HEADER HYDROLASE 24-JAN-24 8RSM TITLE CRYSTAL STRUCTURE OF STREPTOCOCCUS PYOGENES MACRODOMAIN IN COMPLEX TITLE 2 WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-ADP-RIBOSE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPYMACROD; COMPND 5 EC: 3.2.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: SPY_1216, M5005_SPY0930; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADP-RIBOSYLATION, ADP-RIBOSE, ADP-RIBOSYLHYDROLASE, LIPOYLATION, KEYWDS 2 METALLOENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ARIZA REVDAT 2 02-OCT-24 8RSM 1 JRNL REVDAT 1 25-SEP-24 8RSM 0 JRNL AUTH A.ARIZA,Q.LIU,N.COWIESON,I.AHEL,D.V.FILIPPOV,J.G.M.RACK JRNL TITL EVOLUTIONARY AND MOLECULAR BASIS OF ADP-RIBOSYLATION JRNL TITL 2 REVERSAL BY ZINC-DEPENDENT MACRODOMAINS. JRNL REF J.BIOL.CHEM. 07770 2024 JRNL REFN ESSN 1083-351X JRNL PMID 39270823 JRNL DOI 10.1016/J.JBC.2024.107770 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.193 REMARK 3 FREE R VALUE TEST SET COUNT : 1005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1312 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90300 REMARK 3 B22 (A**2) : -0.90300 REMARK 3 B33 (A**2) : 1.80600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.818 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2087 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1971 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2835 ; 1.644 ; 1.664 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4539 ; 0.560 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.216 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ;15.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;16.988 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2401 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 475 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 433 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 34 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1025 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1016 ; 2.206 ; 2.110 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1016 ; 2.206 ; 2.110 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1267 ; 3.324 ; 3.764 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1268 ; 3.325 ; 3.768 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1071 ; 3.428 ; 2.561 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1072 ; 3.427 ; 2.560 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1567 ; 5.177 ; 4.494 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1568 ; 5.176 ; 4.494 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -28.5989 86.9473 -11.5770 REMARK 3 T TENSOR REMARK 3 T11: 0.0036 T22: 0.0093 REMARK 3 T33: 0.0033 T12: -0.0041 REMARK 3 T13: -0.0034 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.7334 L22: 0.5003 REMARK 3 L33: 0.9606 L12: -0.0222 REMARK 3 L13: -0.1577 L23: -0.2033 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.0052 S13: -0.0000 REMARK 3 S21: -0.0165 S22: 0.0043 S23: 0.0165 REMARK 3 S31: -0.0054 S32: 0.0132 S33: 0.0020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8RSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292136077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2822 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 68.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM COCADYLATE [PH 6.5], 27% REMARK 280 (W/V) PEG2000MME, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.94750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.47375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.42125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 20 REMARK 465 THR A 21 REMARK 465 SER A 22 REMARK 465 SER A 23 REMARK 465 TRP A 24 REMARK 465 ALA A 25 REMARK 465 CYS A 26 REMARK 465 PRO A 27 REMARK 465 LEU A 28 REMARK 465 PRO A 29 REMARK 465 ASN A 30 REMARK 465 ALA A 31 REMARK 465 ASN A 267 REMARK 465 ASN A 268 REMARK 465 CYS A 269 REMARK 465 GLU A 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 410 O HOH A 441 4274 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 50 159.83 -49.97 REMARK 500 TYR A 158 -122.42 51.99 REMARK 500 SER A 212 -5.01 79.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 67 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 112 SG REMARK 620 2 HIS A 117 ND1 105.2 REMARK 620 3 CYS A 119 SG 113.6 114.8 REMARK 620 4 AR6 A 302 O1D 112.6 115.3 95.5 REMARK 620 N 1 2 3 DBREF 8RSM A 1 270 UNP Q99ZI6 ADPRH_STRP1 1 270 SEQADV 8RSM GLY A -3 UNP Q99ZI6 EXPRESSION TAG SEQADV 8RSM PRO A -2 UNP Q99ZI6 EXPRESSION TAG SEQADV 8RSM MET A -1 UNP Q99ZI6 EXPRESSION TAG SEQADV 8RSM SER A 0 UNP Q99ZI6 EXPRESSION TAG SEQRES 1 A 274 GLY PRO MET SER MET PRO SER SER PHE ASP LEU LEU GLY SEQRES 2 A 274 GLU MET ILE GLY LEU LEU GLN THR GLU GLN LEU THR SER SEQRES 3 A 274 SER TRP ALA CYS PRO LEU PRO ASN ALA LEU THR LYS ARG SEQRES 4 A 274 GLN ASP LEU TRP ARG ALA LEU ILE ASN GLN ARG PRO ALA SEQRES 5 A 274 LEU PRO LEU SER LYS ASP TYR LEU ASN LEU GLU ASP ALA SEQRES 6 A 274 TYR LEU ASP ASP TRP ARG ALA SER PHE VAL PRO VAL SER SEQRES 7 A 274 VAL LYS ASP CYS GLN LYS THR ASN TYR THR SER LEU PHE SEQRES 8 A 274 LEU TYR HIS GLY ASP ILE ARG TYR LEU ALA VAL ASP ALA SEQRES 9 A 274 ILE VAL ASN ALA ALA ASN SER GLU LEU LEU GLY CYS PHE SEQRES 10 A 274 SER PRO ASN HIS GLY CYS ILE ASP ASN ALA ILE HIS THR SEQRES 11 A 274 PHE ALA GLY SER ARG LEU ARG LEU ALA CYS GLN ALA ILE SEQRES 12 A 274 MET THR GLU GLN GLY ARG LYS GLU ALA ILE GLY GLN ALA SEQRES 13 A 274 LYS LEU THR SER ALA TYR HIS LEU PRO ALA SER TYR ILE SEQRES 14 A 274 ILE HIS THR VAL GLY PRO ARG ILE THR LYS GLY HIS HIS SEQRES 15 A 274 VAL SER PRO ILE ARG ALA ASP LEU LEU ALA ARG CYS TYR SEQRES 16 A 274 ARG SER SER LEU ASP LEU ALA VAL LYS ALA GLY LEU THR SEQRES 17 A 274 SER LEU ALA PHE CYS SER ILE SER THR GLY GLU PHE GLY SEQRES 18 A 274 PHE PRO LYS LYS GLU ALA ALA GLN ILE ALA ILE LYS THR SEQRES 19 A 274 VAL LEU LYS TRP GLN ALA GLU HIS PRO GLU SER LYS THR SEQRES 20 A 274 LEU THR THR ILE PHE ASN THR PHE THR SER GLU ASP LYS SEQRES 21 A 274 ALA LEU TYR ASP THR TYR LEU GLN LYS GLU ASN ASN CYS SEQRES 22 A 274 GLU HET ZN A 301 1 HET AR6 A 302 36 HETNAM ZN ZINC ION HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 ZN ZN 2+ FORMUL 3 AR6 C15 H23 N5 O14 P2 FORMUL 4 HOH *127(H2 O) HELIX 1 AA1 SER A 3 GLU A 18 1 16 HELIX 2 AA2 LYS A 34 ARG A 46 1 13 HELIX 3 AA3 SER A 52 SER A 69 1 18 HELIX 4 AA4 LYS A 76 CYS A 78 5 3 HELIX 5 AA5 ASP A 92 ARG A 94 5 3 HELIX 6 AA6 CYS A 119 GLY A 129 1 11 HELIX 7 AA7 GLY A 129 GLY A 144 1 16 HELIX 8 AA8 SER A 180 ALA A 201 1 22 HELIX 9 AA9 PRO A 219 HIS A 238 1 20 HELIX 10 AB1 PRO A 239 LYS A 242 5 4 HELIX 11 AB2 THR A 252 GLN A 264 1 13 SHEET 1 AA1 2 VAL A 73 SER A 74 0 SHEET 2 AA1 2 LEU A 96 ALA A 97 1 O ALA A 97 N VAL A 73 SHEET 1 AA2 6 LEU A 86 HIS A 90 0 SHEET 2 AA2 6 THR A 245 THR A 250 1 O PHE A 248 N PHE A 87 SHEET 3 AA2 6 SER A 205 PHE A 208 1 N LEU A 206 O ILE A 247 SHEET 4 AA2 6 ALA A 100 ALA A 104 1 N VAL A 102 O ALA A 207 SHEET 5 AA2 6 TYR A 164 THR A 168 1 O ILE A 166 N ILE A 101 SHEET 6 AA2 6 LYS A 153 SER A 156 -1 N LYS A 153 O HIS A 167 LINK SG CYS A 112 ZN ZN A 301 1555 1555 2.30 LINK ND1 HIS A 117 ZN ZN A 301 1555 1555 2.09 LINK SG CYS A 119 ZN ZN A 301 1555 1555 2.17 LINK ZN ZN A 301 O1D AR6 A 302 1555 1555 2.11 CRYST1 41.704 41.704 137.895 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023979 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007252 0.00000