HEADER VIRAL PROTEIN 25-JAN-24 8RT0 TITLE BTV-15 VP5 PH 6.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BLUETONGUE VIRUS; SOURCE 3 ORGANISM_TAXID: 40051; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS BLUETONGUE 15 VP5 OUTER CAPSID PROTEIN PH 6.0, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.I.STUART,G.C.SUTTON REVDAT 1 04-SEP-24 8RT0 0 JRNL AUTH H.ZHANG,K.EL OMARI,G.SUTTON,D.I.STUART JRNL TITL THE EFFECT OF PH ON THE STRUCTURE OF BLUETONGUE VIRUS VP5. JRNL REF J.GEN.VIROL. V. 105 2024 JRNL REFN ESSN 1465-2099 JRNL PMID 39163113 JRNL DOI 10.1099/JGV.0.002018 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1256 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.52000 REMARK 3 B22 (A**2) : -1.52000 REMARK 3 B33 (A**2) : 4.92000 REMARK 3 B12 (A**2) : -0.76000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1875 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2523 ; 1.868 ; 1.835 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 5.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 6.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 328 ;16.322 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1427 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 893 ; 6.373 ; 6.407 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1111 ; 8.634 ;11.479 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 982 ; 8.860 ; 7.246 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7745 ;15.745 ;83.960 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 8RT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292135635. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96864 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18479 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 51.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM CHLORIDE, 0.1M TRIS, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.43500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.19046 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.37000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 38.43500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.19046 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.37000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 38.43500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.19046 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.37000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.38092 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 108.74000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.38092 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 108.74000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.38092 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 108.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 38.43500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 66.57137 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -38.43500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 66.57137 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 708 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 HIS A 43 REMARK 465 GLY A 44 REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 ILE A 48 REMARK 465 ASP A 49 REMARK 465 GLY A 50 REMARK 465 ILE A 51 REMARK 465 ILE A 52 REMARK 465 GLN A 53 REMARK 465 GLY A 54 REMARK 465 SER A 55 REMARK 465 VAL A 56 REMARK 465 HIS A 57 REMARK 465 SER A 58 REMARK 465 ALA A 59 REMARK 465 LEU A 60 REMARK 465 THR A 61 REMARK 465 GLY A 62 REMARK 465 GLU A 63 REMARK 465 SER A 64 REMARK 465 VAL A 140 REMARK 465 GLY A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 GLU A 144 REMARK 465 GLU A 145 REMARK 465 ASP A 146 REMARK 465 GLN A 147 REMARK 465 ILE A 148 REMARK 465 GLN A 149 REMARK 465 MET A 150 REMARK 465 LEU A 151 REMARK 465 GLU A 152 REMARK 465 LYS A 153 REMARK 465 ALA A 154 REMARK 465 LEU A 155 REMARK 465 ARG A 156 REMARK 465 ALA A 157 REMARK 465 TYR A 158 REMARK 465 GLY A 159 REMARK 465 ASN A 160 REMARK 465 VAL A 161 REMARK 465 VAL A 162 REMARK 465 LYS A 163 REMARK 465 VAL A 164 REMARK 465 GLU A 165 REMARK 465 GLY A 166 REMARK 465 GLU A 167 REMARK 465 SER A 168 REMARK 465 VAL A 169 REMARK 465 GLN A 170 REMARK 465 LYS A 171 REMARK 465 LEU A 172 REMARK 465 ALA A 173 REMARK 465 LYS A 174 REMARK 465 ALA A 175 REMARK 465 LEU A 176 REMARK 465 ARG A 177 REMARK 465 ALA A 178 REMARK 465 GLU A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 GLU A 182 REMARK 465 ARG A 183 REMARK 465 THR A 184 REMARK 465 ASP A 185 REMARK 465 GLU A 186 REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 ARG A 189 REMARK 465 MET A 190 REMARK 465 ILE A 191 REMARK 465 GLY A 192 REMARK 465 GLU A 193 REMARK 465 TYR A 194 REMARK 465 ARG A 195 REMARK 465 ASP A 196 REMARK 465 LYS A 197 REMARK 465 ILE A 198 REMARK 465 ASP A 199 REMARK 465 ALA A 200 REMARK 465 LEU A 201 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 ALA A 204 REMARK 465 ILE A 205 REMARK 465 GLU A 206 REMARK 465 ILE A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 465 GLU A 210 REMARK 465 GLY A 211 REMARK 465 LEU A 212 REMARK 465 GLN A 213 REMARK 465 ASP A 214 REMARK 465 GLU A 215 REMARK 465 ALA A 216 REMARK 465 ILE A 217 REMARK 465 GLN A 218 REMARK 465 GLU A 219 REMARK 465 ILE A 220 REMARK 465 ALA A 221 REMARK 465 GLY A 222 REMARK 465 MET A 223 REMARK 465 SER A 224 REMARK 465 ALA A 225 REMARK 465 GLU A 226 REMARK 465 VAL A 227 REMARK 465 LEU A 228 REMARK 465 GLU A 229 REMARK 465 ALA A 230 REMARK 465 ALA A 231 REMARK 465 ALA A 232 REMARK 465 GLU A 233 REMARK 465 GLU A 234 REMARK 465 VAL A 235 REMARK 465 PRO A 236 REMARK 465 ILE A 237 REMARK 465 PHE A 238 REMARK 465 GLY A 239 REMARK 465 ALA A 240 REMARK 465 GLY A 241 REMARK 465 VAL A 242 REMARK 465 ALA A 243 REMARK 465 THR A 244 REMARK 465 SER A 245 REMARK 465 ILE A 246 REMARK 465 ALA A 247 REMARK 465 THR A 248 REMARK 465 ALA A 249 REMARK 465 ARG A 250 REMARK 465 ALA A 251 REMARK 465 ILE A 252 REMARK 465 GLU A 253 REMARK 465 GLY A 254 REMARK 465 ALA A 255 REMARK 465 TYR A 256 REMARK 465 LYS A 257 REMARK 465 LEU A 258 REMARK 465 LYS A 259 REMARK 465 ALA A 260 REMARK 465 VAL A 261 REMARK 465 ILE A 262 REMARK 465 THR A 263 REMARK 465 ALA A 264 REMARK 465 LEU A 265 REMARK 465 THR A 266 REMARK 465 GLY A 267 REMARK 465 ILE A 268 REMARK 465 ASP A 269 REMARK 465 LEU A 270 REMARK 465 SER A 271 REMARK 465 HIS A 272 REMARK 465 MET A 273 REMARK 465 THR A 274 REMARK 465 THR A 275 REMARK 465 PRO A 276 REMARK 465 LYS A 277 REMARK 465 ILE A 278 REMARK 465 GLN A 279 REMARK 465 PRO A 280 REMARK 465 LYS A 281 REMARK 465 THR A 282 REMARK 465 LEU A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 ILE A 286 REMARK 465 LEU A 287 REMARK 465 ASP A 288 REMARK 465 ALA A 289 REMARK 465 PRO A 290 REMARK 465 GLY A 291 REMARK 465 GLY A 292 REMARK 465 ASN A 293 REMARK 465 VAL A 294 REMARK 465 THR A 295 REMARK 465 ASP A 296 REMARK 465 LEU A 297 REMARK 465 MET A 298 REMARK 465 LEU A 299 REMARK 465 THR A 300 REMARK 465 ARG A 301 REMARK 465 GLY A 302 REMARK 465 LEU A 303 REMARK 465 ASP A 304 REMARK 465 SER A 305 REMARK 465 LYS A 306 REMARK 465 ILE A 307 REMARK 465 ASP A 308 REMARK 465 LYS A 309 REMARK 465 ILE A 310 REMARK 465 ASN A 311 REMARK 465 GLU A 312 REMARK 465 ASN A 313 REMARK 465 LEU A 314 REMARK 465 ALA A 315 REMARK 465 GLU A 316 REMARK 465 VAL A 317 REMARK 465 GLU A 318 REMARK 465 HIS A 319 REMARK 465 MET A 320 REMARK 465 GLN A 321 REMARK 465 THR A 322 REMARK 465 SER A 323 REMARK 465 ILE A 324 REMARK 465 LEU A 325 REMARK 465 PRO A 326 REMARK 465 ARG A 327 REMARK 465 ILE A 328 REMARK 465 LYS A 329 REMARK 465 LYS A 330 REMARK 465 ALA A 331 REMARK 465 ILE A 332 REMARK 465 GLU A 333 REMARK 465 GLU A 334 REMARK 465 ASP A 335 REMARK 465 ARG A 336 REMARK 465 ASP A 337 REMARK 465 GLU A 338 REMARK 465 ILE A 339 REMARK 465 THR A 340 REMARK 465 ASN A 341 REMARK 465 TRP A 342 REMARK 465 SER A 343 REMARK 465 PRO A 344 REMARK 465 LYS A 345 REMARK 465 ARG A 346 REMARK 465 ILE A 347 REMARK 465 HIS A 348 REMARK 465 PRO A 349 REMARK 465 LYS A 350 REMARK 465 SER A 351 REMARK 465 VAL A 352 REMARK 465 GLN A 353 REMARK 465 ARG A 354 REMARK 465 PHE A 355 REMARK 465 ARG A 356 REMARK 465 VAL A 357 REMARK 465 PRO A 358 REMARK 465 ARG A 359 REMARK 465 MET A 360 REMARK 465 ALA A 417 REMARK 465 ALA A 418 REMARK 465 GLN A 419 REMARK 465 GLU A 420 REMARK 465 VAL A 421 REMARK 465 THR A 422 REMARK 465 ARG A 516 REMARK 465 ALA A 517 REMARK 465 ASP A 518 REMARK 465 ASP A 519 REMARK 465 ILE A 520 REMARK 465 ALA A 521 REMARK 465 MET A 522 REMARK 465 MET A 523 REMARK 465 LEU A 524 REMARK 465 ARG A 525 REMARK 465 ASP A 526 REMARK 465 ALA A 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 514 CG - SD - CE ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 414 108.38 -160.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 98 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8RT0 A 44 527 UNP R4J9Y2 R4J9Y2_9REOV 44 527 SEQADV 8RT0 HIS A 38 UNP R4J9Y2 EXPRESSION TAG SEQADV 8RT0 HIS A 39 UNP R4J9Y2 EXPRESSION TAG SEQADV 8RT0 HIS A 40 UNP R4J9Y2 EXPRESSION TAG SEQADV 8RT0 HIS A 41 UNP R4J9Y2 EXPRESSION TAG SEQADV 8RT0 HIS A 42 UNP R4J9Y2 EXPRESSION TAG SEQADV 8RT0 HIS A 43 UNP R4J9Y2 EXPRESSION TAG SEQADV 8RT0 ALA A 178 UNP R4J9Y2 VAL 178 CONFLICT SEQRES 1 A 490 HIS HIS HIS HIS HIS HIS GLY SER ALA THR ILE ASP GLY SEQRES 2 A 490 ILE ILE GLN GLY SER VAL HIS SER ALA LEU THR GLY GLU SEQRES 3 A 490 SER TYR GLY GLU SER VAL LYS GLN ALA VAL ILE LEU ASN SEQRES 4 A 490 VAL VAL GLY GLY GLY ASP SER ILE ALA ASP PRO LEU SER SEQRES 5 A 490 PRO GLY GLU ASN ASP MET VAL HIS ARG LEU LYS ARG LEU SEQRES 6 A 490 GLU ASP GLU GLN LYS GLY GLU ILE ILE ARG THR LYS HIS SEQRES 7 A 490 ASN ALA GLN VAL ILE ALA LYS PHE GLY ARG ASP LEU GLU SEQRES 8 A 490 ASP VAL TYR LYS PHE ALA SER ARG GLU HIS LYS VAL GLY SEQRES 9 A 490 GLU GLU GLU GLU ASP GLN ILE GLN MET LEU GLU LYS ALA SEQRES 10 A 490 LEU ARG ALA TYR GLY ASN VAL VAL LYS VAL GLU GLY GLU SEQRES 11 A 490 SER VAL GLN LYS LEU ALA LYS ALA LEU ARG ALA GLU GLU SEQRES 12 A 490 GLU GLU ARG THR ASP GLU GLU THR ARG MET ILE GLY GLU SEQRES 13 A 490 TYR ARG ASP LYS ILE ASP ALA LEU SER LYS ALA ILE GLU SEQRES 14 A 490 ILE GLU ARG GLU GLY LEU GLN ASP GLU ALA ILE GLN GLU SEQRES 15 A 490 ILE ALA GLY MET SER ALA GLU VAL LEU GLU ALA ALA ALA SEQRES 16 A 490 GLU GLU VAL PRO ILE PHE GLY ALA GLY VAL ALA THR SER SEQRES 17 A 490 ILE ALA THR ALA ARG ALA ILE GLU GLY ALA TYR LYS LEU SEQRES 18 A 490 LYS ALA VAL ILE THR ALA LEU THR GLY ILE ASP LEU SER SEQRES 19 A 490 HIS MET THR THR PRO LYS ILE GLN PRO LYS THR LEU GLU SEQRES 20 A 490 ALA ILE LEU ASP ALA PRO GLY GLY ASN VAL THR ASP LEU SEQRES 21 A 490 MET LEU THR ARG GLY LEU ASP SER LYS ILE ASP LYS ILE SEQRES 22 A 490 ASN GLU ASN LEU ALA GLU VAL GLU HIS MET GLN THR SER SEQRES 23 A 490 ILE LEU PRO ARG ILE LYS LYS ALA ILE GLU GLU ASP ARG SEQRES 24 A 490 ASP GLU ILE THR ASN TRP SER PRO LYS ARG ILE HIS PRO SEQRES 25 A 490 LYS SER VAL GLN ARG PHE ARG VAL PRO ARG MET GLN THR SEQRES 26 A 490 PRO SER ILE HIS ILE TYR ALA ALA PRO TRP ASP SER ASP SEQRES 27 A 490 SER VAL PHE ILE PHE HIS VAL ILE SER PRO HIS HIS LEU SEQRES 28 A 490 ASN GLU SER PHE PHE LEU GLY PHE ASP LEU GLU ILE GLU SEQRES 29 A 490 TYR VAL HIS TYR GLU ASP LEU ALA GLN HIS TRP HIS SER SEQRES 30 A 490 LEU GLY ALA ALA GLN GLU VAL THR GLY ARG THR PHE ARG SEQRES 31 A 490 GLU ALA TYR ARG GLU PHE PHE ASN LEU ALA SER ARG SER SEQRES 32 A 490 THR MET ALA SER ASP ILE HIS LYS LYS ARG LEU GLN ARG SEQRES 33 A 490 SER ARG MET SER HIS PRO ILE TYR LEU GLY VAL HIS ASN SEQRES 34 A 490 TYR GLU LEU SER TYR ILE ALA ILE LYS SER ASN ALA MET SEQRES 35 A 490 GLN LEU VAL THR ASP GLU ASP LEU GLN LYS HIS VAL LEU SEQRES 36 A 490 ARG GLY PRO LEU HIS PHE GLN ARG ARG VAL ILE MET ALA SEQRES 37 A 490 ALA LEU LYS TYR GLY VAL LYS VAL MET SER ARG ALA ASP SEQRES 38 A 490 ASP ILE ALA MET MET LEU ARG ASP ALA HET EDO A 601 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 HOH *8(H2 O) HELIX 1 AA1 TYR A 65 GLY A 79 1 15 HELIX 2 AA2 SER A 89 GLU A 137 1 49 HELIX 3 AA3 THR A 425 SER A 440 1 16 HELIX 4 AA4 SER A 444 MET A 456 1 13 HELIX 5 AA5 SER A 470 ASP A 484 1 15 HELIX 6 AA6 ASP A 484 LEU A 492 1 9 HELIX 7 AA7 PRO A 495 GLY A 510 1 16 HELIX 8 AA8 VAL A 511 SER A 515 5 5 SHEET 1 AA1 5 TYR A 402 ASP A 407 0 SHEET 2 AA1 5 SER A 391 ASP A 397 -1 N PHE A 393 O GLU A 406 SHEET 3 AA1 5 VAL A 377 ILE A 383 -1 N PHE A 380 O LEU A 394 SHEET 4 AA1 5 SER A 364 ALA A 369 -1 N TYR A 368 O ILE A 379 SHEET 5 AA1 5 ILE A 460 ASN A 466 -1 O LEU A 462 N ILE A 367 CRYST1 76.870 76.870 163.110 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013009 0.007511 0.000000 0.00000 SCALE2 0.000000 0.015021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006131 0.00000