARINO PEREZ,F.S.IELASI,A.LEE,E.DELAFORGE,P.JUYOUX, JRNL AUTH 2 M.TENGO,R.J.DAVIS,A.PALENCIA,M.R.JENSEN JRNL TITL STRUCTURAL BASIS OF HOMODIMERIZATION OF THE JNK SCAFFOLD JRNL TITL 2 PROTEIN JIP2 AND ITS HETERODIMERIZATION WITH JIP1. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 39013462 JRNL DOI 10.1016/J.STR.2024.06.010 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.999 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2038 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.25500 REMARK 3 B22 (A**2) : 0.25500 REMARK 3 B33 (A**2) : -0.82800 REMARK 3 B12 (A**2) : 0.12800 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.733 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2141 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1819 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2915 ; 1.538 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4226 ; 0.525 ; 1.553 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 7.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 27 ;13.022 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 312 ;13.729 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2575 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 367 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 76 ; 0.164 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1020 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 149 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 984 ; 2.096 ; 2.382 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 984 ; 2.096 ; 2.382 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1228 ; 3.071 ; 3.549 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1229 ; 3.070 ; 3.552 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1157 ; 3.478 ; 2.763 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1158 ; 3.476 ; 2.764 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1684 ; 5.392 ; 4.006 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1685 ; 5.390 ; 4.007 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8RPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96546 REMARK 200 MONOCHROMATOR : SILICON CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS 1.1.7 REMARK 200 DATA SCALING SOFTWARE : STARANISO 2.3.73 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.867 REMARK 200 RESOLUTION RANGE LOW (A) : 59.086 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MALONATE 1.5 M, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.23500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.76559 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.08633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 34.23500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 19.76559 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.08633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 34.23500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 19.76559 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.08633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.53117 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 118.17267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.53117 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 118.17267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.53117 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 118.17267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 745 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 756 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 757 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 637 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 603 REMARK 465 ARG A 604 REMARK 465 ARG A 605 REMARK 465 GLY C 665 REMARK 465 GLY D 487 REMARK 465 HIS D 488 REMARK 465 MET D 489 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 628 -2.49 81.98 REMARK 500 ASP A 628 -2.49 87.05 REMARK 500 GLU A 637 -117.68 -97.95 REMARK 500 ASP A 638 150.46 -47.90 REMARK 500 ASP B 628 7.61 80.52 REMARK 500 GLU B 637 -110.09 -100.90 REMARK 500 ASP D 512 1.74 81.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 618 0.09 SIDE CHAIN REMARK 500 ARG A 643 0.08 SIDE CHAIN REMARK 500 ARG A 652 0.11 SIDE CHAIN REMARK 500 ARG C 604 0.08 SIDE CHAIN REMARK 500 ARG C 610 0.12 SIDE CHAIN REMARK 500 ARG C 618 0.08 SIDE CHAIN REMARK 500 ARG C 648 0.08 SIDE CHAIN REMARK 500 ARG D 494 0.15 SIDE CHAIN REMARK 500 ARG D 536 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 758 DISTANCE = 5.99 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NYK RELATED DB: PDB REMARK 900 HOMODIMER OF JIP1SH3-JIP1SH3 DBREF 8RPP A 605 665 UNP Q13387 JIP2_HUMAN 605 665 DBREF 8RPP B 605 665 UNP Q13387 JIP2_HUMAN 605 665 DBREF 8RPP C 605 665 UNP Q13387 JIP2_HUMAN 605 665 DBREF 8RPP D 490 547 UNP Q9UQF2 JIP1_HUMAN 490 547 SEQADV 8RPP GLY A 603 UNP Q13387 EXPRESSION TAG SEQADV 8RPP ARG A 604 UNP Q13387 EXPRESSION TAG SEQADV 8RPP GLY B 603 UNP Q13387 EXPRESSION TAG SEQADV 8RPP ARG B 604 UNP Q13387 EXPRESSION TAG SEQADV 8RPP GLY C 603 UNP Q13387 EXPRESSION TAG SEQADV 8RPP ARG C 604 UNP Q13387 EXPRESSION TAG SEQADV 8RPP GLY D 487 UNP Q9UQF2 EXPRESSION TAG SEQADV 8RPP HIS D 488 UNP Q9UQF2 EXPRESSION TAG SEQADV 8RPP MET D 489 UNP Q9UQF2 EXPRESSION TAG SEQRES 1 A 63 GLY ARG ARG GLU GLN THR HIS ARG ALA VAL PHE ARG PHE SEQRES 2 A 63 ILE PRO ARG HIS PRO ASP GLU LEU GLU LEU ASP VAL ASP SEQRES 3 A 63 ASP PRO VAL LEU VAL GLU ALA GLU GLU ASP ASP PHE TRP SEQRES 4 A 63 PHE ARG GLY PHE ASN MET ARG THR GLY GLU ARG GLY VAL SEQRES 5 A 63 PHE PRO ALA PHE TYR ALA HIS ALA VAL PRO GLY SEQRES 1 B 63 GLY ARG ARG GLU GLN THR HIS ARG ALA VAL PHE ARG PHE SEQRES 2 B 63 ILE PRO ARG HIS PRO ASP GLU LEU GLU LEU ASP VAL ASP SEQRES 3 B 63 ASP PRO VAL LEU VAL GLU ALA GLU GLU ASP ASP PHE TRP SEQRES 4 B 63 PHE ARG GLY PHE ASN MET ARG THR GLY GLU ARG GLY VAL SEQRES 5 B 63 PHE PRO ALA PHE TYR ALA HIS ALA VAL PRO GLY SEQRES 1 C 63 GLY ARG ARG GLU GLN THR HIS ARG ALA VAL PHE ARG PHE SEQRES 2 C 63 ILE PRO ARG HIS PRO ASP GLU LEU GLU LEU ASP VAL ASP SEQRES 3 C 63 ASP PRO VAL LEU VAL GLU ALA GLU GLU ASP ASP PHE TRP SEQRES 4 C 63 PHE ARG GLY PHE ASN MET ARG THR GLY GLU ARG GLY VAL SEQRES 5 C 63 PHE PRO ALA PHE TYR ALA HIS ALA VAL PRO GLY SEQRES 1 D 61 GLY HIS MET GLU GLN THR HIS ARG ALA ILE PHE ARG PHE SEQRES 2 D 61 VAL PRO ARG HIS GLU ASP GLU LEU GLU LEU GLU VAL ASP SEQRES 3 D 61 ASP PRO LEU LEU VAL GLU LEU GLN ALA GLU ASP TYR TRP SEQRES 4 D 61 TYR GLU ALA TYR ASN MET ARG THR GLY ALA ARG GLY VAL SEQRES 5 D 61 PHE PRO ALA TYR TYR ALA ILE GLU VAL FORMUL 5 HOH *182(H2 O) SHEET 1 AA1 5 GLU A 651 PRO A 656 0 SHEET 2 AA1 5 TRP A 641 ASN A 646 -1 N PHE A 642 O PHE A 655 SHEET 3 AA1 5 PRO A 630 GLU A 636 -1 N GLU A 634 O ARG A 643 SHEET 4 AA1 5 HIS A 609 ALA A 611 -1 N HIS A 609 O VAL A 631 SHEET 5 AA1 5 ALA A 660 ALA A 662 -1 O HIS A 661 N ARG A 610 SHEET 1 AA2 5 ARG B 652 PRO B 656 0 SHEET 2 AA2 5 TRP B 641 ASN B 646 -1 N GLY B 644 O GLY B 653 SHEET 3 AA2 5 PRO B 630 GLU B 636 -1 N ALA B 635 O ARG B 643 SHEET 4 AA2 5 HIS B 609 ALA B 611 -1 N HIS B 609 O VAL B 631 SHEET 5 AA2 5 ALA B 660 ALA B 662 -1 O HIS B 661 N ARG B 610 SHEET 1 AA3 5 ARG C 652 PRO C 656 0 SHEET 2 AA3 5 TRP C 641 ASN C 646 -1 N PHE C 642 O PHE C 655 SHEET 3 AA3 5 PRO C 630 GLU C 636 -1 N LEU C 632 O PHE C 645 SHEET 4 AA3 5 HIS C 609 ALA C 611 -1 N HIS C 609 O VAL C 631 SHEET 5 AA3 5 ALA C 660 ALA C 662 -1 O HIS C 661 N ARG C 610 SHEET 1 AA4 5 ARG D 536 PRO D 540 0 SHEET 2 AA4 5 TRP D 525 ASN D 530 -1 N TYR D 526 O PHE D 539 SHEET 3 AA4 5 PRO D 514 GLN D 520 -1 N LEU D 519 O GLU D 527 SHEET 4 AA4 5 HIS D 493 ALA D 495 -1 N HIS D 493 O LEU D 515 SHEET 5 AA4 5 ALA D 544 GLU D 546 -1 O ILE D 545 N ARG D 494 CRYST1 68.470 68.470 177.259 90.00 90.00 120.00 H 3 27 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014605 0.008432 0.000000 0.00000 SCALE2 0.000000 0.016864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005641 0.00000