HEADER HYDROLASE 24-JAN-24 8RSL TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS MACRODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-ADP-RIBOSE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: YMDB, G6X24_05250, G6Y24_06505, GO793_03185, GO829_13425, SOURCE 5 GO941_07705, M1K003_0429, SAMEA70153168_00686; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADP-RIBOSYLATION, ADP-RIBOSE, ADP-RIBOSYLHYDROLASE, LIPOYLATION, KEYWDS 2 METALLOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 2 02-OCT-24 8RSL 1 JRNL REVDAT 1 25-SEP-24 8RSL 0 JRNL AUTH A.ARIZA,Q.LIU,N.COWIESON,I.AHEL,D.V.FILIPPOV,J.G.M.RACK JRNL TITL EVOLUTIONARY AND MOLECULAR BASIS OF ADP-RIBOSYLATION JRNL TITL 2 REVERSAL BY ZINC-DEPENDENT MACRODOMAINS. JRNL REF J.BIOL.CHEM. 07770 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39270823 JRNL DOI 10.1016/J.JBC.2024.107770 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 38974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.903 REMARK 3 FREE R VALUE TEST SET COUNT : 1911 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 346 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80600 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : 0.66800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.223 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4467 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4314 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6070 ; 1.699 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9937 ; 0.596 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 6.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 30 ; 9.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;16.923 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 697 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5318 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1017 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 857 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 110 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2174 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.175 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2206 ; 3.359 ; 2.447 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2206 ; 3.349 ; 2.447 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2764 ; 4.808 ; 4.375 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2765 ; 4.808 ; 4.376 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2261 ; 4.461 ; 3.003 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2260 ; 4.462 ; 3.002 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3286 ; 6.802 ; 5.200 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3287 ; 6.801 ; 5.201 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A -6 A 264 NULL REMARK 3 1 A -6 A 264 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -6 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 58.8334 6.6709 21.4767 REMARK 3 T TENSOR REMARK 3 T11: 0.0400 T22: 0.0449 REMARK 3 T33: 0.0026 T12: -0.0270 REMARK 3 T13: -0.0052 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 0.8587 L22: 1.4857 REMARK 3 L33: 0.7678 L12: -0.4173 REMARK 3 L13: -0.1378 L23: -0.1922 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: 0.0320 S13: 0.0357 REMARK 3 S21: -0.1645 S22: 0.0368 S23: 0.0188 REMARK 3 S31: -0.0521 S32: 0.0286 S33: -0.0192 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 41.9421 -25.7897 3.9347 REMARK 3 T TENSOR REMARK 3 T11: 0.0410 T22: 0.0557 REMARK 3 T33: 0.0119 T12: 0.0280 REMARK 3 T13: -0.0016 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4742 L22: 1.8320 REMARK 3 L33: 0.8213 L12: 0.4892 REMARK 3 L13: -0.0821 L23: -0.3820 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.0380 S13: -0.0427 REMARK 3 S21: 0.1665 S22: 0.0721 S23: -0.0394 REMARK 3 S31: 0.0505 S32: 0.0779 S33: -0.0557 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8RSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292136076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39007 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 49.084 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18.5% (V/V) PEG400, 12.5% (V/V) 1 REMARK 280 -PROPANOL, 4% (V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 69.70000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 SER B -20 REMARK 465 SER B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 SER B -11 REMARK 465 GLY B -10 REMARK 465 LEU B -9 REMARK 465 VAL B -8 REMARK 465 PRO B -7 REMARK 465 ALA B 265 REMARK 465 GLU B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -6 CG CD NE CZ NH1 NH2 REMARK 470 ARG B -6 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 128 O HOH B 401 2.11 REMARK 500 OD1 ASP B 24 O HOH B 402 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLN B 220 CB - CA - C ANGL. DEV. = 14.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 119 20.10 -79.90 REMARK 500 ASP A 119 45.74 -99.59 REMARK 500 TYR A 159 -113.67 51.74 REMARK 500 PHE B 110 4.70 81.38 REMARK 500 ASP B 119 56.93 -96.39 REMARK 500 TYR B 159 -114.03 51.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 42 0.12 SIDE CHAIN REMARK 500 ARG B 42 0.11 SIDE CHAIN REMARK 500 ARG B 229 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -3 ND1 REMARK 620 2 CYS A 113 SG 25.8 REMARK 620 3 HIS A 118 ND1 23.3 5.4 REMARK 620 4 CYS A 120 SG 20.6 5.1 5.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B -3 ND1 REMARK 620 2 CYS B 113 SG 27.7 REMARK 620 3 HIS B 118 ND1 24.9 5.4 REMARK 620 4 CYS B 120 SG 22.5 5.2 5.0 REMARK 620 N 1 2 3 DBREF1 8RSL A 1 266 UNP A0A390ZNG0_STAAU DBREF2 8RSL A A0A390ZNG0 1 266 DBREF1 8RSL B 1 266 UNP A0A390ZNG0_STAAU DBREF2 8RSL B A0A390ZNG0 1 266 SEQADV 8RSL MET A -22 UNP A0A390ZNG INITIATING METHIONINE SEQADV 8RSL GLY A -21 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER A -20 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER A -19 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS A -18 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS A -17 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS A -16 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS A -15 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS A -14 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS A -13 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER A -12 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER A -11 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL GLY A -10 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL LEU A -9 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL VAL A -8 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL PRO A -7 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL ARG A -6 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL GLY A -5 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER A -4 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS A -3 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL MET A -2 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL ALA A -1 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER A 0 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL MET B -22 UNP A0A390ZNG INITIATING METHIONINE SEQADV 8RSL GLY B -21 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER B -20 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER B -19 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS B -18 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS B -17 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS B -16 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS B -15 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS B -14 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS B -13 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER B -12 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER B -11 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL GLY B -10 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL LEU B -9 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL VAL B -8 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL PRO B -7 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL ARG B -6 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL GLY B -5 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER B -4 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL HIS B -3 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL MET B -2 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL ALA B -1 UNP A0A390ZNG EXPRESSION TAG SEQADV 8RSL SER B 0 UNP A0A390ZNG EXPRESSION TAG SEQRES 1 A 289 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 289 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET GLU THR SEQRES 3 A 289 LEU LYS SER ASN LYS ALA ARG LEU GLU TYR LEU ILE ASN SEQRES 4 A 289 ASP MET ARG ARG GLU ARG ASN ASP ASN ASP VAL LEU VAL SEQRES 5 A 289 MET PRO SER SER PHE GLU ASP LEU TRP GLU LEU TYR ARG SEQRES 6 A 289 GLY LEU ALA ASN VAL ARG PRO ALA LEU PRO VAL SER ASP SEQRES 7 A 289 GLU TYR LEU ALA VAL GLN ASP ALA MET LEU SER ASP LEU SEQRES 8 A 289 ASN HIS GLN HIS VAL THR ASP LEU LYS ASP LEU LYS PRO SEQRES 9 A 289 ILE LYS GLY ASP ASN ILE PHE VAL TRP GLN GLY ASP ILE SEQRES 10 A 289 THR THR LEU LYS ILE ASP ALA ILE VAL ASN ALA ALA ASN SEQRES 11 A 289 SER ARG PHE LEU GLY CYS MET GLN ALA ASN HIS ASP CYS SEQRES 12 A 289 ILE ASP ASN ILE ILE HIS THR LYS ALA GLY VAL GLN VAL SEQRES 13 A 289 ARG LEU ASP CYS ALA GLU ILE ILE ARG GLN GLN GLY ARG SEQRES 14 A 289 ASN GLU GLY VAL GLY LYS ALA LYS LYS THR ARG GLY TYR SEQRES 15 A 289 ASN LEU PRO ALA LYS TYR ILE ILE HIS THR VAL GLY PRO SEQRES 16 A 289 GLN ILE ARG ARG LEU PRO VAL SER LYS MET ASN GLN ASP SEQRES 17 A 289 LEU LEU ALA LYS CYS TYR LEU SER CYS LEU LYS LEU ALA SEQRES 18 A 289 ASP GLN HIS SER LEU ASN HIS VAL ALA PHE CYS CYS ILE SEQRES 19 A 289 SER THR GLY VAL PHE ALA PHE PRO GLN ASP GLU ALA ALA SEQRES 20 A 289 GLU ILE ALA VAL ARG THR VAL GLU SER TYR LEU LYS GLU SEQRES 21 A 289 THR ASN SER THR LEU LYS VAL VAL PHE ASN VAL PHE THR SEQRES 22 A 289 ASP LYS ASP LEU GLN LEU TYR LYS GLU ALA LEU ASN ARG SEQRES 23 A 289 ASP ALA GLU SEQRES 1 B 289 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 289 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET GLU THR SEQRES 3 B 289 LEU LYS SER ASN LYS ALA ARG LEU GLU TYR LEU ILE ASN SEQRES 4 B 289 ASP MET ARG ARG GLU ARG ASN ASP ASN ASP VAL LEU VAL SEQRES 5 B 289 MET PRO SER SER PHE GLU ASP LEU TRP GLU LEU TYR ARG SEQRES 6 B 289 GLY LEU ALA ASN VAL ARG PRO ALA LEU PRO VAL SER ASP SEQRES 7 B 289 GLU TYR LEU ALA VAL GLN ASP ALA MET LEU SER ASP LEU SEQRES 8 B 289 ASN HIS GLN HIS VAL THR ASP LEU LYS ASP LEU LYS PRO SEQRES 9 B 289 ILE LYS GLY ASP ASN ILE PHE VAL TRP GLN GLY ASP ILE SEQRES 10 B 289 THR THR LEU LYS ILE ASP ALA ILE VAL ASN ALA ALA ASN SEQRES 11 B 289 SER ARG PHE LEU GLY CYS MET GLN ALA ASN HIS ASP CYS SEQRES 12 B 289 ILE ASP ASN ILE ILE HIS THR LYS ALA GLY VAL GLN VAL SEQRES 13 B 289 ARG LEU ASP CYS ALA GLU ILE ILE ARG GLN GLN GLY ARG SEQRES 14 B 289 ASN GLU GLY VAL GLY LYS ALA LYS LYS THR ARG GLY TYR SEQRES 15 B 289 ASN LEU PRO ALA LYS TYR ILE ILE HIS THR VAL GLY PRO SEQRES 16 B 289 GLN ILE ARG ARG LEU PRO VAL SER LYS MET ASN GLN ASP SEQRES 17 B 289 LEU LEU ALA LYS CYS TYR LEU SER CYS LEU LYS LEU ALA SEQRES 18 B 289 ASP GLN HIS SER LEU ASN HIS VAL ALA PHE CYS CYS ILE SEQRES 19 B 289 SER THR GLY VAL PHE ALA PHE PRO GLN ASP GLU ALA ALA SEQRES 20 B 289 GLU ILE ALA VAL ARG THR VAL GLU SER TYR LEU LYS GLU SEQRES 21 B 289 THR ASN SER THR LEU LYS VAL VAL PHE ASN VAL PHE THR SEQRES 22 B 289 ASP LYS ASP LEU GLN LEU TYR LYS GLU ALA LEU ASN ARG SEQRES 23 B 289 ASP ALA GLU HET ZN A 301 1 HET ZN B 301 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *346(H2 O) HELIX 1 AA1 SER A 0 ARG A 22 1 23 HELIX 2 AA2 SER A 33 ARG A 48 1 16 HELIX 3 AA3 SER A 54 HIS A 70 1 17 HELIX 4 AA4 LYS A 77 LEU A 79 5 3 HELIX 5 AA5 ASP A 93 THR A 95 5 3 HELIX 6 AA6 CYS A 120 GLY A 130 1 11 HELIX 7 AA7 GLY A 130 GLY A 145 1 16 HELIX 8 AA8 SER A 180 HIS A 201 1 22 HELIX 9 AA9 PRO A 219 ASN A 239 1 21 HELIX 10 AB1 THR A 250 ARG A 263 1 14 HELIX 11 AB2 SER B 0 ARG B 22 1 23 HELIX 12 AB3 SER B 33 ARG B 48 1 16 HELIX 13 AB4 SER B 54 HIS B 70 1 17 HELIX 14 AB5 LYS B 77 LEU B 79 5 3 HELIX 15 AB6 ASP B 93 THR B 95 5 3 HELIX 16 AB7 CYS B 120 GLY B 130 1 11 HELIX 17 AB8 GLY B 130 GLY B 145 1 16 HELIX 18 AB9 SER B 180 HIS B 201 1 22 HELIX 19 AC1 PRO B 219 ASN B 239 1 21 HELIX 20 AC2 THR B 250 ASP B 264 1 15 SHEET 1 AA1 2 THR A 74 ASP A 75 0 SHEET 2 AA1 2 LEU A 97 LYS A 98 1 O LYS A 98 N THR A 74 SHEET 1 AA2 6 ILE A 87 GLN A 91 0 SHEET 2 AA2 6 LYS A 243 VAL A 248 1 O PHE A 246 N PHE A 88 SHEET 3 AA2 6 HIS A 205 PHE A 208 1 N PHE A 208 O ASN A 247 SHEET 4 AA2 6 ALA A 101 ALA A 105 1 N VAL A 103 O ALA A 207 SHEET 5 AA2 6 TYR A 165 THR A 169 1 O ILE A 167 N ASN A 104 SHEET 6 AA2 6 LYS A 154 ARG A 157 -1 N LYS A 154 O HIS A 168 SHEET 1 AA3 2 THR B 74 ASP B 75 0 SHEET 2 AA3 2 LEU B 97 LYS B 98 1 O LYS B 98 N THR B 74 SHEET 1 AA4 6 ILE B 87 GLN B 91 0 SHEET 2 AA4 6 LYS B 243 VAL B 248 1 O PHE B 246 N PHE B 88 SHEET 3 AA4 6 HIS B 205 PHE B 208 1 N PHE B 208 O ASN B 247 SHEET 4 AA4 6 ALA B 101 ALA B 106 1 N VAL B 103 O ALA B 207 SHEET 5 AA4 6 TYR B 165 VAL B 170 1 O ILE B 167 N ASN B 104 SHEET 6 AA4 6 LYS B 154 ARG B 157 -1 N LYS B 154 O HIS B 168 LINK ND1 HIS A -3 ZN ZN A 301 1555 1655 2.05 LINK SG CYS A 113 ZN ZN A 301 1555 1555 2.32 LINK ND1 HIS A 118 ZN ZN A 301 1555 1555 2.13 LINK SG CYS A 120 ZN ZN A 301 1555 1555 2.28 LINK ND1 HIS B -3 ZN ZN B 301 1555 1655 2.08 LINK SG CYS B 113 ZN ZN B 301 1555 1555 2.29 LINK ND1 HIS B 118 ZN ZN B 301 1555 1555 2.16 LINK SG CYS B 120 ZN ZN B 301 1555 1555 2.22 CISPEP 1 LEU A 177 PRO A 178 0 -7.37 CISPEP 2 LEU B 177 PRO B 178 0 -6.49 CRYST1 40.190 139.400 49.190 90.00 93.76 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024882 0.000000 0.001635 0.00000 SCALE2 0.000000 0.007174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020373 0.00000