HEADER HYDROLASE 17-JAN-24 8RPS TITLE CRYSTAL STRUCTURE OF HUMAN DNPH1 MUTANT- D80N BOUND TO 5HMDUMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1; COMPND 3 CHAIN: C, A, B; COMPND 4 SYNONYM: C-MYC-RESPONSIVE PROTEIN RCL; COMPND 5 EC: 3.2.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNPH1, C6ORF108, RCL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEOXYRIBONUCLEOSIDE 5'-MONOPHOSPHATE N-GLYCOSIDASE ACTIVITY, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DEVI,R.G.DA SILVA REVDAT 1 20-NOV-24 8RPS 0 JRNL AUTH A.E.CARBERRY,S.DEVI,D.J.HARRISON,R.G.DA SILVA JRNL TITL HUMAN 2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1: THE JRNL TITL 2 CATALYTIC ROLES OF TYR24 AND ASP80. JRNL REF CHEMBIOCHEM V. 25 00047 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 38350003 JRNL DOI 10.1002/CBIC.202400047 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4600 - 4.1100 1.00 2735 134 0.1630 0.1752 REMARK 3 2 4.1100 - 3.2600 1.00 2671 140 0.1558 0.1761 REMARK 3 3 3.2600 - 2.8500 1.00 2653 139 0.1724 0.1787 REMARK 3 4 2.8500 - 2.5900 1.00 2621 146 0.1770 0.2245 REMARK 3 5 2.5900 - 2.4000 1.00 2629 174 0.1749 0.1920 REMARK 3 6 2.4000 - 2.2600 1.00 2622 129 0.1793 0.2030 REMARK 3 7 2.2600 - 2.1500 0.99 2612 150 0.2066 0.2523 REMARK 3 8 2.1500 - 2.0600 1.00 2640 124 0.1909 0.2280 REMARK 3 9 2.0600 - 1.9800 1.00 2660 116 0.2039 0.2320 REMARK 3 10 1.9800 - 1.9100 1.00 2638 139 0.2095 0.2296 REMARK 3 11 1.9100 - 1.8500 0.99 2607 138 0.2607 0.3416 REMARK 3 12 1.8500 - 1.8000 1.00 2620 148 0.2209 0.2711 REMARK 3 13 1.8000 - 1.7500 0.99 2565 138 0.2432 0.2928 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 NULL REMARK 3 ANGLE : 0.971 NULL REMARK 3 CHIRALITY : 0.054 460 REMARK 3 PLANARITY : 0.018 565 REMARK 3 DIHEDRAL : 6.542 460 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.6199 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36132 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 44.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: [25 MM SODIUM MALONATE, 37.5 MM REMARK 280 IMIDAZOLE AND 37.5 MM BORIC ACID] PH 4.0 AND 15 % PEG 1500., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.43950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.41400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.43950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.41400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -25.07347 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 84.91869 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 18 REMARK 465 ALA C 59 REMARK 465 ALA C 60 REMARK 465 GLU C 61 REMARK 465 LEU C 62 REMARK 465 GLY C 63 REMARK 465 ALA C 64 REMARK 465 ARG C 65 REMARK 465 GLY C 66 REMARK 465 GLU C 67 REMARK 465 GLU C 68 REMARK 465 ALA C 69 REMARK 465 ALA C 70 REMARK 465 ALA C 160 REMARK 465 ASP C 161 REMARK 465 PRO C 162 REMARK 465 VAL A 57 REMARK 465 ALA A 58 REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 GLU A 61 REMARK 465 LEU A 62 REMARK 465 GLY A 63 REMARK 465 ALA A 64 REMARK 465 ARG A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 465 GLU A 68 REMARK 465 ALA A 69 REMARK 465 ALA A 160 REMARK 465 ASP A 161 REMARK 465 PRO A 162 REMARK 465 ALA B 58 REMARK 465 ALA B 59 REMARK 465 ALA B 60 REMARK 465 GLU B 61 REMARK 465 LEU B 62 REMARK 465 GLY B 63 REMARK 465 ALA B 64 REMARK 465 ARG B 65 REMARK 465 GLY B 66 REMARK 465 GLU B 67 REMARK 465 GLU B 68 REMARK 465 ALA B 69 REMARK 465 ALA B 70 REMARK 465 GLY B 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 36 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 57 CG1 CG2 REMARK 470 MET A 19 CG SD CE REMARK 470 ARG A 36 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 HIS A 56 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 57 CG1 CG2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 ASP B 161 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 29 -75.04 -134.38 REMARK 500 SER C 128 132.70 -36.62 REMARK 500 SER C 138 -80.43 -131.80 REMARK 500 ILE A 29 -72.42 -121.39 REMARK 500 SER A 138 -75.77 -128.74 REMARK 500 ARG B 30 -164.19 -165.33 REMARK 500 SER B 128 129.40 -35.71 REMARK 500 SER B 138 -80.92 -129.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RPS C 20 162 UNP O43598 DNPH1_HUMAN 20 162 DBREF 8RPS A 20 162 UNP O43598 DNPH1_HUMAN 20 162 DBREF 8RPS B 20 162 UNP O43598 DNPH1_HUMAN 20 162 SEQADV 8RPS GLY C 18 UNP O43598 EXPRESSION TAG SEQADV 8RPS MET C 19 UNP O43598 EXPRESSION TAG SEQADV 8RPS ASN C 80 UNP O43598 ASP 80 ENGINEERED MUTATION SEQADV 8RPS GLY A 18 UNP O43598 EXPRESSION TAG SEQADV 8RPS MET A 19 UNP O43598 EXPRESSION TAG SEQADV 8RPS ASN A 80 UNP O43598 ASP 80 ENGINEERED MUTATION SEQADV 8RPS GLY B 18 UNP O43598 EXPRESSION TAG SEQADV 8RPS MET B 19 UNP O43598 EXPRESSION TAG SEQADV 8RPS ASN B 80 UNP O43598 ASP 80 ENGINEERED MUTATION SEQRES 1 C 145 GLY MET ARG PRO ALA LEU TYR PHE CYS GLY SER ILE ARG SEQRES 2 C 145 GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG ILE VAL SEQRES 3 C 145 SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR GLU HIS SEQRES 4 C 145 VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU GLU ALA SEQRES 5 C 145 ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASN LEU GLU SEQRES 6 C 145 TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU VAL THR SEQRES 7 C 145 GLN PRO SER LEU GLY VAL GLY TYR GLU LEU GLY ARG ALA SEQRES 8 C 145 VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE ARG PRO SEQRES 9 C 145 GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG GLY ALA SEQRES 10 C 145 ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR GLU GLU SEQRES 11 C 145 GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE GLU ALA SEQRES 12 C 145 ASP PRO SEQRES 1 A 145 GLY MET ARG PRO ALA LEU TYR PHE CYS GLY SER ILE ARG SEQRES 2 A 145 GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG ILE VAL SEQRES 3 A 145 SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR GLU HIS SEQRES 4 A 145 VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU GLU ALA SEQRES 5 A 145 ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASN LEU GLU SEQRES 6 A 145 TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU VAL THR SEQRES 7 A 145 GLN PRO SER LEU GLY VAL GLY TYR GLU LEU GLY ARG ALA SEQRES 8 A 145 VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE ARG PRO SEQRES 9 A 145 GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG GLY ALA SEQRES 10 A 145 ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR GLU GLU SEQRES 11 A 145 GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE GLU ALA SEQRES 12 A 145 ASP PRO SEQRES 1 B 145 GLY MET ARG PRO ALA LEU TYR PHE CYS GLY SER ILE ARG SEQRES 2 B 145 GLY GLY ARG GLU ASP ARG THR LEU TYR GLU ARG ILE VAL SEQRES 3 B 145 SER ARG LEU ARG ARG PHE GLY THR VAL LEU THR GLU HIS SEQRES 4 B 145 VAL ALA ALA ALA GLU LEU GLY ALA ARG GLY GLU GLU ALA SEQRES 5 B 145 ALA GLY GLY ASP ARG LEU ILE HIS GLU GLN ASN LEU GLU SEQRES 6 B 145 TRP LEU GLN GLN ALA ASP VAL VAL VAL ALA GLU VAL THR SEQRES 7 B 145 GLN PRO SER LEU GLY VAL GLY TYR GLU LEU GLY ARG ALA SEQRES 8 B 145 VAL ALA PHE ASN LYS ARG ILE LEU CYS LEU PHE ARG PRO SEQRES 9 B 145 GLN SER GLY ARG VAL LEU SER ALA MET ILE ARG GLY ALA SEQRES 10 B 145 ALA ASP GLY SER ARG PHE GLN VAL TRP ASP TYR GLU GLU SEQRES 11 B 145 GLY GLU VAL GLU ALA LEU LEU ASP ARG TYR PHE GLU ALA SEQRES 12 B 145 ASP PRO HET 5HU C 201 22 HET 5HU A 201 22 HETNAM 5HU 5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE FORMUL 4 5HU 2(C10 H15 N2 O9 P) FORMUL 6 HOH *198(H2 O) HELIX 1 AA1 ASP C 35 ARG C 47 1 13 HELIX 2 AA2 GLY C 72 ALA C 87 1 16 HELIX 3 AA3 SER C 98 PHE C 111 1 14 HELIX 4 AA4 SER C 128 GLY C 133 1 6 HELIX 5 AA5 GLU C 146 GLY C 148 5 3 HELIX 6 AA6 GLU C 149 GLU C 159 1 11 HELIX 7 AA7 ASP A 35 ARG A 47 1 13 HELIX 8 AA8 GLY A 71 ALA A 87 1 17 HELIX 9 AA9 SER A 98 PHE A 111 1 14 HELIX 10 AB1 ARG A 120 GLY A 124 5 5 HELIX 11 AB2 SER A 128 GLY A 133 1 6 HELIX 12 AB3 GLU A 146 GLY A 148 5 3 HELIX 13 AB4 GLU A 149 PHE A 158 1 10 HELIX 14 AB5 GLY B 32 GLY B 50 1 19 HELIX 15 AB6 ASP B 73 ALA B 87 1 15 HELIX 16 AB7 SER B 98 PHE B 111 1 14 HELIX 17 AB8 ARG B 120 GLY B 124 5 5 HELIX 18 AB9 SER B 128 GLY B 133 1 6 HELIX 19 AC1 GLU B 146 GLY B 148 5 3 HELIX 20 AC2 GLU B 149 ASP B 161 1 13 SHEET 1 AA1 5 THR C 51 THR C 54 0 SHEET 2 AA1 5 ALA C 22 CYS C 26 1 N LEU C 23 O THR C 51 SHEET 3 AA1 5 VAL C 89 GLU C 93 1 O VAL C 91 N TYR C 24 SHEET 4 AA1 5 ILE C 115 PHE C 119 1 O LEU C 116 N VAL C 90 SHEET 5 AA1 5 PHE C 140 ASP C 144 1 O GLN C 141 N CYS C 117 SHEET 1 AA2 5 THR A 51 VAL A 52 0 SHEET 2 AA2 5 ALA A 22 CYS A 26 1 N LEU A 23 O THR A 51 SHEET 3 AA2 5 VAL A 89 GLU A 93 1 O VAL A 91 N TYR A 24 SHEET 4 AA2 5 ARG A 114 PHE A 119 1 O LEU A 116 N VAL A 90 SHEET 5 AA2 5 PHE A 140 ASP A 144 1 O GLN A 141 N CYS A 117 SHEET 1 AA3 5 THR B 51 THR B 54 0 SHEET 2 AA3 5 ALA B 22 CYS B 26 1 N LEU B 23 O LEU B 53 SHEET 3 AA3 5 VAL B 89 GLU B 93 1 O VAL B 91 N CYS B 26 SHEET 4 AA3 5 ARG B 114 PHE B 119 1 O ARG B 114 N VAL B 90 SHEET 5 AA3 5 PHE B 140 ASP B 144 1 O GLN B 141 N CYS B 117 CRYST1 74.879 56.828 88.543 90.00 106.45 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013355 0.000000 0.003943 0.00000 SCALE2 0.000000 0.017597 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011776 0.00000